pycom13g21250

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012360
Physical Location & Seq
Forward (+)
17578331 .. 17579198
868 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g21250.4

Sequence Viewer

Length: 477 bp
ATGCTCCTCGGCGAACCGGCGAGACGGTTCTCGACGGAAGCCGAAAACCCGCCTCAGAACTCCCCGCCGTCTGATCAGCCGCAGGATGCTTCACCGATCGAACCATTTCTCCAAACCCCAACCACAGGTTTGGTGTATGGGAAGCTGCTTGGAATCTCGAGGTATACGCTGAAGACGGATGTCGTGAATATGCTGGAGGGCTGCAATTTGAGCCTGGAGGATGTCAAAGTTGATTACAATCGGGCCTTCACGCCGATGGGAATGGTAGTGCAATTCCGGTCATGGAAAGCTTTTGATAATGCAGCTAGGGTGATTTCCAGGAAGGGCCGCCTGTTTAAATTGGAGAGGTGTGCTGATGGGAAAAACTGTAAGTCAAGGTTTTCTATTGCATGCTTATTATTGTTTTCAGTGAAATGTTTGATAAAGTTGGTCGTGTTTGGAGTTACTCTTCGTGCAGCAAATTCTCTTGCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.55

Weight (kDa)

9.37

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 164
AciI CCGC 4 cut(s) 50, 65, 80, 328
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 125
AjnI CCWGG 2 cut(s) 213, 317
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 3 cut(s) 145, 290, 305
AluI AGCT 3 cut(s) 145, 290, 305
Alw26I GTCTC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 2 cut(s) 243, 325
ApeKI GCWGC 4 cut(s) 145, 201, 302, 455
ApoI RAATTY 1 cut(s) 460
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 243, 325
AsuHPI GGTGA 2 cut(s) 84, 322
AvaI CYCGRG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 4 cut(s) 132, 188, 314, 467
BccI CCATC 2 cut(s) 250, 350
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 215, 319
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 1 cut(s) 306
BisI GCNGC 6 cut(s) 80, 146, 202, 303, 328, 456
BlsI GCNGC 6 cut(s) 81, 147, 203, 304, 329, 457
Bme1390I CCNGG 2 cut(s) 215, 319
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 243, 325
BmrFI CCNGG 2 cut(s) 215, 319
BmsI GCATC 1 cut(s) 76
BoxI GACNNNNGTC 1 cut(s) 179
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 2 cut(s) 215, 236
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 2 cut(s) 215, 319
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 3 cut(s) 91, 184, 226
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 4 cut(s) 132, 188, 314, 467
BsgI GTGCAG 1 cut(s) 474
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 245, 327
BsiEI CGRYCG 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 17, 277
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 2 cut(s) 245, 327
BsoBI CYCGRG 1 cut(s) 157
Bsp143I GATC 2 cut(s) 73, 96
BspACI CCGC 4 cut(s) 50, 65, 80, 328
BspANI GGCC 2 cut(s) 245, 327
BspCNI CTCAG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 73, 96
BssNAI GTATAC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 215, 319
Bst4CI ACNGT 2 cut(s) 27, 368
Bst6I CTCTTC 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 91, 184, 226
BstKTI GATC 2 cut(s) 76, 99
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 2 cut(s) 73, 96
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 2 cut(s) 215, 319
BstNSI RCATGY 1 cut(s) 393
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 213, 317
BstV1I GCAGC 4 cut(s) 132, 188, 314, 467
BstV2I GAAGAC 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 130
BstZ17I GTATAC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 245, 327
BtsCI GGATG 3 cut(s) 91, 184, 226
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 243, 325
CviAII CATG 2 cut(s) 282, 390
CviJI RGCY 9 cut(s) 41, 79, 145, 201, 213, 245, 290, 305, 327
CviKI_1 RGCY 9 cut(s) 41, 79, 145, 201, 213, 245, 290, 305, 327
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 75, 98
DpnII GATC 2 cut(s) 73, 96
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 157
EcoRII CCWGG 2 cut(s) 213, 317
Esp3I CGTCTC 1 cut(s) 16
FaeI CATG 2 cut(s) 285, 393
FaiI YATR 6 cut(s) 138, 165, 191, 283, 391, 473
FatI CATG 2 cut(s) 281, 389
FauI CCCGC 2 cut(s) 57, 72
FbaI TGATCA 1 cut(s) 73
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 6 cut(s) 80, 146, 202, 303, 328, 456
FokI GGATG 3 cut(s) 98, 191, 233
Fsp4HI GCNGC 6 cut(s) 80, 146, 202, 303, 328, 456
FspBI CTAG 1 cut(s) 306
GluI GCNGC 6 cut(s) 80, 146, 202, 303, 328, 456
GsuI CTGGAG 2 cut(s) 215, 236
HaeIII GGCC 2 cut(s) 245, 327
HapII CCGG 2 cut(s) 17, 277
Hin1II CATG 2 cut(s) 285, 393
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 1 cut(s) 153
HpaII CCGG 2 cut(s) 17, 277
HphI GGTGA 2 cut(s) 84, 322
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 57, 73
Hpy188III TCNNGA 3 cut(s) 31, 157, 184
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 256, 316
HpyCH4III ACNGT 2 cut(s) 27, 368
HpyCH4V TGCA 5 cut(s) 204, 271, 302, 389, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 2 cut(s) 285, 393
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 73, 96
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 4 cut(s) 132, 188, 314, 467
LweI GCATC 1 cut(s) 76
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 1 cut(s) 442
MalI GATC 2 cut(s) 75, 98
MboI GATC 2 cut(s) 73, 96
MboII GAAGA 2 cut(s) 184, 440
MluCI AATT 4 cut(s) 205, 272, 338, 460
MnlI CCTC 6 cut(s) 17, 63, 153, 190, 211, 339
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 2 cut(s) 17, 277
MspR9I CCNGG 2 cut(s) 215, 319
MvaI CCWGG 2 cut(s) 215, 319
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 2 cut(s) 73, 96
NlaIII CATG 2 cut(s) 285, 393
NspI RCATGY 1 cut(s) 393
PaeI GCATGC 1 cut(s) 393
PaeR7I CTCGAG 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 6 cut(s) 81, 147, 203, 304, 329, 457
Ple19I CGATCG 1 cut(s) 99
PshAI GACNNNNGTC 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 213, 317
PspGI CCWGG 2 cut(s) 213, 317
PspPI GGNCC 2 cut(s) 243, 325
PvuI CGATCG 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 6 cut(s) 80, 146, 202, 303, 328, 456
Sau3AI GATC 2 cut(s) 73, 96
Sau96I GGNCC 2 cut(s) 243, 325
ScrFI CCNGG 2 cut(s) 215, 319
SetI ASST 7 cut(s) 130, 147, 164, 292, 307, 350, 380
SfaNI GCATC 1 cut(s) 76
Sfr274I CTCGAG 1 cut(s) 157
SlaI CTCGAG 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
SphI GCATGC 1 cut(s) 393
Sse9I AATT 4 cut(s) 205, 272, 338, 460
SsiI CCGC 4 cut(s) 50, 65, 80, 328
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 213, 317
TaaI ACNGT 2 cut(s) 27, 368
TaqI TCGA 3 cut(s) 32, 99, 158
TasI AATT 4 cut(s) 205, 272, 338, 460
TauI GCSGC 2 cut(s) 82, 330
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 414
TseI GCWGC 4 cut(s) 145, 201, 302, 455
TspGWI ACGGA 2 cut(s) 50, 191
TspRI CASTG 1 cut(s) 414
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 393
XhoI CTCGAG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.