Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016558

Physical Location & Seq

Genomic Coordinates Forward (+)

750101 .. 752805

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGATCTGTTCCGAGTTTGGTCAGGGATGGATTTCTTAGCTTGGAGAGGAATGGCTTACACACTTCTTCTTCTCAACTTCGTCTTTGCTTGCCAACTTCTTCTTCTCCAACCTCTCGTTTCCGCTCTAGATGGTCAATCGGTAGATGCTGCTGAGTTATTCGAGAGAGCTTCACAAAGTATCAAGGTTAAGCGTTATAGTGATGCCCTCGATGATCTGAATGCAGCCATTGAAGCAGACCCTGCGCTTTCAGAAGCTTATTTTAAGCGTGCCTCTGTGCTTCGTCATTTTTGCAGATACGAAGACTCTGAGAATAGTTACCAGAAATATCTGGAATTCAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAGAGTGCTTTGGAGACTGCCTCGACTCTGTATGAATCAAAGGATATTGCGAAAGCTCTTGAATTTGTTGATAAAGTTGTTCTTGTCTTCTCTCCAGCTTGCTCTAAGGCAAAGCTTCTCAAAGTGAAGCTCCTTATGGTGTCTAAAGACTACTCAGGTGCAATTTCTGAGACTGGTTATATTCTCAAGGAAGATGAAAATAACCTCGAGGCGTTGCTCCTTCGTGGCCGTGCCTACTACTATTTGGCGGATCATGATATCGCCCAAAGGCATTACCAAAAAGGGCTTCGTCTTGATCCGGAACACAGTGAACTGAAGAAAGCATACTTCGGATTGAAAAAACTGCTCAAGAAAACAAAAAGCGCAGAAGATAATGCAAACAAAGGAAAGTTGCGAGTTTCAGCAGAGGAATATAAAGAAGCTATTGCTCTGGACCCTGAACACACGGCAAATAACGTTCATCTCTATCTTGGACTATGCAAGGTCTCAGTCAGGCTCGGCCGTGGAAAAGACGGCTTAAATAGCTGTAATGAAGCACTTAACATCGATGCAGAACTGATTGAAGCTTTACATCAGAGAGGAGAAGCTAAACTGTTGCTTGAAGATTGGGAAGGAGCTGTGGAGGATTTAAAGCAAGCTGCTCAAAACTCTCAGGACATGGAAATTCATGAATCACTTGGTAAAGCAGAGAAAGCACTGAAGATGAGCAAACGAAAAGATTGGTATAAGATTCTTGGAATTTCCAGAACCGCCTCTATCTCAGAAATCAAAAAAGCTTACAAGAAGCTTGCTCTTCAATGGCATCCCGATAAAAACGTAGGCAATAGAGAAGAAGCTGAGAACAAATTCCGAGAAATCGCTGCAGCTTATGAGATTCTTGGAGATGACGATAAGCGGGCGAGATTTGACAGAGGAGAGGATCTTGAAGATATGGGTGGAGGCGGCGGTGGAGGATATAATCCGTTCCATGGTGGTGGTGGTGGTGGACAACAATACACTTTCCATTTCGAGGGTGGTTTTCCTGGTGGTGGTGGCGGTTTTGGTGGTTTCGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031974 GO:0035821 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043902 GO:0043903 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044788 GO:0044794 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0051702 GO:0051704 GO:0051817 GO:0051851 GO:0065007 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05164 map04141 map05164

Pfam Domains

Protein Families

DnaJ TPR_16 TPR_2 TPR_8

Protein Analysis

482

Amino Acids

53.69

Weight (kDa)

5.93

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	370 - 433	8.1e-26	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03160
fragaria_vesca	FvH4_6g15690
malus_domestica	MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica	Prupe.6G238400_v2.0.a1
pyrus_communis	pycom12g11900
rosa_chinensis	RchiOBHm_Chr3g0469391
rosa_laevigata	RLG00000024353
rosa_multiflora	Rmu_sc0013330.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411930
rosa_rugosa	Rorug03G0101400
rosa_samantha	Rh3CG165100 Rh3DG201200
rosa_wichuraiana	Rw3G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	7 cut(s)	123, 638, 1140, 1285, 1332, 1335, 1425
AclI	AACGTT	1 cut(s)	846
AclWI	GGATC	4 cut(s)	12, 648, 680, 1317
AcoI	YGGCCR	2 cut(s)	616, 889
AcsI	RAATTY	5 cut(s)	335, 452, 1053, 1128, 1235
AcuI	CTGAAG	2 cut(s)	725, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	1358, 1399, 1418
AgsI	TTSAA	8 cut(s)	233, 340, 452, 727, 953, 992, 1187, 1316
AjnI	CCWGG	1 cut(s)	1411
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 660, 692
Alw26I	GTCTC	3 cut(s)	398, 554, 880
AlwI	GGATC	4 cut(s)	12, 648, 680, 1317
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	596
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	2 cut(s)	616, 889
ApeKI	GCWGC	5 cut(s)	149, 224, 1028, 1250, 1253
ApoI	RAATTY	5 cut(s)	335, 452, 1053, 1128, 1235
Asp700I	GAANNNNTTC	1 cut(s)	1235
AspLEI	GCGC	2 cut(s)	247, 755
AspS9I	GGNCC	1 cut(s)	823
AsuII	TTCGAA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	823
BarI	GAAGNNNNNNTAC	2 cut(s)	698, 730
BbsI	GAAGAC	2 cut(s)	309, 469
BbvI	GCAGC	5 cut(s)	136, 236, 1015, 1237, 1265
BccI	CCATC	2 cut(s)	22, 125
BceAI	ACGGC	4 cut(s)	603, 852, 876, 919
BciT130I	CCWGG	1 cut(s)	1413
BcoDI	GTCTC	3 cut(s)	398, 554, 880
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	1251
BisI	GCNGC	6 cut(s)	150, 225, 1029, 1251, 1254, 1333
BlsI	GCNGC	6 cut(s)	151, 226, 1030, 1252, 1255, 1334
Bme1390I	CCNGG	1 cut(s)	1413
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	823
BmiI	GGNNCC	1 cut(s)	825
BmrFI	CCNGG	1 cut(s)	1413
BmsI	GCATC	4 cut(s)	136, 193, 928, 1201
BpiI	GAAGAC	2 cut(s)	309, 469
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	353
BpuEI	CTTGAG	2 cut(s)	560, 722
Bsa29I	ATCGAT	1 cut(s)	936
BsaI	GGTCTC	1 cut(s)	880
BsaJI	CCNNGG	2 cut(s)	892, 1357
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	3 cut(s)	1358, 1399, 1418
Bse1I	ACTGG	1 cut(s)	568
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	1413
BseCI	ATCGAT	1 cut(s)	936
BseDI	CCNNGG	2 cut(s)	892, 1357
BseGI	GGATG	2 cut(s)	33, 1192
BseLI	CCNNNNNNNGG	3 cut(s)	1358, 1399, 1418
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	2 cut(s)	984, 1317
BseX3I	CGGCCG	1 cut(s)	889
BseXI	GCAGC	5 cut(s)	136, 236, 1015, 1237, 1265
Bsh1285I	CGRYCG	1 cut(s)	892
BshFI	GGCC	2 cut(s)	618, 891
BshVI	ATCGAT	1 cut(s)	936
BsiEI	CGRYCG	1 cut(s)	892
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	689
BslI	CCNNNNNNNGG	3 cut(s)	1358, 1399, 1418
BsmAI	GTCTC	3 cut(s)	398, 554, 880
BsmI	GAATGC	2 cut(s)	226, 361
BsnI	GGCC	2 cut(s)	618, 891
Bso31I	GGTCTC	1 cut(s)	880
BsoBI	CYCGRG	1 cut(s)	596
Bsp119I	TTCGAA	1 cut(s)	353
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	5 cut(s)	4, 214, 640, 685, 1309
Bsp19I	CCATGG	1 cut(s)	1357
BspACI	CCGC	7 cut(s)	123, 638, 1140, 1285, 1332, 1335, 1425
BspANI	GGCC	2 cut(s)	618, 891
BspDI	ATCGAT	1 cut(s)	936
BspEI	TCCGGA	1 cut(s)	688
BspHI	TCATGA	2 cut(s)	643, 1057
BspLI	GGNNCC	1 cut(s)	825
BspMAI	CTGCAG	1 cut(s)	1255
BspPI	GGATC	4 cut(s)	12, 648, 680, 1317
BspQI	GCTCTTC	1 cut(s)	1188
BspT104I	TTCGAA	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	880
BsrBI	CCGCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	892, 1357
BssMI	GATC	5 cut(s)	4, 214, 640, 685, 1309
BssT1I	CCWWGG	1 cut(s)	1357
Bst2UI	CCWGG	1 cut(s)	1413
Bst4CI	ACNGT	2 cut(s)	698, 984
Bst6I	CTCTTC	1 cut(s)	1188
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	6 cut(s)	91, 270, 490, 1026, 1179, 1287
BstDSI	CCRYGG	2 cut(s)	892, 1357
BstF5I	GGATG	2 cut(s)	33, 1192
BstHHI	GCGC	2 cut(s)	247, 755
BstKTI	GATC	5 cut(s)	7, 217, 643, 688, 1312
BstMAI	GTCTC	3 cut(s)	398, 554, 880
BstMBI	GATC	5 cut(s)	4, 214, 640, 685, 1309
BstMCI	CGRYCG	1 cut(s)	892
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 242, 395, 912, 1082
BstNI	CCWGG	1 cut(s)	1413
BstSCI	CCNGG	1 cut(s)	1411
BstSFI	CTRYAG	1 cut(s)	1251
BstV1I	GCAGC	5 cut(s)	136, 236, 1015, 1237, 1265
BstV2I	GAAGAC	2 cut(s)	309, 469
BstX2I	RGATCY	2 cut(s)	4, 1309
BstXI	CCANNNNNNTGG	1 cut(s)	1364
BstYI	RGATCY	2 cut(s)	4, 1309
BstZI	CGGCCG	1 cut(s)	889
Bsu15I	ATCGAT	1 cut(s)	936
BsuRI	GGCC	2 cut(s)	618, 891
BsuTUI	ATCGAT	1 cut(s)	936
BtgI	CCRYGG	2 cut(s)	892, 1357
BtsCI	GGATG	2 cut(s)	33, 1192
BtsIMutI	CAGTG	2 cut(s)	703, 1085
Cac8I	GCNNGC	6 cut(s)	91, 270, 490, 1026, 1179, 1287
CaiI	CAGNNNCTG	1 cut(s)	242
CciI	TCATGA	2 cut(s)	643, 1057
CfoI	GCGC	2 cut(s)	247, 755
Cfr13I	GGNCC	1 cut(s)	823
ClaI	ATCGAT	1 cut(s)	936
CviAII	CATG	4 cut(s)	644, 1048, 1058, 1358
DpnI	GATC	5 cut(s)	6, 216, 642, 687, 1311
DpnII	GATC	5 cut(s)	4, 214, 640, 685, 1309
DraI	TTTAAA	1 cut(s)	1020
EaeI	YGGCCR	2 cut(s)	616, 889
EagI	CGGCCG	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	1188
EarI	CTCTTC	1 cut(s)	1188
EciI	GGCGGA	1 cut(s)	653
EclXI	CGGCCG	1 cut(s)	889
Eco130I	CCWWGG	1 cut(s)	1357
Eco31I	GGTCTC	1 cut(s)	880
Eco32I	GATATC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	823
Eco52I	CGGCCG	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	725, 1109
Eco88I	CYCGRG	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	1411
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	1357
ErhI	CCWWGG	1 cut(s)	1357
FaeI	CATG	4 cut(s)	647, 1051, 1061, 1361
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	4 cut(s)	643, 1047, 1057, 1357
FauI	CCCGC	1 cut(s)	1278
Fnu4HI	GCNGC	6 cut(s)	150, 225, 1029, 1251, 1254, 1333
FokI	GGATG	2 cut(s)	40, 1179
Fsp4HI	GCNGC	6 cut(s)	150, 225, 1029, 1251, 1254, 1333
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	2 cut(s)	246, 754
GluI	GCNGC	6 cut(s)	150, 225, 1029, 1251, 1254, 1333
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	618, 891
HapII	CCGG	1 cut(s)	689
HhaI	GCGC	2 cut(s)	247, 755
Hin1II	CATG	4 cut(s)	647, 1051, 1061, 1361
Hin6I	GCGC	2 cut(s)	245, 753
HinP1I	GCGC	2 cut(s)	245, 753
HindIII	AAGCTT	5 cut(s)	255, 503, 954, 1164, 1175
HinfI	GANTC	7 cut(s)	305, 350, 415, 425, 1061, 1120, 1264
HpaII	CCGG	1 cut(s)	689
Hpy166II	GTNNAC	2 cut(s)	701, 1376
Hpy188I	TCNGA	9 cut(s)	14, 219, 253, 310, 559, 722, 966, 1153, 1241
Hpy8I	GTNNAC	2 cut(s)	701, 1376
HpyAV	CCTTC	2 cut(s)	620, 995
HpyCH4III	ACNGT	2 cut(s)	698, 984
HpyCH4IV	ACGT	2 cut(s)	846, 1206
HpyCH4V	TGCA	7 cut(s)	224, 294, 551, 767, 870, 941, 1253
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 242, 395, 912, 1082
HpySE526I	ACGT	2 cut(s)	846, 1206
Hsp92II	CATG	4 cut(s)	647, 1051, 1061, 1361
HspAI	GCGC	2 cut(s)	245, 753
Kpn2I	TCCGGA	1 cut(s)	688
Kzo9I	GATC	5 cut(s)	4, 214, 640, 685, 1309
LguI	GCTCTTC	1 cut(s)	1188
LmnI	GCTCC	3 cut(s)	525, 612, 1004
Lsp1109I	GCAGC	5 cut(s)	136, 236, 1015, 1237, 1265
LweI	GCATC	4 cut(s)	136, 193, 928, 1201
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	846, 1206
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	5 cut(s)	6, 216, 642, 687, 1311
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	4, 214, 640, 685, 1309
MflI	RGATCY	2 cut(s)	4, 1309
MluCI	AATT	6 cut(s)	335, 452, 552, 1053, 1128, 1235
MlyI	GAGTC	2 cut(s)	299, 409
MmeI	TCCRAC	1 cut(s)	133
MroI	TCCGGA	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	1235
MseI	TTAA	5 cut(s)	189, 264, 908, 930, 1019
MslI	CAYNNNNRTG	1 cut(s)	1362
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	1 cut(s)	1413
Mva1269I	GAATGC	2 cut(s)	226, 361
MvaI	CCWGG	1 cut(s)	1413
MwoI	GCNNNNNNNGC	5 cut(s)	233, 242, 395, 912, 1082
NcoI	CCATGG	1 cut(s)	1357
NdeII	GATC	5 cut(s)	4, 214, 640, 685, 1309
NlaIII	CATG	4 cut(s)	647, 1051, 1061, 1361
NlaIV	GGNNCC	1 cut(s)	825
NmeAIII	GCCGAG	1 cut(s)	867
NspV	TTCGAA	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	596
PagI	TCATGA	2 cut(s)	643, 1057
PciSI	GCTCTTC	1 cut(s)	1188
PctI	GAATGC	2 cut(s)	226, 361
PdmI	GAANNNNTTC	1 cut(s)	1235
PfeI	GAWTC	5 cut(s)	350, 425, 1061, 1120, 1264
PkrI	GCNGC	6 cut(s)	151, 226, 1030, 1252, 1255, 1334
PleI	GAGTC	2 cut(s)	299, 409
PpsI	GAGTC	2 cut(s)	299, 409
Psp1406I	AACGTT	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	1411
PspGI	CCWGG	1 cut(s)	1411
PspN4I	GGNNCC	1 cut(s)	825
PspPI	GGNCC	1 cut(s)	823
PspXI	VCTCGAGB	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	1255
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	4, 1309
RseI	CAYNNNNRTG	1 cut(s)	1362
SapI	GCTCTTC	1 cut(s)	1188
SaqAI	TTAA	5 cut(s)	189, 264, 908, 930, 1019
SatI	GCNGC	6 cut(s)	150, 225, 1029, 1251, 1254, 1333
Sau3AI	GATC	5 cut(s)	4, 214, 640, 685, 1309
Sau96I	GGNCC	1 cut(s)	823
SchI	GAGTC	2 cut(s)	299, 409
ScrFI	CCNGG	1 cut(s)	1413
SfaNI	GCATC	4 cut(s)	136, 193, 928, 1201
SfcI	CTRYAG	1 cut(s)	1251
Sfr274I	CTCGAG	1 cut(s)	596
SfuI	TTCGAA	1 cut(s)	353
SinI	GGWCC	1 cut(s)	823
SlaI	CTCGAG	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	1362
SmlI	CTYRAG	3 cut(s)	575, 596, 737
SmoI	CTYRAG	3 cut(s)	575, 596, 737
Sse9I	AATT	6 cut(s)	335, 452, 552, 1053, 1128, 1235
SsiI	CCGC	7 cut(s)	123, 638, 1140, 1285, 1332, 1335, 1425
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	1411
StyI	CCWWGG	1 cut(s)	1357
TaaI	ACNGT	2 cut(s)	698, 984
TaiI	ACGT	2 cut(s)	849, 1209
TaqI	TCGA	7 cut(s)	162, 210, 353, 413, 597, 936, 1398
TasI	AATT	6 cut(s)	335, 452, 552, 1053, 1128, 1235
TauI	GCSGC	1 cut(s)	1335
TfiI	GAWTC	5 cut(s)	350, 425, 1061, 1120, 1264
Tru1I	TTAA	5 cut(s)	189, 264, 908, 930, 1019
Tru9I	TTAA	5 cut(s)	189, 264, 908, 930, 1019
TscAI	CASTG	2 cut(s)	703, 1092
TseI	GCWGC	5 cut(s)	149, 224, 1028, 1250, 1253
TspDTI	ATGAA	7 cut(s)	371, 438, 600, 839, 936, 1046, 1074
TspGWI	ACGGA	1 cut(s)	1341
TspRI	CASTG	2 cut(s)	703, 1092
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	5 cut(s)	335, 452, 1053, 1128, 1235
XbaI	TCTAGA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1364, 1400
XhoI	CTCGAG	1 cut(s)	596
XmnI	GAANNNNTTC	1 cut(s)	1235
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.