Rorug03G0092000

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012360
Physical Location & Seq
Forward (+)
7169828 .. 7170996
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0092000.1

Sequence Viewer

Length: 657 bp
ATGGCGATGACAATGGCATTGGCAACAGCAACCGGAACAGTGGATGCTGGGAGTAGATGGAGCATGGCGTCGCTGAGGTCAGCACTTCCATCACCGTCTACGGTTGCTGCTTCTTCTTCGTCTTCAACACATTGTGGGCATCGAGGTCTGCGCCTGAGCCTCAGCCTCAGTCAGTCTGTCCCTAAACCCCAGAAGTATTTTGGGTCCTTCACGGGTCTCTCTCCCTTCAACCCTCTCGGCCTCTCAGACAACACGAGTTTTGAACATAACTTTACCATTATTGATAATGGTGGCCGGGTTTATGCAATGAGACATGGAAGGAAAGTGCCTAAGCTCAACAGGCCTCCCGACCAAAGGAAGGCGCTTCTCCGAGGCCTCACTACTCAGCTCCTTAAGCATGGTCGCATCAAAACCACTCGAGCAAGGGCAAGCGCGATGAGGAAGTATGTTGACAAAATGATCACATTGGCCAAAGAAGGGTCTCTTCATAAGAGGAGGCAGGCTCTTGGATTCATTTATGAGAAGCAAATTGTCCATGCCTTGTTTGCCGAGGTACCAGAGAGATATGGGGAAAGAAATGGTGGTTATACTAGAATTATCAGAACACTTCCGAGGCGAGGGGACAATGCACCCATGGCATATATTGAACTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.09

Weight (kDa)

10.97

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 122 - 218 3.5e-38 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 553
AccI GTMKAC 1 cut(s) 98
AccII CGCG 1 cut(s) 434
AcoI YGGCCR 2 cut(s) 292, 468
AcyI GRCGYC 1 cut(s) 68
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 555
AfiI CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
AflII CTTAAG 1 cut(s) 392
AgsI TTSAA 4 cut(s) 126, 229, 263, 647
AluBI AGCT 2 cut(s) 334, 388
AluI AGCT 2 cut(s) 334, 388
Alw26I GTCTC 3 cut(s) 221, 304, 486
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 5 cut(s) 238, 292, 341, 373, 468
ApeKI GCWGC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 553
AspLEI GCGC 3 cut(s) 153, 364, 434
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 84
AvaI CYCGRG 1 cut(s) 417
AvaII GGWCC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 1 cut(s) 553
BauI CACGAG 2 cut(s) 253, 650
BbsI GAAGAC 1 cut(s) 114
BbvCI CCTCAGC 2 cut(s) 74, 161
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 51, 97
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 1 cut(s) 296
BcoDI GTCTC 3 cut(s) 221, 304, 486
BfaI CTAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 365
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 2 cut(s) 205, 555
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 3 cut(s) 34, 148, 414
BpiI GAAGAC 1 cut(s) 114
BplI GAGNNNNNCTC 2 cut(s) 487, 519
Bpu10I CCTNAGC 4 cut(s) 74, 155, 161, 330
BpuMI CCSGG 1 cut(s) 296
BsaHI GRCGYC 1 cut(s) 68
BsaI GGTCTC 2 cut(s) 221, 486
BsaJI CCNNGG 4 cut(s) 370, 549, 611, 633
BsaWI WCCGGW 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
Bse3DI GCAATG 1 cut(s) 312
BseDI CCNNGG 4 cut(s) 370, 549, 611, 633
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 6 cut(s) 65, 146, 175, 181, 258, 398
BseRI GAGGAG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 5 cut(s) 240, 294, 343, 375, 470
BshNI GGYRCC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 2 cut(s) 33, 295
BslFI GGGAC 2 cut(s) 164, 635
BslI CCNNNNNNNGG 4 cut(s) 354, 358, 477, 617
BsmAI GTCTC 3 cut(s) 221, 304, 486
BsmFI GGGAC 2 cut(s) 164, 635
BsnI GGCC 5 cut(s) 240, 294, 343, 375, 470
Bso31I GGTCTC 2 cut(s) 221, 486
BsoBI CYCGRG 1 cut(s) 417
Bsp143I GATC 1 cut(s) 459
Bsp19I CCATGG 1 cut(s) 633
BspANI GGCC 5 cut(s) 240, 294, 343, 375, 470
BspCNI CTCAG 6 cut(s) 66, 147, 174, 180, 257, 397
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 2 cut(s) 205, 555
BspT107I GGYRCC 1 cut(s) 553
BspTI CTTAAG 1 cut(s) 392
BspTNI GGTCTC 2 cut(s) 221, 486
BsrDI GCAATG 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 370, 549, 611, 633
BssMI GATC 1 cut(s) 459
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 2 cut(s) 253, 650
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 2 cut(s) 253, 650
Bst4CI ACNGT 3 cut(s) 40, 96, 103
Bst6I CTCTTC 1 cut(s) 489
BstACI GRCGYC 1 cut(s) 68
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 430, 501
BstDEI CTNAG 7 cut(s) 74, 155, 161, 167, 244, 330, 384
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 3 cut(s) 153, 364, 434
BstKTI GATC 1 cut(s) 462
BstMAI GTCTC 3 cut(s) 221, 304, 486
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 4 cut(s) 340, 394, 545, 635
BstSCI CCNGG 1 cut(s) 294
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 5 cut(s) 240, 294, 343, 375, 470
BtgI CCRYGG 1 cut(s) 633
BtgZI GCGATG 2 cut(s) 20, 449
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 430, 501
CfoI GCGC 3 cut(s) 153, 364, 434
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 554
CviAII CATG 5 cut(s) 64, 314, 398, 536, 634
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 7 cut(s) 74, 155, 161, 167, 244, 330, 384
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
DraIII CACNNNGTG 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 292, 468
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 633
Eco147I AGGCCT 2 cut(s) 343, 375
Eco31I GGTCTC 2 cut(s) 221, 486
Eco47I GGWCC 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 5 cut(s) 67, 317, 401, 539, 637
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 164, 635
FatI CATG 5 cut(s) 63, 313, 397, 535, 633
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 591
GlaI GCGC 3 cut(s) 152, 363, 433
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 51
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 5 cut(s) 240, 294, 343, 375, 470
HapII CCGG 2 cut(s) 33, 295
HgaI GACGC 1 cut(s) 57
HhaI GCGC 3 cut(s) 153, 364, 434
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 5 cut(s) 67, 317, 401, 539, 637
Hin6I GCGC 3 cut(s) 151, 362, 432
HinP1I GCGC 3 cut(s) 151, 362, 432
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 1 cut(s) 510
HpaII CCGG 2 cut(s) 33, 295
HphI GGTGA 1 cut(s) 84
Hpy166II GTNNAC 2 cut(s) 99, 451
Hpy188I TCNGA 4 cut(s) 247, 371, 602, 612
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 2 cut(s) 99, 451
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 5 cut(s) 217, 235, 312, 352, 470
HpyCH4III ACNGT 3 cut(s) 40, 96, 103
HpyCH4V TGCA 2 cut(s) 305, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 340, 394, 545, 635
HpyF3I CTNAG 7 cut(s) 74, 155, 161, 167, 244, 330, 384
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 5 cut(s) 67, 317, 401, 539, 637
HspAI GCGC 3 cut(s) 151, 362, 432
KpnI GGTACC 1 cut(s) 557
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 60, 393
LpnPI CCDG 8 cut(s) 33, 46, 167, 203, 308, 325, 485, 570
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 34, 148, 414
MaeI CTAG 1 cut(s) 591
MalI GATC 1 cut(s) 461
MboI GATC 1 cut(s) 459
MboII GAAGA 4 cut(s) 105, 108, 114, 476
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 2 cut(s) 528, 594
MluNI TGGCCA 1 cut(s) 470
Mox20I TGGCCA 1 cut(s) 470
MscI TGGCCA 1 cut(s) 470
MseI TTAA 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 2 cut(s) 33, 295
MspR9I CCNGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 340, 394, 545, 635
NciI CCSGG 1 cut(s) 296
NcoI CCATGG 1 cut(s) 633
NdeII GATC 1 cut(s) 459
NlaIII CATG 5 cut(s) 67, 317, 401, 539, 637
NlaIV GGNNCC 2 cut(s) 205, 555
NmeAIII GCCGAG 2 cut(s) 216, 574
PaeR7I CTCGAG 1 cut(s) 417
PceI AGGCCT 2 cut(s) 343, 375
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 1 cut(s) 109
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 205, 555
PspPI GGNCC 1 cut(s) 204
PspPPI RGGWCCY 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 417
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 296
SetI ASST 5 cut(s) 80, 148, 336, 390, 555
SfaNI GCATC 3 cut(s) 34, 148, 414
Sfr274I CTCGAG 1 cut(s) 417
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 417
SmlI CTYRAG 2 cut(s) 392, 417
SmoI CTYRAG 2 cut(s) 392, 417
Sse9I AATT 2 cut(s) 528, 594
SseBI AGGCCT 2 cut(s) 343, 375
SspMI CTAG 1 cut(s) 591
StuI AGGCCT 2 cut(s) 343, 375
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 3 cut(s) 40, 96, 103
TaqI TCGA 2 cut(s) 142, 418
TasI AATT 2 cut(s) 528, 594
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 476, 502
TspRI CASTG 1 cut(s) 45
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 417
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.