Prupe.6G245500_v2.0.a1

Ribosomal protein S24e family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012360
Physical Location & Seq
Reverse (-)
24262652 .. 24264780
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G245500.1

Sequence Viewer

Length: 765 bp
ATGTCAAAGCTGGGTCTTCTTCGAGCCTCAATCATGTCAAGCCTCTCCGTCCGTACGGCCATGGCGCAAAACCGCTGCCTCACTTCGCTTCTGCGCGAACCGGCGAGACGGTTTTCGACGGAAGCCAAAAACCCGCTTCAGGACTCTTCAACGTCCGATCAGCCGCTGGAGTCTTCTCCGTCCGATAAGCCTCAGAAGTCTTCGCCATCCAATAAGCCTCAGGAGTCTTCGCCGTCCGAATCATTTTTCGAAACCCCAAGCACAGGATCGGTGTATGGGAGGCTGCTTGGAGTCAAAAGGAATACGCTGAAGACAGACGTCGTGAATTTGCTGGAAGGCTGTAATTTGAGTCTGGATGATGTTAAAATGGATTATAATCGGTGGTTTACGGCGATAGGAATGTTAGTGCAATTCCCGTCGCGGCAAGCCTATGATAATGCAATTAGGATGATTGCCAAAAAGGGCCGCCTGTTTAAATTGGAGAGGGCTAATCGAGCGGAATGGGACTCTCTTACTCCCTATGATGGAAAAACGGTTTTATTGCAAGGAATCCCTCCTAATGCGGTTCCAGAAGATGTAGATCGTTTTCTGTCTGGTTGTGAATATGATTCGTCTTCCCTCCAATTAAGTTTCAGACCTTCCCAAGAGCCCGCTAAATGGGCAACTGTTCGCTTTCATACTCAAACTGAGGCAATGAATGCATTCCTTGTGAAGAACAAAGGCTTCTGCCTGAATGGTGAAGTTTTGATGCGTGTTCTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.39

Weight (kDa)

9.17

Isoelectric Point (pI)

60.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012360)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02740 AT5G02740
fragaria_vesca FvH4_6g14830
malus_domestica MD04G1110400.v1.1
prunus_persica Prupe.6G245500_v2.0.a1
pyrus_communis pycom04g10570 pycom13g21250
rosa_chinensis RchiOBHm_Chr3g0468061
rosa_laevigata RLG00000024455
rosa_multiflora Rmu_sc0005326.1_g000003 Rmu_sc0012651.1_g000003
rosa_roxburghii Rroxscaffold_6G00413110
rosa_rugosa Rorug03G0091900 Rorug03G0092000
rosa_samantha Rh3AG140500 Rh3BG161800 Rh3CG161800 Rh3DG162300
rosa_wichuraiana Rw3G013270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AatII GACGTC 1 cut(s) 321
AccBSI CCGCTC 1 cut(s) 497
AccII CGCG 2 cut(s) 96, 421
AciI CCGC 8 cut(s) 73, 134, 164, 421, 466, 497, 563, 651
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 2 cut(s) 122, 329
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 4 cut(s) 139, 263, 524, 657
AgsI TTSAA 1 cut(s) 150
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 1 cut(s) 274
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 2 cut(s) 57, 463
ApeKI GCWGC 2 cut(s) 75, 283
ApoI RAATTY 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 2 cut(s) 67, 96
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 1 cut(s) 749
AsuII TTCGAA 1 cut(s) 249
AxyI CCTNAGG 1 cut(s) 219
BanII GRGCYC 1 cut(s) 651
BbsI GAAGAC 6 cut(s) 8, 165, 192, 219, 317, 606
BbvI GCAGC 2 cut(s) 62, 270
BccI CCATC 2 cut(s) 214, 518
BceAI ACGGC 3 cut(s) 72, 217, 405
BcoDI GTCTC 1 cut(s) 100
BisI GCNGC 5 cut(s) 76, 164, 284, 422, 466
BlsI GCNGC 5 cut(s) 77, 165, 285, 423, 467
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 567
BmsI GCATC 1 cut(s) 738
BoxI GACNNNNGTC 1 cut(s) 317
BpiI GAAGAC 6 cut(s) 8, 165, 192, 219, 317, 606
BpmI CTGGAG 2 cut(s) 188, 743
Bpu14I TTCGAA 1 cut(s) 249
BsaBI GATNNNNATC 2 cut(s) 375, 579
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 263, 524, 657
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 760
Bse21I CCTNAGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 2 cut(s) 375, 579
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 206, 361, 453
BseJI GATNNNNATC 2 cut(s) 375, 579
BseLI CCNNNNNNNGG 4 cut(s) 139, 263, 524, 657
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 3 cut(s) 206, 233, 678
BseNI ACTGG 1 cut(s) 760
BseXI GCAGC 2 cut(s) 62, 270
BseYI CCCAGC 1 cut(s) 10
Bsh1236I CGCG 2 cut(s) 96, 421
BshFI GGCC 2 cut(s) 59, 465
BsiSI CCGG 1 cut(s) 101
BsiWI CGTACG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 4 cut(s) 139, 263, 524, 657
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 518
BsmI GAATGC 2 cut(s) 701, 703
BsnI GGCC 2 cut(s) 59, 465
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 651
Bsp143I GATC 3 cut(s) 157, 266, 580
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 8 cut(s) 73, 134, 164, 421, 466, 497, 563, 651
BspANI GGCC 2 cut(s) 59, 465
BspCNI CTCAG 3 cut(s) 205, 232, 679
BspFNI CGCG 2 cut(s) 96, 421
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 249
BsrBI CCGCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 760
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 3 cut(s) 157, 266, 580
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 111, 535, 667
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 318
BstAPI GCANNNNNTGC 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 426, 651
BstDEI CTNAG 3 cut(s) 192, 219, 687
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 206, 361, 453
BstFNI CGCG 2 cut(s) 96, 421
BstHHI GCGC 2 cut(s) 67, 96
BstKTI GATC 3 cut(s) 160, 269, 583
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 157, 266, 580
BstMWI GCNNNNNNNGC 3 cut(s) 494, 659, 698
BstPAI GACNNNNGTC 1 cut(s) 317
BstUI CGCG 2 cut(s) 96, 421
BstV1I GCAGC 2 cut(s) 62, 270
BstV2I GAAGAC 6 cut(s) 8, 165, 192, 219, 317, 606
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 2 cut(s) 59, 465
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 3 cut(s) 206, 361, 453
Cac8I GCNNGC 2 cut(s) 426, 651
CaiI CAGNNNCTG 1 cut(s) 166
CfoI GCGC 2 cut(s) 67, 96
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 463
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 34, 61
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 3 cut(s) 192, 219, 687
DpnI GATC 3 cut(s) 159, 268, 582
DpnII GATC 3 cut(s) 157, 266, 580
DraI TTTAAA 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 122, 329
Eco81I CCTNAGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 2 cut(s) 37, 64
FaiI YATR 8 cut(s) 35, 62, 276, 375, 432, 522, 606, 678
FaqI GGGAC 1 cut(s) 518
FatI CATG 2 cut(s) 33, 60
FauI CCCGC 2 cut(s) 141, 658
Fnu4HI GCNGC 5 cut(s) 76, 164, 284, 422, 466
FokI GGATG 3 cut(s) 193, 368, 460
FriOI GRGCYC 1 cut(s) 651
Fsp4HI GCNGC 5 cut(s) 76, 164, 284, 422, 466
GlaI GCGC 2 cut(s) 66, 95
GluI GCNGC 5 cut(s) 76, 164, 284, 422, 466
GsaI CCCAGC 1 cut(s) 14
GsuI CTGGAG 2 cut(s) 188, 743
HaeIII GGCC 2 cut(s) 59, 465
HapII CCGG 1 cut(s) 101
HhaI GCGC 2 cut(s) 67, 96
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 2 cut(s) 37, 64
Hin6I GCGC 2 cut(s) 65, 94
HinP1I GCGC 2 cut(s) 65, 94
HinfI GANTC 9 cut(s) 143, 170, 224, 239, 291, 349, 506, 549, 608
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 5 cut(s) 157, 184, 195, 238, 635
Hpy188III TCNNGA 5 cut(s) 140, 221, 322, 353, 569
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 3 cut(s) 121, 323, 421
HpyAV CCTTC 2 cut(s) 329, 648
HpyCH4III ACNGT 3 cut(s) 111, 535, 667
HpyCH4IV ACGT 2 cut(s) 152, 318
HpyCH4V TGCA 4 cut(s) 409, 440, 544, 701
HpyF10VI GCNNNNNNNGC 3 cut(s) 494, 659, 698
HpyF3I CTNAG 3 cut(s) 192, 219, 687
HpySE526I ACGT 2 cut(s) 152, 318
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 2 cut(s) 37, 64
HspAI GCGC 2 cut(s) 65, 94
Kzo9I GATC 3 cut(s) 157, 266, 580
Lsp1109I GCAGC 2 cut(s) 62, 270
LweI GCATC 1 cut(s) 738
MaeII ACGT 2 cut(s) 152, 318
MalI GATC 3 cut(s) 159, 268, 582
MbiI CCGCTC 1 cut(s) 497
MboI GATC 3 cut(s) 157, 266, 580
MhlI GDGCHC 1 cut(s) 651
MluCI AATT 6 cut(s) 325, 343, 410, 441, 476, 623
MlyI GAGTC 6 cut(s) 137, 179, 233, 300, 358, 500
Mph1103I ATGCAT 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 3 cut(s) 363, 474, 626
MspA1I CMGCKG 2 cut(s) 75, 166
MspI CCGG 1 cut(s) 101
Mva1269I GAATGC 2 cut(s) 701, 703
MvnI CGCG 2 cut(s) 96, 421
MwoI GCNNNNNNNGC 3 cut(s) 494, 659, 698
NcoI CCATGG 1 cut(s) 60
NdeII GATC 3 cut(s) 157, 266, 580
NlaIII CATG 2 cut(s) 37, 64
NlaIV GGNNCC 1 cut(s) 567
NsiI ATGCAT 1 cut(s) 703
NspV TTCGAA 1 cut(s) 249
PctI GAATGC 2 cut(s) 701, 703
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 239, 549, 608
Pfl23II CGTACG 1 cut(s) 53
PkrI GCNGC 5 cut(s) 77, 165, 285, 423, 467
PleI GAGTC 6 cut(s) 137, 178, 232, 299, 357, 500
PpsI GAGTC 6 cut(s) 137, 178, 232, 299, 357, 500
PshAI GACNNNNGTC 1 cut(s) 317
PsiI TTATAA 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 10
PspLI CGTACG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 363, 474, 626
SatI GCNGC 5 cut(s) 76, 164, 284, 422, 466
Sau3AI GATC 3 cut(s) 157, 266, 580
Sau96I GGNCC 1 cut(s) 463
SchI GAGTC 6 cut(s) 137, 179, 233, 300, 358, 500
SduI GDGCHC 1 cut(s) 651
SetI ASST 4 cut(s) 12, 155, 321, 640
SfaNI GCATC 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 249
Sse9I AATT 6 cut(s) 325, 343, 410, 441, 476, 623
SsiI CCGC 8 cut(s) 73, 134, 164, 421, 466, 497, 563, 651
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 111, 535, 667
TaiI ACGT 2 cut(s) 155, 321
TaqI TCGA 4 cut(s) 22, 116, 249, 493
TasI AATT 6 cut(s) 325, 343, 410, 441, 476, 623
TauI GCSGC 3 cut(s) 166, 424, 468
TfiI GAWTC 3 cut(s) 239, 549, 608
Tru1I TTAA 3 cut(s) 363, 474, 626
Tru9I TTAA 3 cut(s) 363, 474, 626
TseI GCWGC 2 cut(s) 75, 283
TspDTI ATGAA 2 cut(s) 665, 710
TspGWI ACGGA 4 cut(s) 37, 41, 134, 168
XapI RAATTY 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 701
ZraI GACGTC 1 cut(s) 319
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.