Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006506

Physical Location & Seq

Genomic Coordinates Reverse (-)

6518679 .. 6519500

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0084100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAGAACCCTAATTCCGACGACACGGCTCCCAATCCAAACCCCAACAACCACCACAACGCTGCCAATGGGCGGCTGAGCAAGGTAGTAGTGGCACCGGGATCAGCCTCGGCCGGAGGAGGAGGAGCAGCCGGCGGCGGAGTAGTAGTAGTAGAGGAGTGCAGCAACTGCGGGACCAAGAAGGGGTGGGTCCTACACAATGTCCGTTACCGAGCCACCCTCCGCCGCCTCTGCACCTCCTGCGTCCTCCGCCTCCACCCGGCCAGCTTCTGCCCCATCTGCTTCCTCTTCCAGGACCACAACCACAACAATTCCCAAAATGCCCCTCCTCCCAACCTCGTCTCCTGCTCCAAGTGCCCCTCCCTCTCCCACTCCGACTGCCTCCCTCCCTACGCCGCCTTCTCCCCCTCCCCATTCCTCTGCCCGCCCTGCGCCTCCGCCAACCCCAAATTCTCCTTCTTCGAGCTCGACGACCGCAACAGGGTCCTCGACAAGCGCCTCGCCGCCGTGCTGCTCTGCGCCGCCAGCATCGCCGCCTCGTCCATGTCCAAAGCCGTTGCCAACTCACGCGCCGAGGCCGAGCGGCGCGTGAGGGAGGCCGCCTTGGCTCGGAAGCGCGCTCGCGAGGCCTTGGACCGCTTCGTGCTGATCTCCTCCGTCCAACCCAGACCCGAGGTCTCTGGCTCCTCCAATGGCGGCAAAGAACCCTCCAAGAACAAGATTGCATTGACGAACAAAGCTCATCACTCTAATGGGGGCTTGCATCATAAACAAGAAGAAAAGGCTGAAGAGCAGAAGGTGAAATTGGAGCTGAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

273

Amino Acids

29.26

Weight (kDa)

9.43

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02470 AT5G02470 AT5G02470
fragaria_vesca	FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010
malus_domestica	MD04G1126400.v1.1
prunus_persica	Prupe.6G253200_v2.0.a1 Prupe.6G253200_v2.0.a1
pyrus_communis	pycom04g11340
rosa_chinensis	RchiOBHm_Chr3g0466841
rosa_laevigata	RLG00000024547
rosa_multiflora	Rmu_sc0026100.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414090
rosa_rugosa	Rorug03G0083900 Rorug03G0084000 Rorug03G0084100
rosa_samantha	Rh3AG131700 Rh3BG152800 Rh3CG153000 Rh3DG153900
rosa_wichuraiana	Rw3G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	583
AccII	CGCG	4 cut(s)	570, 588, 618, 624
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	2 cut(s)	111, 261
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	807
AfiI	CCNNNNNNNGG	6 cut(s)	72, 183, 259, 292, 481, 609
AhdI	GACNNNNNGTC	1 cut(s)	674
AjnI	CCWGG	1 cut(s)	291
AjuI	GAANNNNNNNTTGG	6 cut(s)	434, 440, 466, 472, 788, 820
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	4 cut(s)	267, 466, 740, 811
AluI	AGCT	4 cut(s)	267, 466, 740, 811
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	346, 682
AlwI	GGATC	1 cut(s)	109
AlwNI	CAGNNNCTG	2 cut(s)	168, 270
Ama87I	CYCGRG	1 cut(s)	671
AoxI	GGCC	5 cut(s)	111, 261, 576, 597, 627
ApeKI	GCWGC	4 cut(s)	62, 128, 162, 511
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	7 cut(s)	434, 498, 521, 572, 588, 618, 620
AspS9I	GGNCC	5 cut(s)	174, 190, 295, 484, 634
AsuC2I	CCSGG	2 cut(s)	99, 260
AsuHPI	GGTGA	1 cut(s)	811
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	5 cut(s)	174, 190, 295, 484, 634
BaeGI	GKGCMC	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	4 cut(s)	49, 140, 174, 498
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	3 cut(s)	42, 491, 539
BciT130I	CCWGG	1 cut(s)	293
BcnI	CCSGG	2 cut(s)	99, 260
BcoDI	GTCTC	2 cut(s)	346, 682
BfoI	RGCGCY	1 cut(s)	499
BglI	GCCNNNNNGGC	1 cut(s)	605
BlpI	GCTNAGC	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	99, 260, 293
Bme18I	GGWCC	5 cut(s)	174, 190, 295, 484, 634
BmeRI	GACNNNNNGTC	1 cut(s)	674
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	5 cut(s)	174, 190, 295, 484, 634
BmiI	GGNNCC	6 cut(s)	30, 96, 175, 191, 485, 685
BmrFI	CCNGG	3 cut(s)	99, 260, 293
BmsI	GCATC	2 cut(s)	537, 772
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
Bpu1102I	GCTNAGC	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	99, 260
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	5 cut(s)	108, 573, 603, 630, 672
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 326, 356
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 183, 259, 292, 481, 609
Bse118I	RCCGGY	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	5 cut(s)	108, 573, 603, 630, 672
BseLI	CCNNNNNNNGG	6 cut(s)	72, 183, 259, 292, 481, 609
BseMII	CTCAG	1 cut(s)	68
BsePI	GCGCGC	1 cut(s)	616
BseRI	GAGGAG	7 cut(s)	132, 135, 138, 170, 318, 643, 676
BseSI	GKGCMC	1 cut(s)	359
BseX3I	CGGCCG	1 cut(s)	111
BseXI	GCAGC	4 cut(s)	49, 140, 174, 498
BsgI	GTGCAG	2 cut(s)	181, 217
Bsh1236I	CGCG	4 cut(s)	570, 588, 618, 624
Bsh1285I	CGRYCG	2 cut(s)	114, 475
BshFI	GGCC	5 cut(s)	113, 263, 578, 599, 629
BshNI	GGYRCC	1 cut(s)	94
BsiEI	CGRYCG	2 cut(s)	114, 475
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	4 cut(s)	98, 114, 132, 260
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	6 cut(s)	72, 183, 259, 292, 481, 609
BsmAI	GTCTC	2 cut(s)	346, 682
BsmBI	CGTCTC	1 cut(s)	346
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	5 cut(s)	113, 263, 578, 599, 629
Bso31I	GGTCTC	1 cut(s)	682
BsoBI	CYCGRG	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	359, 468
Bsp143I	GATC	2 cut(s)	101, 648
Bsp1720I	GCTNAGC	1 cut(s)	77
Bsp68I	TCGCGA	1 cut(s)	624
BspANI	GGCC	5 cut(s)	113, 263, 578, 599, 629
BspCNI	CTCAG	1 cut(s)	69
BspFNI	CGCG	4 cut(s)	570, 588, 618, 624
BspLI	GGNNCC	6 cut(s)	30, 96, 175, 191, 485, 685
BspPI	GGATC	1 cut(s)	109
BspQI	GCTCTTC	1 cut(s)	783
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	583
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	5 cut(s)	108, 573, 603, 630, 672
BssHII	GCGCGC	1 cut(s)	616
BssMI	GATC	2 cut(s)	101, 648
BssT1I	CCWWGG	2 cut(s)	603, 630
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	819
Bst6I	CTCTTC	2 cut(s)	293, 783
BstAPI	GCANNNNNTGC	2 cut(s)	168, 240
BstC8I	GCNNGC	7 cut(s)	133, 265, 425, 526, 618, 622, 761
BstDEI	CTNAG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstFNI	CGCG	4 cut(s)	570, 588, 618, 624
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	7 cut(s)	434, 498, 521, 572, 588, 618, 620
BstKTI	GATC	2 cut(s)	104, 651
BstMAI	GTCTC	2 cut(s)	346, 682
BstMBI	GATC	2 cut(s)	101, 648
BstMCI	CGRYCG	2 cut(s)	114, 475
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	97, 258, 291
BstSLI	GKGCMC	1 cut(s)	359
BstUI	CGCG	4 cut(s)	570, 588, 618, 624
BstV1I	GCAGC	4 cut(s)	49, 140, 174, 498
BstZI	CGGCCG	1 cut(s)	111
BsuRI	GGCC	5 cut(s)	113, 263, 578, 599, 629
BtgZI	GCGATG	1 cut(s)	514
BtuMI	TCGCGA	1 cut(s)	624
Cac8I	GCNNGC	7 cut(s)	133, 265, 425, 526, 618, 622, 761
CaiI	CAGNNNCTG	2 cut(s)	168, 270
CfoI	GCGC	7 cut(s)	434, 498, 521, 572, 588, 618, 620
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	5 cut(s)	174, 190, 295, 484, 634
CseI	GACGC	1 cut(s)	232
CviAII	CATG	1 cut(s)	544
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	103, 650
DpnII	GATC	2 cut(s)	101, 648
DriI	GACNNNNNGTC	1 cut(s)	674
EaeI	YGGCCR	2 cut(s)	111, 261
EagI	CGGCCG	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	293, 783
Eam1105I	GACNNNNNGTC	1 cut(s)	674
EarI	CTCTTC	2 cut(s)	293, 783
EciI	GGCGGA	4 cut(s)	153, 212, 239, 427
Ecl136II	GAGCTC	1 cut(s)	466
EclXI	CGGCCG	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	603, 630
Eco147I	AGGCCT	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	5 cut(s)	174, 190, 295, 484, 634
Eco52I	CGGCCG	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	671
EcoICRI	GAGCTC	1 cut(s)	466
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoO109I	RGGNCCY	2 cut(s)	190, 484
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	603, 630
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	2 cut(s)	603, 630
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	1 cut(s)	547
FaiI	YATR	2 cut(s)	545, 768
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	543
FauI	CCCGC	2 cut(s)	164, 432
FriOI	GRGCYC	1 cut(s)	468
GlaI	GCGC	7 cut(s)	433, 497, 520, 571, 587, 617, 619
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	5 cut(s)	113, 263, 578, 599, 629
HapII	CCGG	4 cut(s)	98, 114, 132, 260
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	7 cut(s)	434, 498, 521, 572, 588, 618, 620
Hin1II	CATG	1 cut(s)	547
Hin6I	GCGC	7 cut(s)	432, 496, 519, 570, 586, 616, 618
HinP1I	GCGC	7 cut(s)	432, 496, 519, 570, 586, 616, 618
HpaII	CCGG	4 cut(s)	98, 114, 132, 260
HphI	GGTGA	1 cut(s)	811
Hpy188I	TCNGA	3 cut(s)	19, 376, 612
Hpy188III	TCNNGA	1 cut(s)	623
Hpy99I	CGWCG	2 cut(s)	23, 473
HpyAV	CCTTC	4 cut(s)	175, 409, 466, 790
HpyCH4III	ACNGT	1 cut(s)	819
HpyCH4V	TGCA	4 cut(s)	162, 234, 725, 763
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	547
HspAI	GCGC	7 cut(s)	432, 496, 519, 570, 586, 616, 618
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	101, 648
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	5 cut(s)	34, 125, 353, 689, 808
Lsp1109I	GCAGC	4 cut(s)	49, 140, 174, 498
LweI	GCATC	2 cut(s)	537, 772
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	2 cut(s)	103, 650
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	2 cut(s)	101, 648
MboII	GAAGA	5 cut(s)	16, 280, 451, 788, 800
MhlI	GDGCHC	2 cut(s)	359, 468
MluCI	AATT	4 cut(s)	13, 310, 449, 803
MmeI	TCCRAC	3 cut(s)	42, 399, 685
MroNI	GCCGGC	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	750
MspI	CCGG	4 cut(s)	98, 114, 132, 260
MspR9I	CCNGG	3 cut(s)	99, 260, 293
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	4 cut(s)	570, 588, 618, 624
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	2 cut(s)	99, 260
NdeII	GATC	2 cut(s)	101, 648
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	547
NlaIV	GGNNCC	6 cut(s)	30, 96, 175, 191, 485, 685
NmeAIII	GCCGAG	3 cut(s)	89, 598, 604
NruI	TCGCGA	1 cut(s)	624
PauI	GCGCGC	1 cut(s)	616
PceI	AGGCCT	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PdiI	GCCGGC	1 cut(s)	133
PfoI	TCCNGGA	1 cut(s)	291
PpuMI	RGGWCCY	2 cut(s)	190, 484
Psp124BI	GAGCTC	1 cut(s)	468
Psp5II	RGGWCCY	2 cut(s)	190, 484
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	6 cut(s)	30, 96, 175, 191, 485, 685
PspPI	GGNCC	5 cut(s)	174, 190, 295, 484, 634
PspPPI	RGGWCCY	2 cut(s)	190, 484
PstNI	CAGNNNCTG	2 cut(s)	168, 270
PteI	GCGCGC	1 cut(s)	616
RruI	TCGCGA	1 cut(s)	624
RseI	CAYNNNNRTG	1 cut(s)	750
SacI	GAGCTC	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	783
Sau3AI	GATC	2 cut(s)	101, 648
Sau96I	GGNCC	5 cut(s)	174, 190, 295, 484, 634
ScrFI	CCNGG	3 cut(s)	99, 260, 293
SduI	GDGCHC	2 cut(s)	359, 468
SetI	ASST	9 cut(s)	87, 239, 269, 339, 468, 678, 742, 801, 813
SfaNI	GCATC	2 cut(s)	537, 772
SinI	GGWCC	5 cut(s)	174, 190, 295, 484, 634
SmiMI	CAYNNNNRTG	1 cut(s)	750
Sse9I	AATT	4 cut(s)	13, 310, 449, 803
SseBI	AGGCCT	1 cut(s)	629
SstI	GAGCTC	1 cut(s)	468
StuI	AGGCCT	1 cut(s)	629
StyD4I	CCNGG	3 cut(s)	97, 258, 291
StyI	CCWWGG	2 cut(s)	603, 630
TaaI	ACNGT	1 cut(s)	819
TaqI	TCGA	3 cut(s)	462, 468, 489
TasI	AATT	4 cut(s)	13, 310, 449, 803
TseI	GCWGC	4 cut(s)	62, 128, 162, 511
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	194, 646
VpaK11BI	GGWCC	5 cut(s)	174, 190, 295, 484, 634
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.