Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006506

Physical Location & Seq

Genomic Coordinates Reverse (-)

542318 .. 544955

Gene Structure 2638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGTATGGAGATGGAGTTGTTTGTCACTCCAGAGAAGCAGAGGCAACATCCTTCAGTGAGCGTTGAGAAAACTCCAGTGAGAAGGAAATTGATTGTTGATGATGATTCTGAAATTGGATCAGAGAAGAAAGGGCAATCAAGAACTTCTGGAGGCGGGCTTCGTCAATTCAGTGTTATGGTTTGTCAGAAGTTGGAAGCCAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAAATTATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTACAATGAGAAGAACATAAGGCGGAGAGTCTACGATGCGCTCAATGTGTTCATGGCGTTGGATATTATTGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGACTTCCTATTACCTGCAAAAAGGATGTGGAAGAAGTCAAGATGGATCGTAATAAAGTTATGAGCAGTGTGCAAAAGAAGGCTGCTTTTCTTAAAGAGTTGAGAGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAATCAAGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCATTCATTCTACTTGAGACAAACCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGTACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGATGATGCTTACATTTTGAAACTGATGCAAGAACAGAAGCAAGAACAGAACAGAGTATCTTCTTCTTCATCTACACATCACCAATCTCAACATAGCTCCGCTCATTCTTCATCCAGTTCTTGCATTGCTTCTGGAACCTCAGGCCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

292

Amino Acids

33.04

Weight (kDa)

6.73

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	52 - 133	1.9e-15	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	140 - 264	1.1e-33	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02470 AT5G02470 AT5G02470
fragaria_vesca	FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010
malus_domestica	MD04G1126400.v1.1
prunus_persica	Prupe.6G253200_v2.0.a1 Prupe.6G253200_v2.0.a1
pyrus_communis	pycom04g11340
rosa_chinensis	RchiOBHm_Chr3g0466841
rosa_laevigata	RLG00000024547
rosa_multiflora	Rmu_sc0026100.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414090
rosa_rugosa	Rorug03G0083900 Rorug03G0084000 Rorug03G0084100
rosa_samantha	Rh3AG131700 Rh3BG152800 Rh3CG153000 Rh3DG153900
rosa_wichuraiana	Rw3G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	3 cut(s)	156, 319, 795
AclWI	GGATC	4 cut(s)	127, 450, 855, 868
AcuI	CTGAAG	2 cut(s)	39, 663
AfaI	GTAC	2 cut(s)	299, 660
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgsI	TTSAA	3 cut(s)	286, 673, 715
AloI	GAACNNNNNNTCC	2 cut(s)	845, 877
AluBI	AGCT	1 cut(s)	792
AluI	AGCT	1 cut(s)	792
Alw26I	GTCTC	2 cut(s)	514, 599
AlwI	GGATC	4 cut(s)	127, 450, 855, 868
Ama87I	CYCGRG	1 cut(s)	856
AoxI	GGCC	2 cut(s)	565, 838
ApeKI	GCWGC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	337
AspS9I	GGNCC	3 cut(s)	566, 691, 839
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	856
AvaII	GGWCC	1 cut(s)	691
AxyI	CCTNAGG	1 cut(s)	835
BamHI	GGATCC	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	3 cut(s)	7, 433, 541
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	2 cut(s)	514, 599
BfuAI	ACCTGC	1 cut(s)	419
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	842
Bme18I	GGWCC	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	856
BmgT120I	GGNCC	3 cut(s)	566, 691, 839
BmiI	GGNNCC	2 cut(s)	832, 862
BmrFI	CCNGG	1 cut(s)	842
BmsI	GCATC	3 cut(s)	322, 691, 711
BpiI	GAAGAC	1 cut(s)	563
BpmI	CTGGAG	3 cut(s)	15, 60, 171
BpuEI	CTTGAG	4 cut(s)	496, 539, 546, 623
BpuMI	CCSGG	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	514
BsaWI	WCCGGW	1 cut(s)	387
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	77, 810
Bse21I	CCTNAGG	1 cut(s)	835
Bse3DI	GCAATG	1 cut(s)	819
BseGI	GGATG	3 cut(s)	49, 427, 806
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	2 cut(s)	77, 810
BseXI	GCAGC	1 cut(s)	466
BseYI	CCCAGC	1 cut(s)	568
BshFI	GGCC	2 cut(s)	567, 840
BsiHKCI	CYCGRG	1 cut(s)	856
BsiSI	CCGG	2 cut(s)	388, 842
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	2 cut(s)	514, 599
BsnI	GGCC	2 cut(s)	567, 840
Bso31I	GGTCTC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	856
Bsp1407I	TGTACA	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	119, 442, 860
BspACI	CCGC	3 cut(s)	156, 319, 795
BspANI	GGCC	2 cut(s)	567, 840
BspCNI	CTCAG	1 cut(s)	848
BspLI	GGNNCC	2 cut(s)	832, 862
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	4 cut(s)	127, 450, 855, 868
BspTNI	GGTCTC	1 cut(s)	514
BsrBI	CCGCTC	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	658
BsrI	ACTGG	2 cut(s)	77, 810
BssMI	GATC	3 cut(s)	119, 442, 860
BstAUI	TGTACA	1 cut(s)	658
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	835
BstF5I	GGATG	3 cut(s)	49, 427, 806
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	3 cut(s)	122, 445, 863
BstMAI	GTCTC	2 cut(s)	514, 599
BstMBI	GATC	3 cut(s)	119, 442, 860
BstMWI	GCNNNNNNNGC	1 cut(s)	846
BstSCI	CCNGG	1 cut(s)	840
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	860
Bsu36I	CCTNAGG	1 cut(s)	835
BsuRI	GGCC	2 cut(s)	567, 840
BtsCI	GGATG	3 cut(s)	49, 427, 806
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	4 cut(s)	63, 84, 178, 469
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	1 cut(s)	158
CfoI	GCGC	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	566, 691, 839
Csp6I	GTAC	2 cut(s)	298, 659
CviAII	CATG	2 cut(s)	349, 695
CviJI	RGCY	7 cut(s)	160, 200, 280, 479, 567, 792, 840
CviKI_1	RGCY	7 cut(s)	160, 200, 280, 479, 567, 792, 840
CviQI	GTAC	2 cut(s)	298, 659
DdeI	CTNAG	1 cut(s)	835
DpnI	GATC	3 cut(s)	121, 444, 862
DpnII	GATC	3 cut(s)	119, 442, 860
EciI	GGCGGA	1 cut(s)	334
Eco31I	GGTCTC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	691
Eco57I	CTGAAG	2 cut(s)	39, 663
Eco81I	CCTNAGG	1 cut(s)	835
Eco88I	CYCGRG	1 cut(s)	856
FaeI	CATG	2 cut(s)	352, 698
FaiI	YATR	9 cut(s)	8, 179, 314, 350, 458, 530, 650, 696, 789
FatI	CATG	2 cut(s)	348, 694
FauI	CCCGC	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	3 cut(s)	36, 434, 793
Fsp4HI	GCNGC	1 cut(s)	480
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	480
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	3 cut(s)	15, 60, 171
HaeIII	GGCC	2 cut(s)	567, 840
HapII	CCGG	2 cut(s)	388, 842
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	2 cut(s)	352, 698
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HinfI	GANTC	4 cut(s)	107, 324, 523, 559
HpaII	CCGG	2 cut(s)	388, 842
HphI	GGTGA	1 cut(s)	767
Hpy166II	GTNNAC	2 cut(s)	328, 661
Hpy188I	TCNGA	5 cut(s)	112, 124, 189, 247, 643
Hpy8I	GTNNAC	2 cut(s)	328, 661
HpyAV	CCTTC	4 cut(s)	63, 78, 469, 569
HpyCH4V	TGCA	7 cut(s)	230, 368, 414, 469, 652, 724, 819
HpyF10VI	GCNNNNNNNGC	1 cut(s)	846
HpyF3I	CTNAG	1 cut(s)	835
Hsp92II	CATG	2 cut(s)	352, 698
HspAI	GCGC	1 cut(s)	335
Kzo9I	GATC	3 cut(s)	119, 442, 860
LmnI	GCTCC	1 cut(s)	797
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	3 cut(s)	322, 691, 711
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	121, 444, 862
MbiI	CCGCTC	1 cut(s)	797
MboI	GATC	3 cut(s)	119, 442, 860
MflI	RGATCY	1 cut(s)	860
MluCI	AATT	5 cut(s)	89, 114, 167, 237, 258
MlyI	GAGTC	3 cut(s)	333, 532, 553
MmeI	TCCRAC	2 cut(s)	174, 336
MnlI	CCTC	6 cut(s)	36, 146, 217, 624, 674, 844
MseI	TTAA	2 cut(s)	261, 489
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	2 cut(s)	388, 842
MspR9I	CCNGG	1 cut(s)	842
MwoI	GCNNNNNNNGC	1 cut(s)	846
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	3 cut(s)	119, 442, 860
NlaIII	CATG	2 cut(s)	352, 698
NlaIV	GGNNCC	2 cut(s)	832, 862
NmuCI	GTSAC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	3 cut(s)	332, 531, 553
PpsI	GAGTC	3 cut(s)	332, 531, 553
PspFI	CCCAGC	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	832, 862
PspPI	GGNCC	3 cut(s)	566, 691, 839
PsuI	RGATCY	1 cut(s)	860
RsaI	GTAC	2 cut(s)	299, 660
RsaNI	GTAC	2 cut(s)	298, 659
RseI	CAYNNNNRTG	1 cut(s)	699
SaqAI	TTAA	2 cut(s)	261, 489
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	3 cut(s)	119, 442, 860
Sau96I	GGNCC	3 cut(s)	566, 691, 839
SchI	GAGTC	3 cut(s)	333, 532, 553
ScrFI	CCNGG	1 cut(s)	842
SetI	ASST	8 cut(s)	228, 413, 510, 587, 666, 685, 794, 836
SfaNI	GCATC	3 cut(s)	322, 691, 711
SinI	GGWCC	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	4 cut(s)	511, 518, 561, 602
SmoI	CTYRAG	4 cut(s)	511, 518, 561, 602
Sse9I	AATT	5 cut(s)	89, 114, 167, 237, 258
SsiI	CCGC	3 cut(s)	156, 319, 795
StyD4I	CCNGG	1 cut(s)	840
TaqI	TCGA	4 cut(s)	533, 627, 633, 666
TaqII	GACCGA	1 cut(s)	679
TasI	AATT	5 cut(s)	89, 114, 167, 237, 258
TatI	WGTACW	2 cut(s)	297, 658
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	261, 489
Tru9I	TTAA	2 cut(s)	261, 489
TscAI	CASTG	4 cut(s)	63, 84, 178, 469
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	5 cut(s)	303, 337, 583, 753, 795
TspRI	CASTG	4 cut(s)	63, 84, 178, 469
VpaK11BI	GGWCC	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.