Rroxscaffold_6G00413110

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012360
Physical Location & Seq
Reverse (-)
35509712 .. 35519970
10259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413110.1

Sequence Viewer

Length: 711 bp
ATGTCAAAGCTGGGACTTCTCCGAACCTCAATCAGGTCAACCCTCGCCGCCCGTTCACAAAACCACCGCCTCCTCCCTTCCCTCCTCCGCGAGCCGGCGAGACGCTTCTCGACGGAAGCGGGGCAACCGCCTCAGGACTCGGCACCCGTACAACCACCGCCGTCTCTGGATGCAACAGTCGACCAATTTGTTCAAAACCCAAGCGGAGGTGTGGTGTATGGGAAATTGCTTGGGATTACAAGGAATACATTGAAGACCGACATTGTGAACTTGCTGGAAGGCTGTAATTTGAGGCTGGAAGATGTTAAAGTTCAGTACAATGGGCCTTTCGTGCCGTCGGGAATGATGGTGCAATTTCCTTCGCAAAGAGCTTATGAGACTGCATTTAGGGCGATTAGCCGATTGGGCCAGGTGTTCAGATTGGAAAGGTCCGATCGACAGAGGTGGGATGCCGTAACTCATTATGATGGAAAAACTGTTTTAATAGAGGGAATCCCTAGAATTGCAAATACGGAAGACGTGGAGCGCTTTCTGTCTGGGACTCCATATGTGTCCTCCTCCGTTCAACTCTTTATGAAATCAGCTTTCCCGGAACCCATTAGAATGGCCACTGTTCGCTTTCCCTCGCAAATCCAGGCAATGAATGCATACCTCACAAAGAACAAAGGCTTCATTCAAAATAATCAAGTCTTGATGCGTGTGCTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

10.1

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 90
AciI CCGC 7 cut(s) 48, 67, 88, 119, 128, 158, 204
AcoI YGGCCR 1 cut(s) 606
AfaI GTAC 2 cut(s) 150, 317
AfeI AGCGCT 1 cut(s) 527
AfiI CCNNNNNNNGG 3 cut(s) 33, 94, 206
AgsI TTSAA 4 cut(s) 194, 253, 566, 677
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 2 cut(s) 408, 633
AluBI AGCT 3 cut(s) 10, 371, 584
AluI AGCT 3 cut(s) 10, 371, 584
Alw21I GWGCWC 1 cut(s) 705
Alw26I GTCTC 3 cut(s) 94, 168, 371
Aor51HI AGCGCT 1 cut(s) 527
AoxI GGCC 3 cut(s) 323, 406, 606
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 3 cut(s) 323, 406, 429
AsuC2I CCSGG 1 cut(s) 590
AvaII GGWCC 1 cut(s) 429
AxyI CCTNAGG 1 cut(s) 132
BalI TGGCCA 1 cut(s) 608
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 2 cut(s) 260, 522
Bbv12I GWGCWC 1 cut(s) 705
BccI CCATC 2 cut(s) 340, 461
BceAI ACGGC 3 cut(s) 145, 319, 437
BciT130I CCWGG 2 cut(s) 410, 635
BcnI CCSGG 1 cut(s) 590
BcoDI GTCTC 3 cut(s) 94, 168, 371
BfaI CTAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 529
BglI GCCNNNNNGGC 1 cut(s) 405
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 410, 590, 635
Bme18I GGWCC 1 cut(s) 429
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 3 cut(s) 323, 406, 429
BmiI GGNNCC 2 cut(s) 144, 594
BmrFI CCNGG 3 cut(s) 410, 590, 635
BmsI GCATC 3 cut(s) 160, 439, 684
BpiI GAAGAC 2 cut(s) 260, 522
BpmI CTGGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 590
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 94, 206
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 706
Bse21I CCTNAGG 1 cut(s) 132
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 2 cut(s) 410, 635
BseGI GGATG 2 cut(s) 175, 454
BseLI CCNNNNNNNGG 3 cut(s) 33, 94, 206
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 706
BseRI GAGGAG 3 cut(s) 62, 74, 547
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 436
BshFI GGCC 3 cut(s) 325, 408, 608
BshNI GGYRCC 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 705
BsiSI CCGG 2 cut(s) 95, 590
BslFI GGGAC 2 cut(s) 27, 553
BslI CCNNNNNNNGG 3 cut(s) 33, 94, 206
BsmAI GTCTC 3 cut(s) 94, 168, 371
BsmBI CGTCTC 2 cut(s) 94, 168
BsmFI GGGAC 2 cut(s) 27, 553
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 3 cut(s) 325, 408, 608
Bsp1286I GDGCHC 1 cut(s) 705
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 7 cut(s) 48, 67, 88, 119, 128, 158, 204
BspANI GGCC 3 cut(s) 325, 408, 608
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 2 cut(s) 144, 594
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 706
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 433
Bst2UI CCWGG 2 cut(s) 410, 635
Bst4CI ACNGT 3 cut(s) 178, 478, 613
BstAPI GCANNNNNTGC 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 92, 96
BstDEI CTNAG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 175, 454
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 1 cut(s) 528
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 3 cut(s) 94, 168, 371
BstMBI GATC 1 cut(s) 433
BstMCI CGRYCG 1 cut(s) 436
BstMWI GCNNNNNNNGC 4 cut(s) 331, 389, 405, 644
BstNI CCWGG 2 cut(s) 410, 635
BstSCI CCNGG 3 cut(s) 408, 588, 633
BstUI CGCG 1 cut(s) 90
BstV2I GAAGAC 2 cut(s) 260, 522
BstXI CCANNNNNNTGG 1 cut(s) 604
Bsu36I CCTNAGG 1 cut(s) 132
BsuRI GGCC 3 cut(s) 325, 408, 608
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 175, 454
BtsIMutI CAGTG 1 cut(s) 609
Cac8I GCNNGC 2 cut(s) 92, 96
CfoI GCGC 1 cut(s) 528
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 323, 406, 429
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 149, 316
CviQI GTAC 2 cut(s) 149, 316
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 429
Eco47III AGCGCT 1 cut(s) 527
Eco81I CCTNAGG 1 cut(s) 132
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoRII CCWGG 2 cut(s) 408, 633
EcoT22I ATGCAT 1 cut(s) 649
Esp3I CGTCTC 2 cut(s) 94, 168
FaiI YATR 7 cut(s) 219, 375, 465, 547, 549, 575, 649
FaqI GGGAC 2 cut(s) 27, 553
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 547
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 2 cut(s) 182, 461
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 498
GlaI GCGC 1 cut(s) 527
GluI GCNGC 1 cut(s) 48
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 1 cut(s) 689
HaeII RGCGCY 1 cut(s) 529
HaeIII GGCC 3 cut(s) 325, 408, 608
HapII CCGG 2 cut(s) 95, 590
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 528
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 2 cut(s) 39, 181
HindII GTYRAC 2 cut(s) 39, 181
HinfI GANTC 3 cut(s) 137, 492, 541
HpaII CCGG 2 cut(s) 95, 590
Hpy166II GTNNAC 4 cut(s) 39, 56, 181, 268
Hpy188I TCNGA 3 cut(s) 23, 419, 433
Hpy188III TCNNGA 5 cut(s) 109, 134, 167, 339, 691
Hpy8I GTNNAC 4 cut(s) 39, 56, 181, 268
Hpy99I CGWCG 2 cut(s) 115, 340
HpyAV CCTTC 3 cut(s) 87, 272, 369
HpyCH4III ACNGT 3 cut(s) 178, 478, 613
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 5 cut(s) 173, 352, 383, 506, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 331, 389, 405, 644
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 1 cut(s) 519
HspAI GCGC 1 cut(s) 526
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 2 cut(s) 523, 708
LweI GCATC 3 cut(s) 160, 439, 684
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 454
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 3 cut(s) 265, 311, 527
MhlI GDGCHC 1 cut(s) 705
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 5 cut(s) 185, 224, 286, 353, 501
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 2 cut(s) 131, 535
Mox20I TGGCCA 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 649
MroNI GCCGGC 1 cut(s) 94
MscI TGGCCA 1 cut(s) 608
MseI TTAA 2 cut(s) 306, 482
MslI CAYNNNNRTG 2 cut(s) 465, 602
Msp20I TGGCCA 1 cut(s) 608
MspI CCGG 2 cut(s) 95, 590
MspR9I CCNGG 3 cut(s) 410, 590, 635
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 2 cut(s) 410, 635
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 4 cut(s) 331, 389, 405, 644
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 590
NdeI CATATG 1 cut(s) 547
NdeII GATC 1 cut(s) 433
NgoMIV GCCGGC 1 cut(s) 94
NlaIV GGNNCC 2 cut(s) 144, 594
NmeAIII GCCGAG 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 649
PctI GAATGC 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 1 cut(s) 49
Ple19I CGATCG 1 cut(s) 436
PleI GAGTC 2 cut(s) 131, 535
PpsI GAGTC 2 cut(s) 131, 535
Psp6I CCWGG 2 cut(s) 408, 633
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 2 cut(s) 408, 633
PspN4I GGNNCC 2 cut(s) 144, 594
PspPI GGNCC 3 cut(s) 323, 406, 429
PvuI CGATCG 1 cut(s) 436
RsaI GTAC 2 cut(s) 150, 317
RsaNI GTAC 2 cut(s) 149, 316
RseI CAYNNNNRTG 2 cut(s) 465, 602
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 306, 482
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 3 cut(s) 323, 406, 429
SchI GAGTC 2 cut(s) 131, 535
ScrFI CCNGG 3 cut(s) 410, 590, 635
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 3 cut(s) 160, 439, 684
SinI GGWCC 1 cut(s) 429
SmiMI CAYNNNNRTG 2 cut(s) 465, 602
Sse9I AATT 5 cut(s) 185, 224, 286, 353, 501
SsiI CCGC 7 cut(s) 48, 67, 88, 119, 128, 158, 204
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 3 cut(s) 408, 588, 633
TaaI ACNGT 3 cut(s) 178, 478, 613
TaiI ACGT 1 cut(s) 522
TaqI TCGA 3 cut(s) 110, 180, 436
TaqII GACCGA 1 cut(s) 272
TasI AATT 5 cut(s) 185, 224, 286, 353, 501
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 2 cut(s) 306, 482
Tru9I TTAA 2 cut(s) 306, 482
TscAI CASTG 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 590, 656, 661
TspGWI ACGGA 3 cut(s) 128, 527, 550
TspRI CASTG 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 429
XagI CCTNNNNNAGG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.