Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006506

Physical Location & Seq

Genomic Coordinates Reverse (-)

8587513 .. 8591693

Gene Structure 4181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14010.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAGGTTGAGTATTTCACGGATTCTTTTGGTGAGCTCTCTGGGGGACATTCTAGCCCAAAAACTCCCAGGTCAGCTTCGGTGAGCAATGCAGACAGTACGACTTTCTGTTGTGACAATACAAGTACACCGGATGTTGACAAAAGTGCGGGAAAGAAGAGAAGGGGTTCAAGATATACAGCTGGAGGTCTACGTCAGTTCAGTGCCATAGTTTGTAGCAAGTTGAAGAGCAAGGGAAGAGCAACATATGATGAGGTTGCAAATGAGATCATTGCAGAGTTACCTGGAATTTATGGTCAAACAGAAGCTTTGAGTGAGTATGATATGAAAAACATACGACGACGGGTATATGATGCACTAAATGTTCTTATGGCAATGGATATTATCACCAAAGAGAAAAAACAAATCTGGTGGAAGGGACTTCGAGATACAAATGCTATTGATCGGGAAGGTATTAAGGCTCAGCGTGTTAAATTGATGGGTAGGATTAATGCAAAGGAGGCTTACTTGAAAGACTTGGAAGAACAAATGGCAGATCTCCAGAATTTGATGTTGCGTAATAAGCAGTTGCTCAAGAGTGGGAACAGCAGCCACAAAGGATTTTCTTTTCCATTTATACTAGCTCAGACAAGCAATAATGCTACGGTTGAGATTGAGATTTCTGAAGACATGCAGTTGGTGCACTGCGACTTCAATAGTACTCCTTTCTCCTTGCACGATGATACTTCCATTCTAAAGATGTTGCGGTGCCGCCAATTGCCAGAAAGTAGAAATGTGTCTCAAAGTTCTTCAGTTTACTCTTCTTCAAGCTCTGGCATGGCTTCTACCAGACCCTTCCTTTGGAACTCGGAAACACAAACTCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000082 GO:0000278 GO:0000981 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031326 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044786 GO:0044843 GO:0046483 GO:0046982 GO:0046983 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1901576 GO:1903047 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04110 ko04350 map04110 map04350

Pfam Domains

Protein Families

DP E2F_TDP

Protein Analysis

290

Amino Acids

32.34

Weight (kDa)

8.69

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	62 - 140	2.2e-15	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	151 - 260	7.5e-28	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02470 AT5G02470 AT5G02470
fragaria_vesca	FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010 FvH4_6g14010
malus_domestica	MD04G1126400.v1.1
prunus_persica	Prupe.6G253200_v2.0.a1 Prupe.6G253200_v2.0.a1
pyrus_communis	pycom04g11340
rosa_chinensis	RchiOBHm_Chr3g0466841
rosa_laevigata	RLG00000024547
rosa_multiflora	Rmu_sc0026100.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414090
rosa_rugosa	Rorug03G0083900 Rorug03G0084000 Rorug03G0084100
rosa_samantha	Rh3AG131700 Rh3BG152800 Rh3CG153000 Rh3DG153900
rosa_wichuraiana	Rw3G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	3 cut(s)	149, 745, 751
AcsI	RAATTY	2 cut(s)	288, 544
AcuI	CTGAAG	2 cut(s)	684, 774
AfaI	GTAC	3 cut(s)	100, 127, 700
AfiI	CCNNNNNNNGG	1 cut(s)	840
AgsI	TTSAA	5 cut(s)	171, 226, 511, 694, 807
AjnI	CCWGG	2 cut(s)	68, 283
AluBI	AGCT	6 cut(s)	37, 77, 182, 308, 623, 810
AluI	AGCT	6 cut(s)	37, 77, 182, 308, 623, 810
Alw21I	GWGCWC	2 cut(s)	39, 684
Alw26I	GTCTC	1 cut(s)	783
Alw44I	GTGCAC	1 cut(s)	680
ApaLI	GTGCAC	1 cut(s)	680
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	2 cut(s)	288, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	822, 854
AseI	ATTAAT	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	44, 94, 379
BaeGI	GKGCMC	1 cut(s)	684
BanI	GGYRCC	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	672
Bbv12I	GWGCWC	2 cut(s)	39, 684
BbvI	GCAGC	1 cut(s)	600
BccI	CCATC	1 cut(s)	472
BciT130I	CCWGG	2 cut(s)	70, 285
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	2 cut(s)	54, 620
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	589, 751
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	2 cut(s)	590, 752
BmcAI	AGTACT	1 cut(s)	700
Bme1390I	CCNGG	2 cut(s)	70, 285
BmiI	GGNNCC	1 cut(s)	749
BmrFI	CCNGG	2 cut(s)	70, 285
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	672
BpmI	CTGGAG	2 cut(s)	204, 524
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	840
Bse3DI	GCAATG	3 cut(s)	94, 270, 381
BseBI	CCWGG	2 cut(s)	70, 285
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	840
BseMI	GCAATG	3 cut(s)	94, 270, 381
BseMII	CTCAG	2 cut(s)	476, 638
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	1 cut(s)	600
BshNI	GGYRCC	1 cut(s)	747
BsiHKAI	GWGCWC	2 cut(s)	39, 684
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	2 cut(s)	60, 432
BslI	CCNNNNNNNGG	1 cut(s)	840
BsmAI	GTCTC	1 cut(s)	783
BsmFI	GGGAC	2 cut(s)	60, 432
Bsp1286I	GDGCHC	2 cut(s)	39, 684
Bsp143I	GATC	3 cut(s)	267, 442, 535
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	3 cut(s)	149, 745, 751
BspCNI	CTCAG	2 cut(s)	475, 637
BspLI	GGNNCC	1 cut(s)	749
BspQI	GCTCTTC	2 cut(s)	221, 232
BspT107I	GGYRCC	1 cut(s)	747
BsrDI	GCAATG	3 cut(s)	94, 270, 381
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	267, 442, 535
Bst2UI	CCWGG	2 cut(s)	70, 285
Bst4CI	ACNGT	2 cut(s)	98, 646
Bst6I	CTCTTC	4 cut(s)	152, 221, 232, 805
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstDEI	CTNAG	2 cut(s)	462, 624
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	270, 445, 538
BstMAI	GTCTC	1 cut(s)	783
BstMBI	GATC	3 cut(s)	267, 442, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	500, 562, 679
BstNI	CCWGG	2 cut(s)	70, 285
BstNSI	RCATGY	1 cut(s)	673
BstSCI	CCNGG	2 cut(s)	68, 283
BstSLI	GKGCMC	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	600
BstV2I	GAAGAC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	2 cut(s)	208, 682
Csp6I	GTAC	3 cut(s)	99, 126, 699
CspCI	CAANNNNNGTGG	2 cut(s)	392, 427
CviAII	CATG	2 cut(s)	670, 817
CviQI	GTAC	3 cut(s)	99, 126, 699
DdeI	CTNAG	2 cut(s)	462, 624
DpnI	GATC	3 cut(s)	269, 444, 537
DpnII	GATC	3 cut(s)	267, 442, 535
Eam1104I	CTCTTC	4 cut(s)	152, 221, 232, 805
EarI	CTCTTC	4 cut(s)	152, 221, 232, 805
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
Eco57I	CTGAAG	2 cut(s)	684, 774
EcoICRI	GAGCTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	68, 283
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	2 cut(s)	673, 820
FaqI	GGGAC	2 cut(s)	60, 432
FatI	CATG	2 cut(s)	669, 816
FauI	CCCGC	1 cut(s)	142
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	589, 751
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	589, 751
FspBI	CTAG	2 cut(s)	54, 620
GluI	GCNGC	2 cut(s)	589, 751
GsuI	CTGGAG	2 cut(s)	204, 524
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	673, 820
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	3 cut(s)	44, 94, 379
Hpy166II	GTNNAC	5 cut(s)	128, 139, 191, 682, 796
Hpy188I	TCNGA	3 cut(s)	627, 664, 850
Hpy188III	TCNNGA	5 cut(s)	171, 425, 446, 541, 574
Hpy8I	GTNNAC	5 cut(s)	128, 139, 191, 682, 796
Hpy99I	CGWCG	2 cut(s)	342, 345
HpyAV	CCTTC	4 cut(s)	156, 409, 443, 844
HpyCH4III	ACNGT	2 cut(s)	98, 646
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	8 cut(s)	92, 260, 275, 356, 494, 673, 682, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	500, 562, 679
HpyF3I	CTNAG	2 cut(s)	462, 624
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	673, 820
Kzo9I	GATC	3 cut(s)	267, 442, 535
LguI	GCTCTTC	2 cut(s)	221, 232
Lsp1109I	GCAGC	1 cut(s)	600
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	2 cut(s)	54, 620
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	113, 279
MalI	GATC	3 cut(s)	269, 444, 537
MboI	GATC	3 cut(s)	267, 442, 535
MboII	GAAGA	8 cut(s)	169, 238, 249, 533, 677, 780, 792, 795
MfeI	CAATTG	1 cut(s)	755
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	2 cut(s)	39, 684
MluCI	AATT	4 cut(s)	288, 473, 544, 755
MnlI	CCTC	3 cut(s)	179, 247, 493
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	3 cut(s)	456, 471, 489
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	70, 285
MunI	CAATTG	1 cut(s)	755
MvaI	CCWGG	2 cut(s)	70, 285
MwoI	GCNNNNNNNGC	3 cut(s)	500, 562, 679
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	3 cut(s)	267, 442, 535
NlaIII	CATG	2 cut(s)	673, 820
NlaIV	GGNNCC	1 cut(s)	749
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	673
PciSI	GCTCTTC	2 cut(s)	221, 232
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	590, 752
PshBI	ATTAAT	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	39
Psp6I	CCWGG	2 cut(s)	68, 283
PspGI	CCWGG	2 cut(s)	68, 283
PspN4I	GGNNCC	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	3 cut(s)	100, 127, 700
RsaNI	GTAC	3 cut(s)	99, 126, 699
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	2 cut(s)	221, 232
SaqAI	TTAA	3 cut(s)	456, 471, 489
SatI	GCNGC	2 cut(s)	589, 751
Sau3AI	GATC	3 cut(s)	267, 442, 535
ScaI	AGTACT	1 cut(s)	700
ScrFI	CCNGG	2 cut(s)	70, 285
SduI	GDGCHC	2 cut(s)	39, 684
SfaNI	GCATC	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	4 cut(s)	288, 473, 544, 755
SsiI	CCGC	3 cut(s)	149, 745, 751
SspMI	CTAG	2 cut(s)	54, 620
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	68, 283
TaaI	ACNGT	2 cut(s)	98, 646
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	424
TasI	AATT	4 cut(s)	288, 473, 544, 755
TatI	WGTACW	2 cut(s)	125, 698
TauI	GCSGC	1 cut(s)	753
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	3 cut(s)	456, 471, 489
Tru9I	TTAA	3 cut(s)	456, 471, 489
TscAI	CASTG	2 cut(s)	208, 689
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	588
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	208, 689
VneI	GTGCAC	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	2 cut(s)	288, 544
XceI	RCATGY	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	2 cut(s)	54, 620
ZrmI	AGTACT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.