Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014513

Physical Location & Seq

Genomic Coordinates Forward (+)

21602920 .. 21603282

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATCTTCAATGTTGCAGCTGAGAAGGCGGACTCGGAGAACGATGATGCATTGCAACTTTGTGTTGAAGAAGCAGAGAGCAAGTTTGGTTTTGGGAAATTGTTTGTGAAGATCAACATCTCATCCTGCAGTGCAATCAAGGTTGAGAATTTTCAAAAAGAAGGACTTGCTAAGCCGAAACTGAGCCTAATTGCTGACGCGGATTGGGATTATTTCGGGGCAAAGGAGGTCGAGTTTCGTGAAGGGAATAAGCCGGCTACTGTTTCGTATTGGTTTGGATTAATTTCTGGTGGACTTGTTATGGCAGTGCCATCATCAGCTGATCAGGAGGGTGCTTCAGTGATTGTCACAGTTCCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

120

Amino Acids

12.94

Weight (kDa)

4.51

Isoelectric Point (pI)

26.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02890
fragaria_vesca	FvH4_5g20090
malus_domestica	MD04G1050800.v1.1
prunus_persica	Prupe.5G059300_v2.0.a1
pyrus_communis	pycom04g04470
rosa_chinensis	RchiOBHm_Chr7g0204981
rosa_laevigata	RLG00000003418
rosa_multiflora	Rmu_sc0005112.1_g000025 Rmu_sc0024226.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252630
rosa_rugosa	Rorug07G0086800
rosa_samantha	Rh7AG217800 Rh7BG214700 Rh7CG230800 Rh7CG230900 Rh7DG225100
rosa_wichuraiana	Rw7G018870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	29, 200
AcsI	RAATTY	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	10, 68, 155
AluBI	AGCT	2 cut(s)	20, 320
AluI	AGCT	2 cut(s)	20, 320
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	322
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bse118I	RCCGGY	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	116
BseGI	GGATG	1 cut(s)	122
BseJI	GATNNNNATC	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	12, 173
BseXI	GCAGC	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	254
Bsp143I	GATC	3 cut(s)	3, 111, 322
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	2 cut(s)	29, 200
BspCNI	CTCAG	2 cut(s)	13, 174
BspFNI	CGCG	1 cut(s)	200
BspMAI	CTGCAG	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	253
BssAI	RCCGGY	1 cut(s)	253
BssMI	GATC	3 cut(s)	3, 111, 322
Bst4CI	ACNGT	2 cut(s)	262, 352
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	21, 171, 182
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	3 cut(s)	6, 114, 325
BstMBI	GATC	3 cut(s)	3, 111, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	127
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	2 cut(s)	136, 312
BtsIMutI	CAGTG	3 cut(s)	136, 312, 345
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	253
CseI	GACGC	1 cut(s)	206
CviJI	RGCY	6 cut(s)	20, 175, 186, 253, 257, 320
CviKI_1	RGCY	6 cut(s)	20, 175, 186, 253, 257, 320
DdeI	CTNAG	3 cut(s)	21, 171, 182
DpnI	GATC	3 cut(s)	5, 113, 324
DpnII	GATC	3 cut(s)	3, 111, 322
EciI	GGCGGA	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	52
FaiI	YATR	1 cut(s)	302
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	206
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	2 cut(s)	239, 326
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	19, 155, 236
HpyCH4III	ACNGT	2 cut(s)	262, 352
HpyCH4V	TGCA	5 cut(s)	17, 50, 55, 129, 134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	3 cut(s)	21, 171, 182
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	3, 111, 322
LpnPI	CCDG	4 cut(s)	139, 267, 273, 311
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	37
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	3 cut(s)	5, 113, 324
MboI	GATC	3 cut(s)	3, 111, 322
MboII	GAAGA	2 cut(s)	80, 121
MluCI	AATT	5 cut(s)	98, 148, 189, 282, 358
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	2 cut(s)	220, 322
Mph1103I	ATGCAT	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	2 cut(s)	20, 320
MspI	CCGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	26
NaeI	GCCGGC	1 cut(s)	255
NdeII	GATC	3 cut(s)	3, 111, 322
NgoMIV	GCCGGC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	52
PdiI	GCCGGC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	131
PvuII	CAGCTG	2 cut(s)	20, 320
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	3, 111, 322
SchI	GAGTC	1 cut(s)	26
SetI	ASST	4 cut(s)	22, 144, 231, 322
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	127
Sse9I	AATT	5 cut(s)	98, 148, 189, 282, 358
SsiI	CCGC	2 cut(s)	29, 200
TaaI	ACNGT	2 cut(s)	262, 352
TaqI	TCGA	1 cut(s)	231
TasI	AATT	5 cut(s)	98, 148, 189, 282, 358
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	3 cut(s)	136, 312, 345
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	346
TspRI	CASTG	3 cut(s)	136, 312, 345
VspI	ATTAAT	1 cut(s)	281
XapI	RAATTY	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.