AT5G02740

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012360
Physical Location & Seq
Forward (+)
616424 .. 618848
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02740.1

Sequence Viewer

Length: 687 bp
ATGAGTATCACTCGTAGCGCGATCAGATCGAGTTTGTGTCTCCGGAAATTGGATCCGGAAATCAGTCGTAGCTCGCTTCCGTTTCTTCAAGAGTGGAGGAAATGCCTATCTACCGCCACGGAGCAGCCTCCTCCTGCCTCTCCGTTACCACCGCCTCCGGGAGGTTCTCCGGGAGAAGGGAGGTTTTATGGGAAGTTTTCAGGCTTTTCAAAACATGCTCTGAAGACAGACATAATGAACGTACTCGAGGGCTGCAGTCTGACATCAGATGATCTCAAATTCAACTATCCGCGTGGCGGAAACTTAACTCCTGCGGCAGTCTTTGTGCAGTTCCCATCCCTTTCCGCATATGATAAAGCACTGCGGAATATCGCAAAGAAAGGAAAGCTATATAGATTAGAAAAGGCTGCTCGTGCTCAGTGGGATCCCATTGTTCCTTATGAGGGGAAAGTGGTTGCACTACATGGGATTCCGGTGAATGCTATAACAGATGACATAGATAGGTTCTTATCTGGCTGTCTCTATTATCCTGGATCCATCCAGTTCCTCACAGTTCAAGGACTTGGAACTTCAAAGAGGGTAGCATTGGTGCGTTTCACATCACAAACCCAGGCAATGAACGCATACATTACAAAGAACAGGAACTTCCTTCTCAACCAACGAATCACATTGCAAGTTCTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.22

Weight (kDa)

9.8

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 20, 292
AccIII TCCGGA 2 cut(s) 42, 55
AciI CCGC 7 cut(s) 114, 152, 290, 297, 314, 345, 364
AclWI GGATC 6 cut(s) 47, 60, 419, 432, 528, 541
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 6 cut(s) 49, 158, 161, 176, 296, 443
AgsI TTSAA 5 cut(s) 89, 210, 283, 557, 573
AjnI CCWGG 2 cut(s) 529, 609
AluBI AGCT 2 cut(s) 72, 388
AluI AGCT 2 cut(s) 72, 388
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 44, 524
AlwI GGATC 6 cut(s) 47, 60, 419, 432, 528, 541
Ama87I CYCGRG 1 cut(s) 245
Aor13HI TCCGGA 2 cut(s) 42, 55
ApeKI GCWGC 3 cut(s) 124, 252, 407
ApoI RAATTY 1 cut(s) 278
AspLEI GCGC 1 cut(s) 20
AsuC2I CCSGG 2 cut(s) 159, 171
AsuHPI GGTGA 1 cut(s) 487
AvaI CYCGRG 1 cut(s) 245
BamHI GGATCC 3 cut(s) 52, 424, 533
BauI CACGAG 1 cut(s) 411
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 136, 239, 394
BccI CCATC 2 cut(s) 343, 545
BciT130I CCWGG 2 cut(s) 531, 611
BcnI CCSGG 2 cut(s) 159, 171
BcoDI GTCTC 2 cut(s) 44, 524
BfmI CTRYAG 2 cut(s) 253, 680
BisI GCNGC 4 cut(s) 125, 253, 315, 408
BlsI GCNGC 4 cut(s) 126, 254, 316, 409
Bme1390I CCNGG 4 cut(s) 159, 171, 531, 611
BmeT110I CYCGRG 1 cut(s) 245
BmiI GGNNCC 3 cut(s) 54, 426, 535
BmrFI CCNGG 4 cut(s) 159, 171, 531, 611
BpiI GAAGAC 1 cut(s) 230
BplI GAGNNNNNCTC 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 159, 171
BsaJI CCNNGG 2 cut(s) 117, 609
BsaWI WCCGGW 3 cut(s) 42, 55, 472
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 158, 161, 176, 296, 443
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 2 cut(s) 621, 668
BseAI TCCGGA 2 cut(s) 42, 55
BseBI CCWGG 2 cut(s) 531, 611
BseDI CCNNGG 2 cut(s) 117, 609
BseGI GGATG 2 cut(s) 335, 537
BseLI CCNNNNNNNGG 6 cut(s) 49, 158, 161, 176, 296, 443
BseMI GCAATG 2 cut(s) 621, 668
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 136, 239, 394
BsgI GTGCAG 1 cut(s) 347
Bsh1236I CGCG 2 cut(s) 20, 292
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 5 cut(s) 43, 56, 158, 170, 473
BslI CCNNNNNNNGG 6 cut(s) 49, 158, 161, 176, 296, 443
BsmAI GTCTC 2 cut(s) 44, 524
BsmI GAATGC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 418
Bsp13I TCCGGA 2 cut(s) 42, 55
Bsp143I GATC 6 cut(s) 21, 26, 52, 271, 424, 533
BspACI CCGC 7 cut(s) 114, 152, 290, 297, 314, 345, 364
BspCNI CTCAG 1 cut(s) 430
BspEI TCCGGA 2 cut(s) 42, 55
BspFNI CGCG 2 cut(s) 20, 292
BspLI GGNNCC 3 cut(s) 54, 426, 535
BspMAI CTGCAG 2 cut(s) 257, 684
BspPI GGATC 6 cut(s) 47, 60, 419, 432, 528, 541
BsrDI GCAATG 2 cut(s) 621, 668
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 117, 609
BssMI GATC 6 cut(s) 21, 26, 52, 271, 424, 533
BssSI CACGAG 1 cut(s) 411
Bst2BI CACGAG 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 531, 611
Bst4CI ACNGT 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 679
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 417
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 335, 537
BstFNI CGCG 2 cut(s) 20, 292
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 6 cut(s) 24, 29, 55, 274, 427, 536
BstMAI GTCTC 2 cut(s) 44, 524
BstMBI GATC 6 cut(s) 21, 26, 52, 271, 424, 533
BstMWI GCNNNNNNNGC 3 cut(s) 413, 620, 679
BstNI CCWGG 2 cut(s) 531, 611
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 4 cut(s) 157, 169, 529, 609
BstSFI CTRYAG 2 cut(s) 253, 680
BstUI CGCG 2 cut(s) 20, 292
BstV1I GCAGC 3 cut(s) 136, 239, 394
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 3 cut(s) 52, 424, 533
BstYI RGATCY 3 cut(s) 52, 424, 533
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 335, 537
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 2 cut(s) 359, 425
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 242
CviAII CATG 2 cut(s) 215, 464
CviJI RGCY 7 cut(s) 72, 127, 204, 252, 388, 407, 516
CviKI_1 RGCY 7 cut(s) 72, 127, 204, 252, 388, 407, 516
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 417
DpnI GATC 6 cut(s) 23, 28, 54, 273, 426, 535
DpnII GATC 6 cut(s) 21, 26, 52, 271, 424, 533
EciI GGCGGA 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 529, 609
FaeI CATG 2 cut(s) 218, 467
FatI CATG 2 cut(s) 214, 463
FauNDI CATATG 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 125, 253, 315, 408
FokI GGATG 2 cut(s) 322, 524
Fsp4HI GCNGC 4 cut(s) 125, 253, 315, 408
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 125, 253, 315, 408
HapII CCGG 5 cut(s) 43, 56, 158, 170, 473
HhaI GCGC 1 cut(s) 20
Hin1II CATG 2 cut(s) 218, 467
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 2 cut(s) 469, 663
HpaII CCGG 5 cut(s) 43, 56, 158, 170, 473
HphI GGTGA 1 cut(s) 487
Hpy188I TCNGA 4 cut(s) 26, 222, 261, 268
Hpy188III TCNNGA 3 cut(s) 43, 56, 89
HpyAV CCTTC 2 cut(s) 170, 659
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 5 cut(s) 255, 328, 458, 673, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 620, 679
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 218, 467
HspAI GCGC 1 cut(s) 18
Kpn2I TCCGGA 2 cut(s) 42, 55
Kzo9I GATC 6 cut(s) 21, 26, 52, 271, 424, 533
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 3 cut(s) 136, 239, 394
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 144
MalI GATC 6 cut(s) 23, 28, 54, 273, 426, 535
MboI GATC 6 cut(s) 21, 26, 52, 271, 424, 533
MboII GAAGA 2 cut(s) 77, 235
MflI RGATCY 3 cut(s) 52, 424, 533
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 2 cut(s) 47, 278
MroI TCCGGA 2 cut(s) 42, 55
MseI TTAA 1 cut(s) 305
MspI CCGG 5 cut(s) 43, 56, 158, 170, 473
MspR9I CCNGG 4 cut(s) 159, 171, 531, 611
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 2 cut(s) 531, 611
MvnI CGCG 2 cut(s) 20, 292
MwoI GCNNNNNNNGC 3 cut(s) 413, 620, 679
NciI CCSGG 2 cut(s) 159, 171
NdeI CATATG 1 cut(s) 349
NdeII GATC 6 cut(s) 21, 26, 52, 271, 424, 533
NlaIII CATG 2 cut(s) 218, 467
NlaIV GGNNCC 3 cut(s) 54, 426, 535
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 245
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 2 cut(s) 469, 663
PfoI TCCNGGA 3 cut(s) 157, 169, 529
PkrI GCNGC 4 cut(s) 126, 254, 316, 409
Psp6I CCWGG 2 cut(s) 529, 609
PspGI CCWGG 2 cut(s) 529, 609
PspN4I GGNNCC 3 cut(s) 54, 426, 535
PspXI VCTCGAGB 1 cut(s) 245
PstI CTGCAG 2 cut(s) 257, 684
PsuI RGATCY 3 cut(s) 52, 424, 533
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 4 cut(s) 125, 253, 315, 408
Sau3AI GATC 6 cut(s) 21, 26, 52, 271, 424, 533
ScrFI CCNGG 4 cut(s) 159, 171, 531, 611
SduI GDGCHC 1 cut(s) 418
SetI ASST 6 cut(s) 74, 166, 185, 243, 390, 506
SfcI CTRYAG 2 cut(s) 253, 680
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 47, 278
SsiI CCGC 7 cut(s) 114, 152, 290, 297, 314, 345, 364
StyD4I CCNGG 4 cut(s) 157, 169, 529, 609
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 29, 246
TasI AATT 2 cut(s) 47, 278
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 2 cut(s) 469, 663
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 2 cut(s) 366, 425
TseI GCWGC 3 cut(s) 124, 252, 407
TspDTI ATGAA 2 cut(s) 251, 632
TspGWI ACGGA 3 cut(s) 69, 132, 134
TspRI CASTG 2 cut(s) 366, 425
XagI CCTNNNNNAGG 1 cut(s) 159
XapI RAATTY 1 cut(s) 278
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.