Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006506

Physical Location & Seq

Genomic Coordinates Forward (+)

21246850 .. 21250170

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1126400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGATGATAATTACTCTGGGGATTCTTCTAGTGGATTCTCTCAGAAAAATTCTAGTGCAGCAAGTTCTGTTTCAGCTTCAGTGATGAACAATGCAGCTGCTTCCGAGAGCGCCCGAAGTTCTGTTGAGATAAATGCACCAAAGAAGAAAAGGGCATCGGCAATAATGGCGGGAGGTCTGCGAGAGTTCAGTTCAAGAGTTTGCAACATATTGGAGAGCAAGGGAACAACCACCTTATCTAAGGTTGCAGATGAGATAATTTCTGAGTTTTCTGGAAATGACTCTGAAACAGCAAAGTGTTCGAAAGAGTTTGAAAACGTACGACGTCGAGTATATACTGTGTTCCATGTTCTTGAGGCACTGGATATCGTCACAACAGCTAAAAAGGAAATCAAGTGGAAGGGGCGTCCTTCAGACAGAAGTATAATGAATCTGGAAGGGATGAATGAAGAGTGTGTCAAATTGGTGAATACGATTGGAAGGAAGACGGCATACTTGAAAGAATTAGAAGAGCAAATTGCAGATCTCGAAGATTTAATGTTGCACAATAAGCAGTTGCTCAAGAATGGGAACACTCTTCCTGAAGGATTTTCGTTGCCATTTATACTGGTTCAGACAAGCTCTCATGCTAGTGTTGAGGTTGAGATTTCCGAAGACATGCGCGTGGTGTTCTTCGACTTCAATAGTACACCCTTCTCCTTGCACGATGATGCAACCATTGTGAAGTTATTGCAGCGTCACCAGCGGCCAGAAAGAACAAATGCTTCTCAAAGTGCTTCAGTTCACTCGTCTCCACGCTCTGGCGCTCTGACCAGACCTTTCCGTTGGAACTCCGAAACAGATATTCCTAAATCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

287

Amino Acids

31.62

Weight (kDa)

6.62

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	59 - 135	1.2e-11	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	146 - 256	2.4e-26	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02470 AT5G02470 AT5G02470
fragaria_vesca	FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010
malus_domestica	MD04G1126400.v1.1
prunus_persica	Prupe.6G253200_v2.0.a1 Prupe.6G253200_v2.0.a1
pyrus_communis	pycom04g11340
rosa_chinensis	RchiOBHm_Chr3g0466841
rosa_laevigata	RLG00000024547
rosa_multiflora	Rmu_sc0026100.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414090
rosa_rugosa	Rorug03G0083900 Rorug03G0084000 Rorug03G0084100
rosa_samantha	Rh3AG131700 Rh3BG152800 Rh3CG153000 Rh3DG153900
rosa_wichuraiana	Rw3G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	800
AccII	CGCG	1 cut(s)	663
AciI	CCGC	2 cut(s)	170, 745
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	4 cut(s)	63, 396, 603, 762
AcyI	GRCGYC	2 cut(s)	325, 406
AfaI	GTAC	2 cut(s)	321, 688
AfiI	CCNNNNNNNGG	1 cut(s)	800
AgsI	TTSAA	4 cut(s)	195, 314, 499, 682
AluBI	AGCT	4 cut(s)	77, 98, 380, 621
AluI	AGCT	4 cut(s)	77, 98, 380, 621
Alw26I	GTCTC	1 cut(s)	795
AoxI	GGCC	1 cut(s)	746
ApeKI	GCWGC	4 cut(s)	59, 95, 98, 733
ApoI	RAATTY	1 cut(s)	49
AspLEI	GCGC	3 cut(s)	113, 663, 806
AsuHPI	GGTGA	2 cut(s)	478, 731
AsuII	TTCGAA	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbsI	GAAGAC	2 cut(s)	491, 660
BbvI	GCAGC	4 cut(s)	71, 85, 107, 745
BceAI	ACGGC	1 cut(s)	504
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	3 cut(s)	30, 54, 630
BfoI	RGCGCY	2 cut(s)	114, 807
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	5 cut(s)	60, 96, 99, 734, 746
BlsI	GCNGC	5 cut(s)	61, 97, 100, 735, 747
BmsI	GCATC	2 cut(s)	164, 700
BpiI	GAAGAC	2 cut(s)	491, 660
Bpu14I	TTCGAA	1 cut(s)	302
BpuEI	CTTGAG	2 cut(s)	374, 545
BsaHI	GRCGYC	2 cut(s)	325, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	800
Bse1I	ACTGG	2 cut(s)	366, 612
BseGI	GGATG	2 cut(s)	10, 447
BseLI	CCNNNNNNNGG	1 cut(s)	800
BseMII	CTCAG	2 cut(s)	56, 255
BseNI	ACTGG	2 cut(s)	366, 612
BseXI	GCAGC	4 cut(s)	71, 85, 107, 745
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	748
BsiWI	CGTACG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	800
BsmAI	GTCTC	1 cut(s)	795
BsmBI	CGTCTC	1 cut(s)	795
BsnI	GGCC	1 cut(s)	748
Bsp119I	TTCGAA	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	2 cut(s)	170, 745
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	2 cut(s)	55, 256
BspFNI	CGCG	1 cut(s)	663
BspQI	GCTCTTC	1 cut(s)	504
BspT104I	TTCGAA	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	366, 612
BssMI	GATC	1 cut(s)	523
BssNI	GRCGYC	2 cut(s)	325, 406
Bst4CI	ACNGT	1 cut(s)	340
Bst6I	CTCTTC	3 cut(s)	444, 504, 582
BstACI	GRCGYC	2 cut(s)	325, 406
BstBI	TTCGAA	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	42, 240, 264
BstF5I	GGATG	2 cut(s)	10, 447
BstFNI	CGCG	1 cut(s)	663
BstH2I	RGCGCY	2 cut(s)	114, 807
BstHHI	GCGC	3 cut(s)	113, 663, 806
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 550, 742
BstNSI	RCATGY	1 cut(s)	661
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	4 cut(s)	71, 85, 107, 745
BstV2I	GAAGAC	2 cut(s)	491, 660
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	10, 447
BtsIMutI	CAGTG	2 cut(s)	87, 359
CfoI	GCGC	3 cut(s)	113, 663, 806
CseI	GACGC	2 cut(s)	395, 725
Csp6I	GTAC	2 cut(s)	320, 687
CviAII	CATG	3 cut(s)	347, 626, 658
CviJI	RGCY	5 cut(s)	77, 98, 380, 621, 748
CviKI_1	RGCY	5 cut(s)	77, 98, 380, 621, 748
CviQI	GTAC	2 cut(s)	320, 687
DdeI	CTNAG	3 cut(s)	42, 240, 264
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	3 cut(s)	444, 504, 582
EarI	CTCTTC	3 cut(s)	444, 504, 582
Eco32I	GATATC	1 cut(s)	367
Eco57I	CTGAAG	4 cut(s)	63, 396, 603, 762
EcoRV	GATATC	1 cut(s)	367
Esp3I	CGTCTC	1 cut(s)	795
FaeI	CATG	3 cut(s)	350, 629, 661
FaiI	YATR	9 cut(s)	209, 334, 336, 348, 425, 493, 605, 627, 659
FatI	CATG	3 cut(s)	346, 625, 657
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	60, 96, 99, 734, 746
FokI	GGATG	2 cut(s)	17, 454
Fsp4HI	GCNGC	5 cut(s)	60, 96, 99, 734, 746
FspBI	CTAG	3 cut(s)	30, 54, 630
GlaI	GCGC	3 cut(s)	112, 662, 805
GluI	GCNGC	5 cut(s)	60, 96, 99, 734, 746
HaeII	RGCGCY	2 cut(s)	114, 807
HaeIII	GGCC	1 cut(s)	748
HgaI	GACGC	2 cut(s)	395, 725
HhaI	GCGC	3 cut(s)	113, 663, 806
Hin1I	GRCGYC	2 cut(s)	325, 406
Hin1II	CATG	3 cut(s)	350, 629, 661
Hin6I	GCGC	3 cut(s)	111, 661, 804
HinP1I	GCGC	3 cut(s)	111, 661, 804
HinfI	GANTC	4 cut(s)	23, 36, 281, 430
HphI	GGTGA	2 cut(s)	478, 731
Hpy166II	GTNNAC	2 cut(s)	689, 784
Hpy188I	TCNGA	9 cut(s)	45, 106, 265, 286, 415, 615, 652, 810, 835
Hpy188III	TCNNGA	7 cut(s)	195, 273, 353, 434, 527, 562, 581
Hpy8I	GTNNAC	2 cut(s)	689, 784
Hpy99I	CGWCG	2 cut(s)	327, 330
HpyAV	CCTTC	6 cut(s)	394, 420, 431, 474, 578, 703
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	2 cut(s)	318, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 550, 742
HpyF3I	CTNAG	3 cut(s)	42, 240, 264
HpySE526I	ACGT	2 cut(s)	318, 325
Hsp92I	GRCGYC	2 cut(s)	325, 406
Hsp92II	CATG	3 cut(s)	350, 629, 661
HspAI	GCGC	3 cut(s)	111, 661, 804
Kzo9I	GATC	1 cut(s)	523
LguI	GCTCTTC	1 cut(s)	504
Lsp1109I	GCAGC	4 cut(s)	71, 85, 107, 745
LweI	GCATC	2 cut(s)	164, 700
MaeI	CTAG	3 cut(s)	30, 54, 630
MaeII	ACGT	2 cut(s)	318, 325
MaeIII	GTNAC	2 cut(s)	370, 737
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	9 cut(s)	18, 157, 461, 496, 521, 542, 569, 664, 665
MflI	RGATCY	1 cut(s)	523
MluCI	AATT	6 cut(s)	10, 49, 258, 461, 503, 516
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	806
MnlI	CCTC	3 cut(s)	167, 349, 631
MseI	TTAA	1 cut(s)	536
MslI	CAYNNNNRTG	3 cut(s)	630, 662, 708
MspA1I	CMGCKG	2 cut(s)	98, 745
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	167, 550, 742
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	3 cut(s)	350, 629, 661
NmuCI	GTSAC	2 cut(s)	370, 737
NspI	RCATGY	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	504
PfeI	GAWTC	3 cut(s)	23, 36, 430
Pfl23II	CGTACG	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	800
PkrI	GCNGC	5 cut(s)	61, 97, 100, 735, 747
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PspLI	CGTACG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	523
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	321, 688
RsaNI	GTAC	2 cut(s)	320, 687
RseI	CAYNNNNRTG	3 cut(s)	630, 662, 708
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	536
SatI	GCNGC	5 cut(s)	60, 96, 99, 734, 746
Sau3AI	GATC	1 cut(s)	523
SchI	GAGTC	1 cut(s)	275
SfaNI	GCATC	2 cut(s)	164, 700
SfuI	TTCGAA	1 cut(s)	302
SmiMI	CAYNNNNRTG	3 cut(s)	630, 662, 708
SmlI	CTYRAG	2 cut(s)	353, 560
SmoI	CTYRAG	2 cut(s)	353, 560
Sse9I	AATT	6 cut(s)	10, 49, 258, 461, 503, 516
SsiI	CCGC	2 cut(s)	170, 745
SspMI	CTAG	3 cut(s)	30, 54, 630
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	2 cut(s)	321, 328
TaqI	TCGA	4 cut(s)	302, 328, 528, 675
TasI	AATT	6 cut(s)	10, 49, 258, 461, 503, 516
TatI	WGTACW	1 cut(s)	686
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	3 cut(s)	23, 36, 430
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TscAI	CASTG	2 cut(s)	87, 366
TseFI	GTSAC	2 cut(s)	370, 737
TseI	GCWGC	4 cut(s)	59, 95, 98, 733
Tsp45I	GTSAC	2 cut(s)	370, 737
TspDTI	ATGAA	4 cut(s)	101, 443, 458, 462
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	2 cut(s)	87, 366
Van91I	CCANNNNNTGG	1 cut(s)	800
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	661
XspI	CTAG	3 cut(s)	30, 54, 630
ZraI	GACGTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.