Rh3BG161800

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012360
Physical Location & Seq
Forward (+)
13965283 .. 13971364
6082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG161800.1

Sequence Viewer

Length: 624 bp
ATGTCAAAGCTGGGACTCCTCCGAACCTCAATCAGGTCAACCCTCGCCGCCCGTTCACAAAACCACCGCCTCCTCCCTTCCCTCCTCCGCGAGCCGCAGAGACGCTTCTCCACGGAAGCGGGGCAACCGCCTCAGGACTCGGCACCCGTACAACCACCGCCGTCTCTGGATGCAACGGTCGACCAATTTGTTCAAAACCCAAGCGGAGGTGTGGTGTATGGGAAATTGCTTGGGATTACAAGGAATACATTGAAGACCGACATTGTGAACTTGCTGGAAGGCTGTAATCTGAGGCTGGAAGATGTTAAAGTTCAGTACAATGGGCCTTTCGTGCCGTCGGGAATGATGGTGCAATTTCCTTCGCAAAGAGCTTATGAGACTGCATTTAGGGCGATTAGCCGATTGGGCCAGGTGTTCAGATTGGAAAGGTCCGATCGACAGAGGTGGGATGCCGTAACTCATTATGATGGAAAAACTGTTTTAATAGAGGGAATCCCTAGAATTGCAAATACGGAAGACGTGGAGCGCTTTCTGTCTGGGACTCCTTATGTGTCCTCCTCCGTTCAACTCTTTATGAAGTTAGTGCCTAGTTTATTGTGTATAATGTATTACATATATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.29

Weight (kDa)

9.51

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 90
AciI CCGC 8 cut(s) 48, 67, 88, 95, 119, 128, 158, 204
AfaI GTAC 2 cut(s) 150, 317
AfeI AGCGCT 1 cut(s) 527
AfiI CCNNNNNNNGG 2 cut(s) 33, 206
AgsI TTSAA 3 cut(s) 194, 253, 566
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 1 cut(s) 408
AluBI AGCT 2 cut(s) 10, 371
AluI AGCT 2 cut(s) 10, 371
Alw26I GTCTC 3 cut(s) 94, 168, 371
Aor51HI AGCGCT 1 cut(s) 527
AoxI GGCC 2 cut(s) 323, 406
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 3 cut(s) 323, 406, 429
AvaII GGWCC 1 cut(s) 429
AxyI CCTNAGG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 2 cut(s) 260, 522
BccI CCATC 2 cut(s) 340, 461
BceAI ACGGC 3 cut(s) 145, 319, 437
BciT130I CCWGG 1 cut(s) 410
BcoDI GTCTC 3 cut(s) 94, 168, 371
BfaI CTAG 2 cut(s) 498, 588
BfoI RGCGCY 1 cut(s) 529
BglI GCCNNNNNGGC 1 cut(s) 405
BisI GCNGC 2 cut(s) 48, 95
BlsI GCNGC 2 cut(s) 49, 96
Bme1390I CCNGG 1 cut(s) 410
Bme18I GGWCC 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 3 cut(s) 323, 406, 429
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 410
BmsI GCATC 2 cut(s) 160, 439
BpiI GAAGAC 2 cut(s) 260, 522
BsaJI CCNNGG 1 cut(s) 111
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 206
Bse21I CCTNAGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 410
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 175, 454
BseLI CCNNNNNNNGG 2 cut(s) 33, 206
BseMII CTCAG 2 cut(s) 146, 281
BseRI GAGGAG 4 cut(s) 8, 62, 74, 547
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 2 cut(s) 180, 436
BshFI GGCC 2 cut(s) 325, 408
BshNI GGYRCC 1 cut(s) 142
BsiEI CGRYCG 2 cut(s) 180, 436
BslFI GGGAC 2 cut(s) 27, 553
BslI CCNNNNNNNGG 2 cut(s) 33, 206
BsmAI GTCTC 3 cut(s) 94, 168, 371
BsmBI CGTCTC 2 cut(s) 94, 168
BsmFI GGGAC 2 cut(s) 27, 553
BsnI GGCC 2 cut(s) 325, 408
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 8 cut(s) 48, 67, 88, 95, 119, 128, 158, 204
BspANI GGCC 2 cut(s) 325, 408
BspCNI CTCAG 2 cut(s) 145, 282
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 433
Bst2UI CCWGG 1 cut(s) 410
Bst4CI ACNGT 2 cut(s) 178, 478
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 132, 290
BstDSI CCRYGG 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 175, 454
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 3 cut(s) 94, 168, 371
BstMBI GATC 1 cut(s) 433
BstMCI CGRYCG 2 cut(s) 180, 436
BstMWI GCNNNNNNNGC 3 cut(s) 331, 389, 405
BstNI CCWGG 1 cut(s) 410
BstSCI CCNGG 1 cut(s) 408
BstUI CGCG 1 cut(s) 90
BstV2I GAAGAC 2 cut(s) 260, 522
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 2 cut(s) 325, 408
BtgI CCRYGG 1 cut(s) 111
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 175, 454
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 528
Cfr13I GGNCC 3 cut(s) 323, 406, 429
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 149, 316
CviJI RGCY 8 cut(s) 10, 94, 282, 295, 325, 371, 399, 408
CviKI_1 RGCY 8 cut(s) 10, 94, 282, 295, 325, 371, 399, 408
CviQI GTAC 2 cut(s) 149, 316
DdeI CTNAG 2 cut(s) 132, 290
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 429
Eco47III AGCGCT 1 cut(s) 527
Eco81I CCTNAGG 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 408
Esp3I CGTCTC 2 cut(s) 94, 168
FaiI YATR 8 cut(s) 219, 375, 465, 549, 575, 602, 614, 616
FaqI GGGAC 2 cut(s) 27, 553
FauI CCCGC 1 cut(s) 112
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 48, 95
FokI GGATG 2 cut(s) 182, 461
Fsp4HI GCNGC 2 cut(s) 48, 95
FspBI CTAG 2 cut(s) 498, 588
GlaI GCGC 1 cut(s) 527
GluI GCNGC 2 cut(s) 48, 95
GsaI CCCAGC 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 529
HaeIII GGCC 2 cut(s) 325, 408
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 528
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 2 cut(s) 39, 181
HindII GTYRAC 2 cut(s) 39, 181
HinfI GANTC 4 cut(s) 15, 137, 492, 541
Hpy166II GTNNAC 4 cut(s) 39, 56, 181, 268
Hpy188I TCNGA 4 cut(s) 23, 291, 419, 433
Hpy188III TCNNGA 3 cut(s) 134, 167, 339
Hpy8I GTNNAC 4 cut(s) 39, 56, 181, 268
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 3 cut(s) 87, 272, 369
HpyCH4III ACNGT 2 cut(s) 178, 478
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 4 cut(s) 173, 352, 383, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 331, 389, 405
HpyF3I CTNAG 2 cut(s) 132, 290
HpySE526I ACGT 1 cut(s) 519
HspAI GCGC 1 cut(s) 526
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 523
LpnPI CCDG 8 cut(s) 19, 119, 152, 260, 281, 395, 422, 522
LweI GCATC 2 cut(s) 160, 439
MaeI CTAG 2 cut(s) 498, 588
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 454
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 3 cut(s) 265, 311, 527
MluCI AATT 4 cut(s) 185, 224, 353, 501
MlyI GAGTC 3 cut(s) 9, 131, 535
MseI TTAA 3 cut(s) 306, 482, 622
MslI CAYNNNNRTG 1 cut(s) 465
MspR9I CCNGG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 410
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 331, 389, 405
NdeII GATC 1 cut(s) 433
NlaIV GGNNCC 1 cut(s) 144
NmeAIII GCCGAG 1 cut(s) 119
PfeI GAWTC 1 cut(s) 492
PkrI GCNGC 2 cut(s) 49, 96
Ple19I CGATCG 1 cut(s) 436
PleI GAGTC 3 cut(s) 9, 131, 535
PpsI GAGTC 3 cut(s) 9, 131, 535
Psp6I CCWGG 1 cut(s) 408
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 3 cut(s) 323, 406, 429
PvuI CGATCG 1 cut(s) 436
RsaI GTAC 2 cut(s) 150, 317
RsaNI GTAC 2 cut(s) 149, 316
RseI CAYNNNNRTG 1 cut(s) 465
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 306, 482, 622
SatI GCNGC 2 cut(s) 48, 95
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 3 cut(s) 323, 406, 429
SchI GAGTC 3 cut(s) 9, 131, 535
ScrFI CCNGG 1 cut(s) 410
SetI ASST 9 cut(s) 12, 29, 38, 211, 373, 414, 431, 446, 522
SfaNI GCATC 2 cut(s) 160, 439
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 4 cut(s) 185, 224, 353, 501
SsiI CCGC 8 cut(s) 48, 67, 88, 95, 119, 128, 158, 204
SspMI CTAG 2 cut(s) 498, 588
StyD4I CCNGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 178, 478
TaiI ACGT 1 cut(s) 522
TaqI TCGA 2 cut(s) 180, 436
TaqII GACCGA 1 cut(s) 272
TasI AATT 4 cut(s) 185, 224, 353, 501
TatI WGTACW 1 cut(s) 315
TauI GCSGC 2 cut(s) 50, 97
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 3 cut(s) 306, 482, 622
Tru9I TTAA 3 cut(s) 306, 482, 622
TspDTI ATGAA 1 cut(s) 590
TspGWI ACGGA 3 cut(s) 128, 527, 550
VpaK11BI GGWCC 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 2 cut(s) 498, 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.