AT5G02890

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014513
Physical Location & Seq
Reverse (-)
669990 .. 671687
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02890.1

Sequence Viewer

Length: 1062 bp
ATGGAAACCAAAATCCCTAAGTCAATGATCGCCGGAGTACAGACTGTCATGCCGGTGGAAGTGACGCAACACCGGGAAATCCGCTCCGTATCCGTCGTAGATCCCGTCGGAGTAGGAATATTCCGGCGAACGGTTAACATAGTTACGTATTACAAAGAAGCAGGTGATAGTGGTGGTGAGAGAGGGTGGTTAGTCGCCGGGTGGATCAAGGAATCTTTAGGGAGAGCCTTGACGGAGCAGCCGATGCTTTCCGGTAGGCTACGGAGGAGGAAGACGGCGGGGAATGATGGTTTGGAGTTAGTGGCCAATGATAGTGGTGTGAGGATGGTGGAGGCTAAGTTTCCGGCGAGTCTGCCGGAGTTTCTTGAAATGGCGAAGAGAGACAAAAGCAGAGCTGAAGCAGAGACTGTTTTCTGGAAAGACATTGATGAAGATGAACCTCAATACTCTCCATTGTTCTATGTTCAGGTGACTAATTTTGAGAGTGGTGGGTACTCAATTGGGATAAGCTGCAGCATCCTAATAGCTGATCTCTTCCTTGAGACAGGTTTCTTAACCAAATGGGCTCAAATCCAAAGCTCTTTAGCTCAAACCACACTCAAACCAGTATTCCACCTCCCTTCTCTCAAGCAAGACTTTGGTAATTTCCTCACTGAATTTTTTAGGTCAGCCTCGGTTCTCGACCGCGGCGAACCTATTGCTTTTCGGGCCAAAACATGCCTGAAAATATCACCAGCCTGCATTGTAACTAGCAAAAGAACGAGTGGGGATGTTTTCTTATTCATCAAGGAACAAAGCAGTGGCGAAAATAGTACTGGATGTGATGGTACGAAGGTAGAGATACATTCGAGTGATGAAGTGATTAAGGGTTGCGATTGCGGTCGTGATTCAGAGGAGACAAATGATGGAGTACTTGATAAGAGTTTATCGTTTGGGGAAAGACTTGAAGTTACTTCATGTTGGGTTGGGTGTGTCTCAAAAGGGGTAGTATTTGTTTTCCCATCTACTTTTGGGGATGCCAAGTCGCTAGCCAAATTTATTGTTGCACTGCCAAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

353

Amino Acids

38.8

Weight (kDa)

5.54

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 66 - 209 1.5e-19 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014513)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02890
fragaria_vesca FvH4_5g20090
malus_domestica MD04G1050800.v1.1
prunus_persica Prupe.5G059300_v2.0.a1
pyrus_communis pycom04g04470
rosa_chinensis RchiOBHm_Chr7g0204981
rosa_laevigata RLG00000003418
rosa_multiflora Rmu_sc0005112.1_g000025 Rmu_sc0024226.1_g000001
rosa_roxburghii Rroxscaffold_3G00252630
rosa_rugosa Rorug07G0086800
rosa_samantha Rh7AG217800 Rh7BG214700 Rh7CG230800 Rh7CG230900 Rh7DG225100
rosa_wichuraiana Rw7G018870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 84
AccII CGCG 1 cut(s) 687
AciI CCGC 5 cut(s) 82, 278, 685, 687, 879
AclWI GGATC 2 cut(s) 95, 212
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 2 cut(s) 656, 1034
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 5 cut(s) 39, 494, 814, 829, 912
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 368, 947
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 5 cut(s) 395, 510, 527, 579, 587
AluI AGCT 5 cut(s) 395, 510, 527, 579, 587
Alw26I GTCTC 5 cut(s) 375, 398, 536, 890, 979
AlwI GGATC 2 cut(s) 95, 212
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 2 cut(s) 303, 708
ApeKI GCWGC 3 cut(s) 238, 510, 513
ApoI RAATTY 2 cut(s) 656, 1034
AspS9I GGNCC 1 cut(s) 708
AsuC2I CCSGG 2 cut(s) 74, 199
AsuHPI GGTGA 4 cut(s) 176, 188, 481, 723
AsuNHI GCTAGC 1 cut(s) 1027
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BalI TGGCCA 1 cut(s) 305
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 250, 497, 525
BccI CCATC 5 cut(s) 281, 319, 818, 899, 1009
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciVI GTATCC 1 cut(s) 100
BcnI CCSGG 2 cut(s) 74, 199
BcoDI GTCTC 5 cut(s) 375, 398, 536, 890, 979
BfaI CTAG 2 cut(s) 750, 1028
BfmI CTRYAG 1 cut(s) 511
BfuAI ACCTGC 1 cut(s) 152
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 4 cut(s) 239, 511, 514, 688
BlsI GCNGC 4 cut(s) 240, 512, 515, 689
BmcAI AGTACT 2 cut(s) 814, 912
Bme1390I CCNGG 2 cut(s) 74, 199
BmgT120I GGNCC 1 cut(s) 708
BmrFI CCNGG 2 cut(s) 74, 199
BmsI GCATC 3 cut(s) 234, 525, 1006
BmtI GCTAGC 1 cut(s) 1031
BpiI GAAGAC 1 cut(s) 278
BpuEI CTTGAG 2 cut(s) 560, 611
BpuMI CCSGG 2 cut(s) 74, 199
BsaAI YACGTR 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 672, 685
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 605, 820
BseDI CCNNGG 2 cut(s) 672, 685
BseGI GGATG 5 cut(s) 330, 516, 775, 824, 1021
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 605, 820
BseRI GAGGAG 2 cut(s) 280, 908
BseXI GCAGC 3 cut(s) 250, 497, 525
Bsh1236I CGCG 1 cut(s) 687
Bsh1285I CGRYCG 2 cut(s) 685, 883
BshFI GGCC 2 cut(s) 305, 710
BsiEI CGRYCG 2 cut(s) 685, 883
BsiSI CCGG 8 cut(s) 33, 53, 73, 124, 198, 252, 344, 356
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 5 cut(s) 375, 398, 536, 890, 979
BsnI GGCC 2 cut(s) 305, 710
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 4 cut(s) 27, 100, 204, 529
BspACI CCGC 5 cut(s) 82, 278, 685, 687, 879
BspANI GGCC 2 cut(s) 305, 710
BspFNI CGCG 1 cut(s) 687
BspMAI CTGCAG 1 cut(s) 515
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 1031
BspPI GGATC 2 cut(s) 95, 212
BsrBI CCGCTC 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 2 cut(s) 605, 820
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 672, 685
BssMI GATC 4 cut(s) 27, 100, 204, 529
Bst4CI ACNGT 3 cut(s) 46, 133, 409
Bst6I CTCTTC 2 cut(s) 371, 539
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 739, 1029
BstDEI CTNAG 2 cut(s) 18, 336
BstDSI CCRYGG 1 cut(s) 685
BstF5I GGATG 5 cut(s) 330, 516, 775, 824, 1021
BstFNI CGCG 1 cut(s) 687
BstKTI GATC 4 cut(s) 30, 103, 207, 532
BstMAI GTCTC 5 cut(s) 375, 398, 536, 890, 979
BstMBI GATC 4 cut(s) 27, 100, 204, 529
BstMCI CGRYCG 2 cut(s) 685, 883
BstMWI GCNNNNNNNGC 2 cut(s) 244, 707
BstNSI RCATGY 1 cut(s) 720
BstSCI CCNGG 2 cut(s) 72, 197
BstSFI CTRYAG 1 cut(s) 511
BstSNI TACGTA 1 cut(s) 147
BstUI CGCG 1 cut(s) 687
BstV1I GCAGC 3 cut(s) 250, 497, 525
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 305, 710
BtgI CCRYGG 1 cut(s) 685
BtsCI GGATG 5 cut(s) 330, 516, 775, 824, 1021
BtsI GCAGTG 2 cut(s) 805, 1046
BtsIMutI CAGTG 3 cut(s) 651, 805, 1046
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 2 cut(s) 739, 1029
CaiI CAGNNNCTG 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 708
Cfr42I CCGCGG 1 cut(s) 688
CseI GACGC 1 cut(s) 73
Csp6I GTAC 5 cut(s) 38, 493, 813, 828, 911
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 3 cut(s) 49, 717, 957
CviQI GTAC 5 cut(s) 38, 493, 813, 828, 911
DdeI CTNAG 2 cut(s) 18, 336
DpnI GATC 4 cut(s) 29, 102, 206, 531
DpnII GATC 4 cut(s) 27, 100, 204, 529
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 371, 539
EarI CTCTTC 2 cut(s) 371, 539
Eco105I TACGTA 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 568
FaeI CATG 3 cut(s) 52, 720, 960
FaiI YATR 5 cut(s) 50, 140, 462, 718, 958
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 3 cut(s) 48, 716, 956
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 239, 511, 514, 688
FokI GGATG 5 cut(s) 337, 503, 782, 831, 1028
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 4 cut(s) 239, 511, 514, 688
FspBI CTAG 2 cut(s) 750, 1028
GluI GCNGC 4 cut(s) 239, 511, 514, 688
HaeIII GGCC 2 cut(s) 305, 710
HapII CCGG 8 cut(s) 33, 53, 73, 124, 198, 252, 344, 356
HgaI GACGC 1 cut(s) 73
Hin1II CATG 3 cut(s) 52, 720, 960
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 3 cut(s) 212, 349, 887
HpaI GTTAAC 1 cut(s) 136
HpaII CCGG 8 cut(s) 33, 53, 73, 124, 198, 252, 344, 356
HphI GGTGA 4 cut(s) 176, 188, 481, 723
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 110, 892
Hpy188III TCNNGA 4 cut(s) 365, 415, 680, 884
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 98, 110
HpyAV CCTTC 2 cut(s) 630, 826
HpyCH4III ACNGT 3 cut(s) 46, 133, 409
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 513, 741, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 707
HpyF3I CTNAG 2 cut(s) 18, 336
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 3 cut(s) 52, 720, 960
KspAI GTTAAC 1 cut(s) 136
KspI CCGCGG 1 cut(s) 688
Kzo9I GATC 4 cut(s) 27, 100, 204, 529
LmnI GCTCC 2 cut(s) 89, 235
Lsp1109I GCAGC 3 cut(s) 250, 497, 525
LweI GCATC 3 cut(s) 234, 525, 1006
MaeI CTAG 2 cut(s) 750, 1028
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 5 cut(s) 61, 142, 469, 745, 949
MalI GATC 4 cut(s) 29, 102, 206, 531
MbiI CCGCTC 1 cut(s) 84
MboI GATC 4 cut(s) 27, 100, 204, 529
MboII GAAGA 4 cut(s) 283, 388, 443, 526
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 5 cut(s) 475, 498, 643, 656, 1034
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 88
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 3 cut(s) 135, 554, 864
MslI CAYNNNNRTG 2 cut(s) 53, 849
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 687
MspI CCGG 8 cut(s) 33, 53, 73, 124, 198, 252, 344, 356
MspR9I CCNGG 2 cut(s) 74, 199
MunI CAATTG 1 cut(s) 498
MvnI CGCG 1 cut(s) 687
MwoI GCNNNNNNNGC 2 cut(s) 244, 707
NciI CCSGG 2 cut(s) 74, 199
NdeII GATC 4 cut(s) 27, 100, 204, 529
NheI GCTAGC 1 cut(s) 1027
NlaIII CATG 3 cut(s) 52, 720, 960
NmuCI GTSAC 2 cut(s) 61, 469
NspI RCATGY 1 cut(s) 720
PaqCI CACCTGC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 239, 687
PfeI GAWTC 2 cut(s) 212, 887
PkrI GCNGC 4 cut(s) 240, 512, 515, 689
PleI GAGTC 1 cut(s) 357
PpsI GAGTC 1 cut(s) 357
Ppu21I YACGTR 1 cut(s) 147
PspPI GGNCC 1 cut(s) 708
PstI CTGCAG 1 cut(s) 515
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 5 cut(s) 39, 494, 814, 829, 912
RsaNI GTAC 5 cut(s) 38, 493, 813, 828, 911
RseI CAYNNNNRTG 2 cut(s) 53, 849
SacII CCGCGG 1 cut(s) 688
SaqAI TTAA 3 cut(s) 135, 554, 864
SatI GCNGC 4 cut(s) 239, 511, 514, 688
Sau3AI GATC 4 cut(s) 27, 100, 204, 529
Sau96I GGNCC 1 cut(s) 708
ScaI AGTACT 2 cut(s) 814, 912
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 74, 199
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 3 cut(s) 234, 525, 1006
SfcI CTRYAG 1 cut(s) 511
Sfr303I CCGCGG 1 cut(s) 688
SgrBI CCGCGG 1 cut(s) 688
SmiMI CAYNNNNRTG 2 cut(s) 53, 849
SmlI CTYRAG 2 cut(s) 539, 626
SmoI CTYRAG 2 cut(s) 539, 626
SnaBI TACGTA 1 cut(s) 147
Sse9I AATT 5 cut(s) 475, 498, 643, 656, 1034
SsiI CCGC 5 cut(s) 82, 278, 685, 687, 879
SspI AATATT 1 cut(s) 120
SspMI CTAG 2 cut(s) 750, 1028
StyD4I CCNGG 2 cut(s) 72, 197
TaaI ACNGT 3 cut(s) 46, 133, 409
TaiI ACGT 1 cut(s) 149
TaqI TCGA 2 cut(s) 681, 848
TasI AATT 5 cut(s) 475, 498, 643, 656, 1034
TatI WGTACW 3 cut(s) 37, 812, 910
TauI GCSGC 1 cut(s) 690
TfiI GAWTC 2 cut(s) 212, 887
Tru1I TTAA 3 cut(s) 135, 554, 864
Tru9I TTAA 3 cut(s) 135, 554, 864
TscAI CASTG 3 cut(s) 658, 805, 1053
TseFI GTSAC 2 cut(s) 61, 469
TseI GCWGC 3 cut(s) 238, 510, 513
Tsp45I GTSAC 2 cut(s) 61, 469
TspDTI ATGAA 5 cut(s) 444, 450, 772, 870, 945
TspGWI ACGGA 4 cut(s) 76, 82, 248, 277
TspRI CASTG 3 cut(s) 658, 805, 1053
XapI RAATTY 2 cut(s) 656, 1034
XceI RCATGY 1 cut(s) 720
XspI CTAG 2 cut(s) 750, 1028
ZrmI AGTACT 2 cut(s) 814, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.