Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006506

Physical Location & Seq

Genomic Coordinates Forward (+)

24695916 .. 24699483

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G253200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATGATAACTACTCGGGGGATTCACTTGGTGGATTCTTTCAGAAGCATTCTAGTGCAGAAAGTTCTGTTTCAGCTTCACTGAACAATGCAGCTGCTTTTGGGAGTGCACGGAGATCTATCACTTTCGATCATGACGATACTGGTACTGCCAGTGTTGAGACAAATGCACCAAAGAAGAAAAGGGTTTCAAGAATGACGGGTGGAGGTCTGCGCCAGTTCAGTGCCAAAGTTTGTGACTTGTTGGAGAGCAAGGGAAGAACAACCTATGCTGAGCTTGCAGATTACATAATGTCAGAGTTAGCTGGAAATGACAGTGAAACAGCAACATCTTTGAGCGAGTTTAATGACAAAAATATTCCACGGCGGGTATATGATGCATTAAATGTTCTTGAGGCATTGGATATCATCACAAGAGTTAAAAAAGAAATCAAGTGGAATGGGATTCCAGACAGAAAGATGGATTTGGAGGGAATGAAGGCAGAGTGTGTCAGAATGATGAATAGGATTGGAAGGAAAACGGCTTACTTGAAAGACTTAGAAGAGCAATTTGCAGATCTCCAAAATTTGATGTTTTGCAATAAAGAGTTGCTTAAGAGTGGAAACACTCATCCGGGGGGATTTTCTTTGCCATTTATACTGGTCCAGACAAGCCGTGATGCTGCCGTCGAGATTGAGATTTCTGAAGACAAGCACATGGTGCATTTCGATTTCAATAGTGCGCCCTTCTTCTTGCACGATGATACTTACATTCTGAAGCTATTGCGGCGTCACCAACGGCCGGAAAGAACAAATGTATCTCAAAATTCTTCAGTTCACCCGCCTTCTCCATGTCCCAGCATTGTATCTGGAGGCGCCGGACCCTTTTATTGGAACTCTGGAACAGAAACTCCGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

300

Amino Acids

33.24

Weight (kDa)

6.09

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02470 AT5G02470 AT5G02470
fragaria_vesca	FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010
malus_domestica	MD04G1126400.v1.1
prunus_persica	Prupe.6G253200_v2.0.a1 Prupe.6G253200_v2.0.a1
pyrus_communis	pycom04g11340
rosa_chinensis	RchiOBHm_Chr3g0466841
rosa_laevigata	RLG00000024547
rosa_multiflora	Rmu_sc0026100.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414090
rosa_rugosa	Rorug03G0083900 Rorug03G0084000 Rorug03G0084100
rosa_samantha	Rh3AG131700 Rh3BG152800 Rh3CG153000 Rh3DG153900
rosa_wichuraiana	Rw3G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	854
AciI	CCGC	3 cut(s)	367, 766, 821
AcoI	YGGCCR	1 cut(s)	779
AcsI	RAATTY	2 cut(s)	565, 805
AcuI	CTGAAG	3 cut(s)	705, 776, 795
AcyI	GRCGYC	2 cut(s)	769, 855
AdeI	CACNNNGTG	2 cut(s)	32, 700
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	781, 870
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	3 cut(s)	192, 532, 715
AloI	GAACNNNNNNTCC	1 cut(s)	874
AluBI	AGCT	5 cut(s)	77, 95, 277, 305, 760
AluI	AGCT	5 cut(s)	77, 95, 277, 305, 760
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	155
Alw44I	GTGCAC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	16
AoxI	GGCC	1 cut(s)	779
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	3 cut(s)	92, 95, 662
ApoI	RAATTY	2 cut(s)	565, 805
AspLEI	GCGC	3 cut(s)	216, 724, 857
AspS9I	GGNCC	2 cut(s)	643, 860
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	2 cut(s)	764, 809
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	643, 860
BaeGI	GKGCMC	1 cut(s)	112
BaeI	ACNNNNGTAYC	2 cut(s)	780, 813
BanI	GGYRCC	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	82, 104, 649
BccI	CCATC	1 cut(s)	454
BceAI	ACGGC	5 cut(s)	380, 537, 639, 650, 794
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	54
BfoI	RGCGCY	1 cut(s)	858
BfrI	CTTAAG	1 cut(s)	593
BglII	AGATCT	2 cut(s)	116, 556
BisI	GCNGC	4 cut(s)	93, 96, 663, 767
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	4 cut(s)	94, 97, 664, 768
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	2 cut(s)	643, 860
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	643, 860
BmiI	GGNNCC	2 cut(s)	856, 862
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	2 cut(s)	367, 649
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	870
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	615
BsaHI	GRCGYC	2 cut(s)	769, 855
BsaJI	CCNNGG	2 cut(s)	362, 614
BsaXI	ACNNNNNCTCC	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	2 cut(s)	781, 870
Bse1I	ACTGG	4 cut(s)	148, 153, 217, 645
BseDI	CCNNGG	2 cut(s)	362, 614
BseGI	GGATG	2 cut(s)	10, 610
BseLI	CCNNNNNNNGG	2 cut(s)	781, 870
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	4 cut(s)	148, 153, 217, 645
BseSI	GKGCMC	1 cut(s)	112
BseX3I	CGGCCG	1 cut(s)	779
BseXI	GCAGC	3 cut(s)	82, 104, 649
BseYI	CCCAGC	1 cut(s)	836
BsgI	GTGCAG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	782
BshFI	GGCC	1 cut(s)	781
BshNI	GGYRCC	1 cut(s)	854
BsiEI	CGRYCG	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	3 cut(s)	614, 782, 858
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	2 cut(s)	781, 870
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	781
BsoBI	CYCGRG	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	116, 130, 556
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	367, 766, 821
BspANI	GGCC	1 cut(s)	781
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	856, 862
BspQI	GCTCTTC	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	854
BspTI	CTTAAG	1 cut(s)	593
BsrI	ACTGG	4 cut(s)	148, 153, 217, 645
BssECI	CCNNGG	2 cut(s)	362, 614
BssMI	GATC	3 cut(s)	116, 130, 556
BssNI	GRCGYC	2 cut(s)	769, 855
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	2 cut(s)	769, 855
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	273, 538
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	10, 610
BstH2I	RGCGCY	1 cut(s)	858
BstHHI	GCGC	3 cut(s)	216, 724, 857
BstKTI	GATC	3 cut(s)	119, 133, 559
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	3 cut(s)	116, 130, 556
BstMCI	CGRYCG	1 cut(s)	782
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 700, 766
BstSCI	CCNGG	1 cut(s)	613
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	3 cut(s)	82, 104, 649
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	2 cut(s)	116, 556
BstYI	RGATCY	2 cut(s)	116, 556
BstZI	CGGCCG	1 cut(s)	779
BsuRI	GGCC	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	10, 610
BtsIMutI	CAGTG	4 cut(s)	80, 160, 229, 322
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	3 cut(s)	216, 724, 857
Cfr13I	GGNCC	2 cut(s)	643, 860
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	134, 697, 831
CviJI	RGCY	8 cut(s)	77, 95, 277, 305, 524, 654, 760, 781
CviKI_1	RGCY	8 cut(s)	77, 95, 277, 305, 524, 654, 760, 781
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	2 cut(s)	273, 538
DinI	GGCGCC	1 cut(s)	856
DpnI	GATC	3 cut(s)	118, 132, 558
DpnII	GATC	3 cut(s)	116, 130, 556
DraIII	CACNNNGTG	2 cut(s)	32, 700
EaeI	YGGCCR	1 cut(s)	779
EagI	CGGCCG	1 cut(s)	779
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
EclXI	CGGCCG	1 cut(s)	779
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	643, 860
Eco52I	CGGCCG	1 cut(s)	779
Eco57I	CTGAAG	3 cut(s)	705, 776, 795
Eco88I	CYCGRG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	382
EgeI	GGCGCC	1 cut(s)	856
EheI	GGCGCC	1 cut(s)	856
FaeI	CATG	3 cut(s)	137, 700, 834
FaiI	YATR	8 cut(s)	135, 270, 290, 373, 375, 638, 698, 832
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	3 cut(s)	133, 696, 830
FauI	CCCGC	2 cut(s)	360, 828
Fnu4HI	GCNGC	4 cut(s)	93, 96, 663, 767
FokI	GGATG	2 cut(s)	17, 597
Fsp4HI	GCNGC	4 cut(s)	93, 96, 663, 767
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	3 cut(s)	215, 723, 856
GluI	GCNGC	4 cut(s)	93, 96, 663, 767
GsaI	CCCAGC	1 cut(s)	840
GsuI	CTGGAG	1 cut(s)	870
HaeII	RGCGCY	1 cut(s)	858
HaeIII	GGCC	1 cut(s)	781
HapII	CCGG	3 cut(s)	614, 782, 858
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	3 cut(s)	216, 724, 857
Hin1I	GRCGYC	2 cut(s)	769, 855
Hin1II	CATG	3 cut(s)	137, 700, 834
Hin6I	GCGC	3 cut(s)	214, 722, 855
HinP1I	GCGC	3 cut(s)	214, 722, 855
HinfI	GANTC	3 cut(s)	23, 36, 445
HpaII	CCGG	3 cut(s)	614, 782, 858
HphI	GGTGA	2 cut(s)	764, 809
Hpy166II	GTNNAC	2 cut(s)	110, 817
Hpy188I	TCNGA	6 cut(s)	45, 298, 494, 685, 756, 894
Hpy188III	TCNNGA	8 cut(s)	134, 192, 392, 449, 646, 670, 849, 879
Hpy8I	GTNNAC	2 cut(s)	110, 817
Hpy99I	CGWCG	1 cut(s)	671
HpyAV	CCTTC	4 cut(s)	472, 507, 736, 834
HpyCH4III	ACNGT	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 700, 766
HpyF3I	CTNAG	2 cut(s)	273, 538
Hsp92I	GRCGYC	2 cut(s)	769, 855
Hsp92II	CATG	3 cut(s)	137, 700, 834
HspAI	GCGC	3 cut(s)	214, 722, 855
KasI	GGCGCC	1 cut(s)	854
Kzo9I	GATC	3 cut(s)	116, 130, 556
LguI	GCTCTTC	1 cut(s)	537
Lsp1109I	GCAGC	3 cut(s)	82, 104, 649
LweI	GCATC	2 cut(s)	367, 649
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	236, 770
MalI	GATC	3 cut(s)	118, 132, 558
MboI	GATC	3 cut(s)	116, 130, 556
MboII	GAAGA	6 cut(s)	190, 270, 554, 698, 721, 801
MflI	RGATCY	2 cut(s)	116, 556
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	3 cut(s)	548, 565, 805
Mly113I	GGCGCC	1 cut(s)	855
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	200, 388, 463, 845
Mph1103I	ATGCAT	1 cut(s)	382
MseI	TTAA	4 cut(s)	345, 383, 420, 594
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	95
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	3 cut(s)	614, 782, 858
MspR9I	CCNGG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	278, 700, 766
NarI	GGCGCC	1 cut(s)	855
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	3 cut(s)	116, 130, 556
NlaIII	CATG	3 cut(s)	137, 700, 834
NlaIV	GGNNCC	2 cut(s)	856, 862
NmuCI	GTSAC	2 cut(s)	236, 770
NsiI	ATGCAT	1 cut(s)	382
PagI	TCATGA	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	23, 36, 445
PkrI	GCNGC	4 cut(s)	94, 97, 664, 768
PluTI	GGCGCC	1 cut(s)	858
PspFI	CCCAGC	1 cut(s)	836
PspN4I	GGNNCC	2 cut(s)	856, 862
PspPI	GGNCC	2 cut(s)	643, 860
PsuI	RGATCY	2 cut(s)	116, 556
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	54
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	4 cut(s)	345, 383, 420, 594
SatI	GCNGC	4 cut(s)	93, 96, 663, 767
Sau3AI	GATC	3 cut(s)	116, 130, 556
Sau96I	GGNCC	2 cut(s)	643, 860
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	7 cut(s)	79, 97, 211, 269, 279, 307, 762
SfaNI	GCATC	2 cut(s)	367, 649
SfoI	GGCGCC	1 cut(s)	856
SinI	GGWCC	2 cut(s)	643, 860
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	392, 593
SmoI	CTYRAG	2 cut(s)	392, 593
Sse9I	AATT	3 cut(s)	548, 565, 805
SsiI	CCGC	3 cut(s)	367, 766, 821
SspDI	GGCGCC	1 cut(s)	854
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	129, 669, 708
TasI	AATT	3 cut(s)	548, 565, 805
TauI	GCSGC	1 cut(s)	769
TfiI	GAWTC	3 cut(s)	23, 36, 445
Tru1I	TTAA	4 cut(s)	345, 383, 420, 594
Tru9I	TTAA	4 cut(s)	345, 383, 420, 594
TscAI	CASTG	4 cut(s)	87, 160, 229, 322
TseFI	GTSAC	2 cut(s)	236, 770
TseI	GCWGC	3 cut(s)	92, 95, 662
Tsp45I	GTSAC	2 cut(s)	236, 770
TspDTI	ATGAA	2 cut(s)	491, 515
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	4 cut(s)	87, 160, 229, 322
Vha464I	CTTAAG	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	643, 860
XapI	RAATTY	2 cut(s)	565, 805
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.