pycom04g10570

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0012360
Physical Location & Seq
Reverse (-)
13257433 .. 13258827
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10570.4

Sequence Viewer

Length: 438 bp
ATGCTGGAGGGCTGTAATTTGAGCCTGGAGGATGTCAAAGTTGATTACAATCGGGCCTTTACGCCGATGGGAATGGTAGTGCAATTCCGGTCATGGAAGGCTTTTGATAATGCAGCTAGGGTGATTTCCAGGAAGGGCCGCCTGTTTAAATTGGAGAGGGCTAACCGATCGCTGTGGGACAATCTTACTCCCCATGATGGAAAAACTGTTTTATTGCAAGGAATTCCTCAAACTGCGGCTCCAGAAGATGTAGAACGGTTTTTATCTGGTTGTGAATATGATTCATCTTCCCTCCAGATAATTTTCAGGTCTTTCCCAGAACCCTCTAAATTTGCGACTGTTCGCTTTCCGTCTCAAACCGAGGCAATGAATGCATTCCTTGCGAAGAACAAAGGCTTCTGTCAGAATGGTCAAATTTTGATGCGCGTTCTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.49

Weight (kDa)

9.15

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 426
AciI CCGC 2 cut(s) 139, 236
AcsI RAATTY 3 cut(s) 222, 329, 414
AfiI CCNNNNNNNGG 1 cut(s) 197
AjnI CCWGG 2 cut(s) 24, 128
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 357
AoxI GGCC 2 cut(s) 54, 136
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 3 cut(s) 222, 329, 414
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 54, 136
AsuHPI GGTGA 1 cut(s) 133
BbvI GCAGC 1 cut(s) 125
BccI CCATC 2 cut(s) 61, 191
BciT130I CCWGG 2 cut(s) 26, 130
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 1 cut(s) 117
BisI GCNGC 3 cut(s) 114, 139, 237
BlsI GCNGC 3 cut(s) 115, 140, 238
Bme1390I CCNGG 2 cut(s) 26, 130
BmgT120I GGNCC 2 cut(s) 54, 136
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 26, 130
BmsI GCATC 1 cut(s) 411
BpmI CTGGAG 4 cut(s) 26, 47, 225, 278
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 48
BseBI CCWGG 2 cut(s) 26, 130
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 372
BseXI GCAGC 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 56, 138
BsiEI CGRYCG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 2 cut(s) 374, 376
BsnI GGCC 2 cut(s) 56, 138
Bsp143I GATC 1 cut(s) 167
BspACI CCGC 2 cut(s) 139, 236
BspANI GGCC 2 cut(s) 56, 138
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 26, 130
Bst4CI ACNGT 3 cut(s) 208, 258, 340
BstAPI GCANNNNNTGC 2 cut(s) 371, 380
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 426
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 1 cut(s) 167
BstMCI CGRYCG 1 cut(s) 170
BstMWI GCNNNNNNNGC 2 cut(s) 371, 380
BstNI CCWGG 2 cut(s) 26, 130
BstSCI CCNGG 2 cut(s) 24, 128
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 56, 138
BtsCI GGATG 1 cut(s) 37
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 2 cut(s) 54, 136
CviAII CATG 2 cut(s) 93, 194
CviJI RGCY 9 cut(s) 12, 24, 56, 101, 116, 138, 161, 239, 396
CviKI_1 RGCY 9 cut(s) 12, 24, 56, 101, 116, 138, 161, 239, 396
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
DraI TTTAAA 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 24, 128
EcoT22I ATGCAT 1 cut(s) 376
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 2 cut(s) 96, 197
FaiI YATR 3 cut(s) 94, 195, 279
FaqI GGGAC 1 cut(s) 191
FatI CATG 2 cut(s) 92, 193
Fnu4HI GCNGC 3 cut(s) 114, 139, 237
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 114, 139, 237
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 425
GluI GCNGC 3 cut(s) 114, 139, 237
GsuI CTGGAG 4 cut(s) 26, 47, 225, 278
HaeIII GGCC 2 cut(s) 56, 138
HapII CCGG 1 cut(s) 88
HhaI GCGC 1 cut(s) 426
Hin1II CATG 2 cut(s) 96, 197
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HinfI GANTC 1 cut(s) 281
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 2 cut(s) 242, 295
HpyAV CCTTC 2 cut(s) 91, 127
HpyCH4III ACNGT 3 cut(s) 208, 258, 340
HpyCH4V TGCA 4 cut(s) 82, 113, 217, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 380
Hsp92II CATG 2 cut(s) 96, 197
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 117
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 3 cut(s) 257, 279, 397
MluCI AATT 7 cut(s) 16, 83, 149, 222, 300, 329, 414
MnlI CCTC 6 cut(s) 22, 150, 237, 302, 334, 355
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 2 cut(s) 147, 436
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 26, 130
Mva1269I GAATGC 2 cut(s) 374, 376
MvaI CCWGG 2 cut(s) 26, 130
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 371, 380
NdeII GATC 1 cut(s) 167
NlaIII CATG 2 cut(s) 96, 197
NlaIV GGNNCC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 376
PctI GAATGC 2 cut(s) 374, 376
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 3 cut(s) 115, 140, 238
Ple19I CGATCG 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 24, 128
PspGI CCWGG 2 cut(s) 24, 128
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 54, 136
PvuI CGATCG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 147, 436
SatI GCNGC 3 cut(s) 114, 139, 237
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 2 cut(s) 54, 136
ScrFI CCNGG 2 cut(s) 26, 130
SetI ASST 2 cut(s) 118, 311
SfaNI GCATC 1 cut(s) 411
Sse9I AATT 7 cut(s) 16, 83, 149, 222, 300, 329, 414
SsiI CCGC 2 cut(s) 139, 236
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 24, 128
TaaI ACNGT 3 cut(s) 208, 258, 340
TasI AATT 7 cut(s) 16, 83, 149, 222, 300, 329, 414
TauI GCSGC 2 cut(s) 141, 239
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 2 cut(s) 147, 436
Tru9I TTAA 2 cut(s) 147, 436
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 273, 383
TspGWI ACGGA 1 cut(s) 339
XapI RAATTY 3 cut(s) 222, 329, 414
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.