Rroxscaffold_6G00411930

DnaJ homolog subfamily C member 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016558
Physical Location & Seq
Reverse (-)
34534705 .. 34538602
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411930.1

Sequence Viewer

Length: 1542 bp
ATGATTCGGTGTTCCTCATTCGCCATGGATTTCTTGGCTTGGAGAGGATTGCTCTACACAGTGTTCATCCTGCATTTCGTGTTCCTCTGCCAGCTTCTTCTTCTTCAACCTCTCGTTTCTGCTATAGATGGCAAACCTGGTAATGCGGCTGAGTTGTTTGAAAGGGTTTCACAGAGTGTAAAGGTGAAGAGATATAGCGAGGCACTTAATGATCTTAATGCTGCCATAGAGGCAGACCCAACACTTTCAGAAGCATATTATCATCGTGCGTCTGTTCTTCGCCAGATATGCAGATATGAGGAATCAGAGAAGAGCTACAAAAAGTTTTTGGAGTTGAAACCCCGAGATTCAGTTGCAGAGAAGGAGCTTTCTCAATTGAATCAGGCTAAGAGTGCTCTGGATACTGCTTTGACTCTCTTTGAATCAAGCGACTTTGCAAAATCTTTGGAATATGTCGAAAAAGTTGTTCTTGTTTTCTCTCCAGCATGTTCAAAGGCCAAACTCCTGAAGGTGAAATTGTTGTTAGCATCTAAAGACTATTCTGGTGTCATTGCGGAGGCTGGGTTCATTCTCAAAGAAGATGAAGATAATCTGGATGCATTATTACTTCGTGGCCGTGCTTACTATTATTTAGCTGATCATGATGTTGCTCAAAGGCATTACCAAAAGGGTCTCCGTCTAGATCCAGAGCACAGTGAACTGAAGAAAGCGTACTTTGGATTGAAGAACTTACTCAAAAAGACTAAAAGTGCCGAAGATAATGAAAAGAAGGGCAGGCTGCGAGTTGCAGTTGAGGATTTTAAGGCAGCCCTAGCAATGGACCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTGTGTAAACTCTTGGTCAAACTTGGCAGGGGAAAGGATGCTCTAAGTAGTTGCAATGAAGCACTTAATATTGATGGGGAGCTTCTTGAAGCCTTAGTTCAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGAGGGAGCTGTGGAAGATCTAAAATCAGCAGCTCAAAAATCACCTCAGGATATGAATATTCGAGAAACATACATGAGAGCCGAGAAAGCCTTAAAGATGAGTAAACGCAAAGACTGGTACAAGATTTTGGGAATTTCAAAGACTTCAAGTGTATCTGAGATTAAGCGTGCCTACAAGAAACTTGCTTTACAGTGGCATCCAGATAAAAACGTTGAAAATAGAGAAGAAGCAGAGGAGAAATTTCGAGAAATTGCTGCTGCATACGAGGTTCTTGGTGATGAAGAAAACGTACAAAGTATGACAGAGGTGAAGATATTGAAGAGATGGGGATGGGTGGTGGGGGTGGTGGTTTTAACCCTTTCCATGGTGGCGGTGGACAGCAATATACTTTCACTTTCGAAGGTGGCTTTCCTGGCGGTGGTGGTGGATTTGATTTCCAGTTTTGATTTTCTTATCACTCAAGAATGGGTTCCTTCTGTCCAGATGCTTGAGCTAGCAGAGTGCTATAAATTGTGTCATTCTATGGGAGCCCCCGAGCCAATATGA

Protein Analysis

513

Amino Acids

57.93

Weight (kDa)

6.46

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 370 - 428 3.4e-23 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03160
fragaria_vesca FvH4_6g15690
malus_domestica MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica Prupe.6G238400_v2.0.a1
pyrus_communis pycom12g11900
rosa_chinensis RchiOBHm_Chr3g0469391
rosa_laevigata RLG00000024353
rosa_multiflora Rmu_sc0013330.1_g000002
rosa_roxburghii Rroxscaffold_6G00411930
rosa_rugosa Rorug03G0101400
rosa_samantha Rh3CG165100 Rh3DG201200
rosa_wichuraiana Rw3G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 146, 554, 1367, 1412
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 2 cut(s) 1128, 1235
AcuI CTGAAG 2 cut(s) 527, 722
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 4 cut(s) 713, 846, 1115, 1287
AfiI CCNNNNNNNGG 3 cut(s) 817, 1360, 1414
AjnI CCWGG 2 cut(s) 136, 1407
AloI GAACNNNNNNTCC 2 cut(s) 548, 580
AluBI AGCT 9 cut(s) 94, 315, 367, 635, 943, 974, 1004, 1028, 1489
AluI AGCT 9 cut(s) 94, 315, 367, 635, 943, 974, 1004, 1028, 1489
Alw21I GWGCWC 2 cut(s) 397, 693
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 2 cut(s) 342, 1529
AoxI GGCC 2 cut(s) 495, 613
ApeKI GCWGC 6 cut(s) 221, 778, 806, 1025, 1250, 1253
ApoI RAATTY 2 cut(s) 1128, 1235
Asp700I GAANNNNTTC 1 cut(s) 1464
AspS9I GGNCC 1 cut(s) 820
AsuHPI GGTGA 6 cut(s) 196, 523, 980, 1029, 1283, 1315
AsuII TTCGAA 1 cut(s) 1394
AsuNHI GCTAGC 1 cut(s) 1489
AvaI CYCGRG 2 cut(s) 342, 1529
AvaII GGWCC 1 cut(s) 820
AxyI CCTNAGG 1 cut(s) 1041
BanII GRGCYC 1 cut(s) 1528
BarI GAAGNNNNNNTAC 4 cut(s) 695, 727, 1269, 1301
Bbv12I GWGCWC 2 cut(s) 397, 693
BbvI GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
BccI CCATC 4 cut(s) 122, 929, 1314, 1320
BceAI ACGGC 1 cut(s) 600
BciT130I CCWGG 2 cut(s) 138, 1409
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 3 cut(s) 680, 812, 1490
BfmI CTRYAG 1 cut(s) 123
BfuI GTATCC 1 cut(s) 394
BglI GCCNNNNNGGC 1 cut(s) 230
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 7 cut(s) 147, 222, 779, 807, 1026, 1251, 1254
BlsI GCNGC 7 cut(s) 148, 223, 780, 808, 1027, 1252, 1255
Bme1390I CCNGG 2 cut(s) 138, 1409
Bme18I GGWCC 1 cut(s) 820
BmeT110I CYCGRG 2 cut(s) 342, 1529
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 3 cut(s) 822, 1467, 1525
BmrFI CCNGG 2 cut(s) 138, 1409
BmsI GCATC 5 cut(s) 536, 586, 889, 1201, 1470
BmtI GCTAGC 1 cut(s) 1493
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 1394
BpuEI CTTGAG 2 cut(s) 1440, 1505
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 24, 1359
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 817, 1360, 1414
Bse1I ACTGG 2 cut(s) 1115, 1434
Bse21I CCTNAGG 1 cut(s) 1041
Bse3DI GCAATG 3 cut(s) 549, 822, 922
BseBI CCWGG 2 cut(s) 138, 1409
BseDI CCNNGG 2 cut(s) 24, 1359
BseGI GGATG 5 cut(s) 66, 601, 904, 1192, 1331
BseLI CCNNNNNNNGG 3 cut(s) 817, 1360, 1414
BseMI GCAATG 3 cut(s) 549, 822, 922
BseMII CTCAG 3 cut(s) 141, 1055, 1143
BseNI ACTGG 2 cut(s) 1115, 1434
BseRI GAGGAG 1 cut(s) 1244
BseXI GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 2 cut(s) 497, 615
BsiHKAI GWGCWC 2 cut(s) 397, 693
BsiHKCI CYCGRG 2 cut(s) 342, 1529
BslI CCNNNNNNNGG 3 cut(s) 817, 1360, 1414
BsmAI GTCTC 1 cut(s) 677
BsnI GGCC 2 cut(s) 497, 615
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 2 cut(s) 342, 1529
Bsp119I TTCGAA 1 cut(s) 1394
Bsp1286I GDGCHC 3 cut(s) 397, 693, 1528
Bsp1407I TGTACA 1 cut(s) 844
Bsp143I GATC 4 cut(s) 211, 637, 682, 1012
Bsp19I CCATGG 2 cut(s) 24, 1359
BspACI CCGC 4 cut(s) 146, 554, 1367, 1412
BspANI GGCC 2 cut(s) 497, 615
BspCNI CTCAG 3 cut(s) 142, 1054, 1144
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 3 cut(s) 822, 1467, 1525
BspOI GCTAGC 1 cut(s) 1493
BspPI GGATC 1 cut(s) 677
BspQI GCTCTTC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 1394
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 3 cut(s) 549, 822, 922
BsrGI TGTACA 1 cut(s) 844
BsrI ACTGG 2 cut(s) 1115, 1434
BssECI CCNNGG 2 cut(s) 24, 1359
BssMI GATC 4 cut(s) 211, 637, 682, 1012
BssT1I CCWWGG 2 cut(s) 24, 1359
Bst2UI CCWGG 2 cut(s) 138, 1409
Bst4CI ACNGT 3 cut(s) 61, 695, 1188
Bst6I CTCTTC 3 cut(s) 182, 305, 1310
BstAUI TGTACA 1 cut(s) 844
BstBI TTCGAA 1 cut(s) 1394
BstC8I GCNNGC 4 cut(s) 92, 776, 1164, 1491
BstDEI CTNAG 6 cut(s) 150, 387, 905, 955, 1041, 1152
BstDSI CCRYGG 2 cut(s) 24, 1359
BstF5I GGATG 5 cut(s) 66, 601, 904, 1192, 1331
BstKTI GATC 4 cut(s) 214, 640, 685, 1015
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 4 cut(s) 211, 637, 682, 1012
BstMWI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1409
BstNI CCWGG 2 cut(s) 138, 1409
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 136, 1407
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
BstX2I RGATCY 2 cut(s) 682, 1012
BstYI RGATCY 2 cut(s) 682, 1012
Bsu36I CCTNAGG 1 cut(s) 1041
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 497, 615
BtgI CCRYGG 2 cut(s) 24, 1359
BtsCI GGATG 5 cut(s) 66, 601, 904, 1192, 1331
BtsIMutI CAGTG 3 cut(s) 66, 700, 1193
Cac8I GCNNGC 4 cut(s) 92, 776, 1164, 1491
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 820
CseI GACGC 1 cut(s) 258
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 4 cut(s) 712, 845, 1114, 1286
CviAII CATG 5 cut(s) 25, 486, 641, 1069, 1360
CviQI GTAC 4 cut(s) 712, 845, 1114, 1286
DdeI CTNAG 6 cut(s) 150, 387, 905, 955, 1041, 1152
DpnI GATC 4 cut(s) 213, 639, 684, 1014
DpnII GATC 4 cut(s) 211, 637, 682, 1012
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 3 cut(s) 182, 305, 1310
EarI CTCTTC 3 cut(s) 182, 305, 1310
Eco130I CCWWGG 2 cut(s) 24, 1359
Eco24I GRGCYC 1 cut(s) 1528
Eco31I GGTCTC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 527, 722
Eco81I CCTNAGG 1 cut(s) 1041
Eco88I CYCGRG 2 cut(s) 342, 1529
EcoRII CCWGG 2 cut(s) 136, 1407
EcoT14I CCWWGG 2 cut(s) 24, 1359
EcoT22I ATGCAT 1 cut(s) 601
EcoT38I GRGCYC 1 cut(s) 1528
ErhI CCWWGG 2 cut(s) 24, 1359
FaeI CATG 5 cut(s) 28, 489, 644, 1072, 1363
FalI AAGNNNNNCTT 4 cut(s) 453, 485, 963, 995
FatI CATG 5 cut(s) 24, 485, 640, 1068, 1359
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 7 cut(s) 147, 222, 779, 807, 1026, 1251, 1254
FokI GGATG 5 cut(s) 53, 608, 911, 1179, 1338
FriOI GRGCYC 1 cut(s) 1528
Fsp4HI GCNGC 7 cut(s) 147, 222, 779, 807, 1026, 1251, 1254
FspBI CTAG 3 cut(s) 680, 812, 1490
GluI GCNGC 7 cut(s) 147, 222, 779, 807, 1026, 1251, 1254
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 497, 615
HgaI GACGC 1 cut(s) 258
Hin1II CATG 5 cut(s) 28, 489, 644, 1072, 1363
HinfI GANTC 6 cut(s) 4, 302, 347, 379, 412, 422
HphI GGTGA 6 cut(s) 196, 523, 980, 1029, 1283, 1315
Hpy166II GTNNAC 4 cut(s) 698, 869, 1100, 1372
Hpy188I TCNGA 5 cut(s) 250, 307, 963, 984, 1153
Hpy8I GTNNAC 4 cut(s) 698, 869, 1100, 1372
HpyAV CCTTC 5 cut(s) 355, 502, 763, 1390, 1479
HpyCH4III ACNGT 3 cut(s) 61, 695, 1188
HpyCH4IV ACGT 2 cut(s) 1206, 1284
HpyCH4V TGCA 9 cut(s) 73, 291, 356, 437, 599, 788, 836, 915, 1256
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1409
HpyF3I CTNAG 6 cut(s) 150, 387, 905, 955, 1041, 1152
HpySE526I ACGT 2 cut(s) 1206, 1284
Hsp92II CATG 5 cut(s) 28, 489, 644, 1072, 1363
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 4 cut(s) 211, 637, 682, 1012
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 4 cut(s) 364, 940, 1001, 1523
Lsp1109I GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
LweI GCATC 5 cut(s) 536, 586, 889, 1201, 1470
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 3 cut(s) 680, 812, 1490
MaeII ACGT 2 cut(s) 1206, 1284
MalI GATC 4 cut(s) 213, 639, 684, 1014
MboI GATC 4 cut(s) 211, 637, 682, 1012
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 2 cut(s) 682, 1012
MhlI GDGCHC 3 cut(s) 397, 693, 1528
MluCI AATT 6 cut(s) 374, 515, 1128, 1235, 1245, 1505
MlyI GAGTC 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 1464
MseI TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1349
MspR9I CCNGG 2 cut(s) 138, 1409
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 2 cut(s) 138, 1409
MwoI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1409
NcoI CCATGG 2 cut(s) 24, 1359
NdeII GATC 4 cut(s) 211, 637, 682, 1012
NheI GCTAGC 1 cut(s) 1489
NlaIII CATG 5 cut(s) 28, 489, 644, 1072, 1363
NlaIV GGNNCC 3 cut(s) 822, 1467, 1525
NmeAIII GCCGAG 1 cut(s) 1102
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 1 cut(s) 489
NspV TTCGAA 1 cut(s) 1394
PagI TCATGA 1 cut(s) 640
PciSI GCTCTTC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 1464
PfeI GAWTC 5 cut(s) 4, 302, 347, 379, 422
PkrI GCNGC 7 cut(s) 148, 223, 780, 808, 1027, 1252, 1255
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp1406I AACGTT 1 cut(s) 1206
Psp6I CCWGG 2 cut(s) 136, 1407
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 136, 1407
PspN4I GGNNCC 3 cut(s) 822, 1467, 1525
PspPI GGNCC 1 cut(s) 820
PsuI RGATCY 2 cut(s) 682, 1012
RsaI GTAC 4 cut(s) 713, 846, 1115, 1287
RsaNI GTAC 4 cut(s) 712, 845, 1114, 1286
SapI GCTCTTC 1 cut(s) 305
SaqAI TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1349
SatI GCNGC 7 cut(s) 147, 222, 779, 807, 1026, 1251, 1254
Sau3AI GATC 4 cut(s) 211, 637, 682, 1012
Sau96I GGNCC 1 cut(s) 820
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 138, 1409
SduI GDGCHC 3 cut(s) 397, 693, 1528
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 5 cut(s) 536, 586, 889, 1201, 1470
SfcI CTRYAG 1 cut(s) 123
SfuI TTCGAA 1 cut(s) 1394
SinI GGWCC 1 cut(s) 820
SmlI CTYRAG 2 cut(s) 1455, 1484
SmoI CTYRAG 2 cut(s) 1455, 1484
Sse9I AATT 6 cut(s) 374, 515, 1128, 1235, 1245, 1505
SsiI CCGC 4 cut(s) 146, 554, 1367, 1412
SspI AATATT 2 cut(s) 931, 1054
SspMI CTAG 3 cut(s) 680, 812, 1490
StyD4I CCNGG 2 cut(s) 136, 1407
StyI CCWWGG 2 cut(s) 24, 1359
TaaI ACNGT 3 cut(s) 61, 695, 1188
TaiI ACGT 2 cut(s) 1209, 1287
TaqI TCGA 4 cut(s) 456, 1057, 1240, 1394
TasI AATT 6 cut(s) 374, 515, 1128, 1235, 1245, 1505
TatI WGTACW 1 cut(s) 844
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 5 cut(s) 4, 302, 347, 379, 422
Tru1I TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1349
Tru9I TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1349
TscAI CASTG 3 cut(s) 66, 700, 1193
TseI GCWGC 6 cut(s) 221, 778, 806, 1025, 1250, 1253
TspDTI ATGAA 8 cut(s) 55, 556, 597, 777, 842, 933, 1064, 1290
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 3 cut(s) 66, 700, 1193
VpaK11BI GGWCC 1 cut(s) 820
XapI RAATTY 2 cut(s) 1128, 1235
XbaI TCTAGA 1 cut(s) 679
XceI RCATGY 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 2 cut(s) 31, 1366
XmnI GAANNNNTTC 1 cut(s) 1464
XspI CTAG 3 cut(s) 680, 812, 1490
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.