FvH4_6g14830

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012360
Physical Location & Seq
Forward (+)
9201462 .. 9203556
2095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14830.t1

Sequence Viewer

Length: 717 bp
ATGTCAAAGCTGGGTCTTCTCCGAACCTCAATCAGATCAACCCTCGCCGCCCGTACATCCCTGTCACAAACCCACCGCCTCCTCGCTTCCCTCCTCCGCGACCCGCCGCGACGCTTCTCCACCGCAGCGGAGCAACCGCCGCAGAACTCGGCACCCGGACAACCACCGTCTCTAGATGCAACAGTCGACCAAATTGTTCGAAACCCAAACACAGGTGCAGCGGTGTATGGGAAATTGGTTGGGATTACGAGGAATACGTTGAGGACTGACGTTGTCAACTTGCTGGAAGGCTGTAATTTGACTCTGGAAGATGTTAAAGTCCACTACAATGGGCCTTTCATTCCCACTGGAATGCTGGTGCAATTTCCTTCACAAAGAGAATTTGAGAATGCGGTTAGAGTGCTTAGAGGCCGGGGCCTGGCCCAGGTGTTCAGATTGCAAAGGTTGGATCGACACTTGTGGGATGATATACCTCATTATGATGGAAAAACTGTGTTAATAGAGGGGATCCCTCGAACTGCGCTTCAGGAAGATGTGGAGCGCTTTCTGTCTGGGACTCCATATGAGGGCTCCTCCATTAAAATCTTTATGAAACAAGGTTCCATCAGAATGGCAACTGTTCAATTTCCTTCGCAAATCCAGGCGAAGAATGCATACATCACAAAGAACAAGGGCTTCATTCTAAACGATCAAGTCTTGATGCGTGTTCTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.6

Weight (kDa)

10.1

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AccI GTMKAC 1 cut(s) 186
AccII CGCG 2 cut(s) 99, 109
AclWI GGATC 3 cut(s) 456, 502, 515
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 509
AfaI GTAC 1 cut(s) 55
AfeI AGCGCT 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 212, 418, 424, 566
AgsI TTSAA 1 cut(s) 623
AjnI CCWGG 3 cut(s) 417, 423, 639
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 3 cut(s) 456, 502, 515
Aor51HI AGCGCT 1 cut(s) 542
AoxI GGCC 4 cut(s) 332, 409, 415, 420
ApeKI GCWGC 2 cut(s) 125, 218
ApoI RAATTY 1 cut(s) 380
AspLEI GCGC 2 cut(s) 523, 543
AspS9I GGNCC 3 cut(s) 332, 415, 421
AsuC2I CCSGG 2 cut(s) 156, 413
AsuII TTCGAA 1 cut(s) 199
BamHI GGATCC 1 cut(s) 507
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 638, 670
BbsI GAAGAC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 137, 230
BccI CCATC 2 cut(s) 476, 611
BciT130I CCWGG 3 cut(s) 419, 425, 641
BcnI CCSGG 2 cut(s) 156, 413
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 1 cut(s) 173
BfoI RGCGCY 1 cut(s) 544
BisI GCNGC 5 cut(s) 48, 107, 126, 140, 219
BlsI GCNGC 5 cut(s) 49, 108, 127, 141, 220
Bme1390I CCNGG 5 cut(s) 156, 413, 419, 425, 641
BmgT120I GGNCC 3 cut(s) 332, 415, 421
BmiI GGNNCC 5 cut(s) 153, 416, 509, 571, 601
BmrFI CCNGG 5 cut(s) 156, 413, 419, 425, 641
BmsI GCATC 2 cut(s) 166, 690
BpiI GAAGAC 1 cut(s) 8
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 695
Bpu14I TTCGAA 1 cut(s) 199
BpuMI CCSGG 2 cut(s) 156, 413
BsaJI CCNNGG 2 cut(s) 412, 423
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 418, 424, 566
Bse1I ACTGG 2 cut(s) 352, 712
BseBI CCWGG 3 cut(s) 419, 425, 641
BseDI CCNNGG 2 cut(s) 412, 423
BseGI GGATG 2 cut(s) 56, 469
BseLI CCNNNNNNNGG 4 cut(s) 212, 418, 424, 566
BseNI ACTGG 2 cut(s) 352, 712
BseRI GAGGAG 3 cut(s) 71, 83, 562
BseXI GCAGC 2 cut(s) 137, 230
BseYI CCCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 2 cut(s) 99, 109
BshFI GGCC 4 cut(s) 334, 411, 417, 422
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 156, 412
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 4 cut(s) 212, 418, 424, 566
BsmAI GTCTC 1 cut(s) 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 568
BsmI GAATGC 3 cut(s) 357, 394, 655
BsnI GGCC 4 cut(s) 334, 411, 417, 422
Bsp119I TTCGAA 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 4 cut(s) 35, 448, 507, 688
BspANI GGCC 4 cut(s) 334, 411, 417, 422
BspFNI CGCG 2 cut(s) 99, 109
BspLI GGNNCC 5 cut(s) 153, 416, 509, 571, 601
BspPI GGATC 3 cut(s) 456, 502, 515
BspT104I TTCGAA 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 151
BsrI ACTGG 2 cut(s) 352, 712
BssECI CCNNGG 2 cut(s) 412, 423
BssMI GATC 4 cut(s) 35, 448, 507, 688
Bst2UI CCWGG 3 cut(s) 419, 425, 641
Bst4CI ACNGT 4 cut(s) 168, 184, 493, 619
BstBI TTCGAA 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 404
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 2 cut(s) 56, 469
BstFNI CGCG 2 cut(s) 99, 109
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 2 cut(s) 523, 543
BstKTI GATC 4 cut(s) 38, 451, 510, 691
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 4 cut(s) 35, 448, 507, 688
BstMWI GCNNNNNNNGC 2 cut(s) 139, 650
BstNI CCWGG 3 cut(s) 419, 425, 641
BstSCI CCNGG 5 cut(s) 154, 411, 417, 423, 639
BstUI CGCG 2 cut(s) 99, 109
BstV1I GCAGC 2 cut(s) 137, 230
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 507
BstXI CCANNNNNNTGG 2 cut(s) 329, 610
BstYI RGATCY 1 cut(s) 507
BsuRI GGCC 4 cut(s) 334, 411, 417, 422
BtsCI GGATG 2 cut(s) 56, 469
BtsIMutI CAGTG 1 cut(s) 345
CfoI GCGC 2 cut(s) 523, 543
Cfr13I GGNCC 3 cut(s) 332, 415, 421
CseI GACGC 1 cut(s) 120
Csp6I GTAC 1 cut(s) 54
CviJI RGCY 8 cut(s) 10, 291, 334, 411, 417, 422, 570, 675
CviKI_1 RGCY 8 cut(s) 10, 291, 334, 411, 417, 422, 570, 675
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 404
DpnI GATC 4 cut(s) 37, 450, 509, 690
DpnII GATC 4 cut(s) 35, 448, 507, 688
Eco24I GRGCYC 1 cut(s) 572
Eco47III AGCGCT 1 cut(s) 542
Eco57I CTGAAG 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 3 cut(s) 417, 423, 639
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 174
FaiI YATR 7 cut(s) 228, 470, 480, 562, 564, 590, 655
FaqI GGGAC 1 cut(s) 568
FauI CCCGC 1 cut(s) 111
FauNDI CATATG 1 cut(s) 562
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 48, 107, 126, 140, 219
FokI GGATG 2 cut(s) 43, 476
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 5 cut(s) 48, 107, 126, 140, 219
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 522, 542
GluI GCNGC 5 cut(s) 48, 107, 126, 140, 219
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 695
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 4 cut(s) 334, 411, 417, 422
HapII CCGG 2 cut(s) 156, 412
HgaI GACGC 1 cut(s) 120
HhaI GCGC 2 cut(s) 523, 543
Hin6I GCGC 2 cut(s) 521, 541
HinP1I GCGC 2 cut(s) 521, 541
HincII GTYRAC 2 cut(s) 187, 277
HindII GTYRAC 2 cut(s) 187, 277
HinfI GANTC 2 cut(s) 301, 556
HpaII CCGG 2 cut(s) 156, 412
Hpy166II GTNNAC 3 cut(s) 187, 277, 322
Hpy188I TCNGA 4 cut(s) 23, 35, 434, 608
Hpy188III TCNNGA 4 cut(s) 173, 305, 527, 697
Hpy8I GTNNAC 3 cut(s) 187, 277, 322
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 3 cut(s) 281, 378, 639
HpyCH4III ACNGT 4 cut(s) 168, 184, 493, 619
HpyCH4IV ACGT 2 cut(s) 257, 270
HpyCH4V TGCA 5 cut(s) 179, 218, 361, 439, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 650
HpyF3I CTNAG 1 cut(s) 404
HpySE526I ACGT 2 cut(s) 257, 270
HspAI GCGC 2 cut(s) 521, 541
Kzo9I GATC 4 cut(s) 35, 448, 507, 688
LmnI GCTCC 3 cut(s) 130, 538, 575
Lsp1109I GCAGC 2 cut(s) 137, 230
LweI GCATC 2 cut(s) 166, 690
MaeI CTAG 1 cut(s) 173
MaeII ACGT 2 cut(s) 257, 270
MaeIII GTNAC 1 cut(s) 63
MalI GATC 4 cut(s) 37, 450, 509, 690
MboI GATC 4 cut(s) 35, 448, 507, 688
MboII GAAGA 4 cut(s) 8, 320, 542, 658
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 6 cut(s) 192, 233, 295, 362, 380, 623
MlyI GAGTC 2 cut(s) 295, 550
MmeI TCCRAC 1 cut(s) 426
Mph1103I ATGCAT 1 cut(s) 655
MseI TTAA 3 cut(s) 315, 497, 579
MslI CAYNNNNRTG 4 cut(s) 327, 350, 480, 608
MspA1I CMGCKG 2 cut(s) 128, 221
MspI CCGG 2 cut(s) 156, 412
MspR9I CCNGG 5 cut(s) 156, 413, 419, 425, 641
Mva1269I GAATGC 3 cut(s) 357, 394, 655
MvaI CCWGG 3 cut(s) 419, 425, 641
MvnI CGCG 2 cut(s) 99, 109
MwoI GCNNNNNNNGC 2 cut(s) 139, 650
NciI CCSGG 2 cut(s) 156, 413
NdeI CATATG 1 cut(s) 562
NdeII GATC 4 cut(s) 35, 448, 507, 688
NlaIV GGNNCC 5 cut(s) 153, 416, 509, 571, 601
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 655
NspV TTCGAA 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PctI GAATGC 3 cut(s) 357, 394, 655
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 5 cut(s) 49, 108, 127, 141, 220
PleI GAGTC 2 cut(s) 295, 550
PpsI GAGTC 2 cut(s) 295, 550
Psp6I CCWGG 3 cut(s) 417, 423, 639
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 3 cut(s) 417, 423, 639
PspN4I GGNNCC 5 cut(s) 153, 416, 509, 571, 601
PspPI GGNCC 3 cut(s) 332, 415, 421
PsuI RGATCY 1 cut(s) 507
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 4 cut(s) 327, 350, 480, 608
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 315, 497, 579
SatI GCNGC 5 cut(s) 48, 107, 126, 140, 219
Sau3AI GATC 4 cut(s) 35, 448, 507, 688
Sau96I GGNCC 3 cut(s) 332, 415, 421
SchI GAGTC 2 cut(s) 295, 550
ScrFI CCNGG 5 cut(s) 156, 413, 419, 425, 641
SduI GDGCHC 1 cut(s) 572
SetI ASST 9 cut(s) 12, 29, 217, 260, 273, 429, 446, 475, 601
SfaNI GCATC 2 cut(s) 166, 690
SfuI TTCGAA 1 cut(s) 199
SmiMI CAYNNNNRTG 4 cut(s) 327, 350, 480, 608
Sse9I AATT 6 cut(s) 192, 233, 295, 362, 380, 623
SspMI CTAG 1 cut(s) 173
StyD4I CCNGG 5 cut(s) 154, 411, 417, 423, 639
TaaI ACNGT 4 cut(s) 168, 184, 493, 619
TaiI ACGT 2 cut(s) 260, 273
TaqI TCGA 4 cut(s) 186, 199, 451, 514
TasI AATT 6 cut(s) 192, 233, 295, 362, 380, 623
TauI GCSGC 3 cut(s) 50, 109, 142
Tru1I TTAA 3 cut(s) 315, 497, 579
Tru9I TTAA 3 cut(s) 315, 497, 579
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 2 cut(s) 125, 218
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 3 cut(s) 328, 605, 667
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 272
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 1 cut(s) 380
XbaI TCTAGA 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.