Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016558

Physical Location & Seq

Genomic Coordinates Reverse (-)

18277057 .. 18282344

Gene Structure 5288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG201200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATTCGGTGTTCCTCATTCGCCATGGACTTATTGGCTTGGAGAGGATTGCTTTACACAGTGTTCATTCTGCATTTCGTGTTTCTCTGCCAGCTTCTTCTTCTTCAACCTCTCGTTTCTGCTATAGATGGCAAACCTGGTAATGCCGCTGAGTTGTTTGAAAGGGTTTCACAGAGTGTAAAGGTGAAGAGATATAGCGAGGCACTTAATGATCTTAATGCTGCCATAGAGGCAGATCCAACACTTTCAGAAGCATATTATCATCGTGCATCTGTTCTTCGCCAGATATGCAGATATGAGGAATCAGAGAAGAGCTACAAAAAGTTTTTGGAGTTGAAACCCCGAGATTCAGTTGCAGAGAAGGAGCTTTCTCAATTGAATCAGGCTAAGAGTGCTCTGGATACTGCTTTGACTCTCTTTGAATCAAGCGACTTTGCAAAATCTTTGGAATATGTCGAAAAAGTTGTTCTTGTTTTCTCTCCAGCATGTTCAAAGGCCAAACTCCTGAAGGTGAAATTGTTGTTGGCATCTAAAGACTATTCTAGTGTCATTGCGGAGGCTGGGTTCATTCTCAAAGAAGATGAAGATAATCTGGATGCATTATTACTACGTGGCCGTGCTTACTATTATTTAGCTGATCATGATGTTGCTCAAAGGCATTACCAAAAGGGTCTCCGCCTAGATCCAGAGCATGGTGAACTGAAGAAAGCGTACTTTGGATTGAAGAACTTACTCAAAAAGACTAAAAGTGCCGAAGATAATGAAAAGAAGGGCAGGCTGCGAGTTGCAGTTGAGGATTTTAAGGCAGCCCTAGCAATGGACCCTAATCATCTTGCATATAATGTACATCTTCATCTTGGCTTGTGTAAACTCTTGGTCAAACTTGGCAGGGGAAAGGATGCTCTAAGTAGTTGCAATGAAGCACTTAATATTGATGAGGAGCTTCTTGAAGCCTTAGTTCAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGAGGGAGCTGTGGAAGATCTAAAATCAGCAGCTCAAAAATCACCTCAGGTTAGCCATTGTTCTATAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031974 GO:0035821 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043902 GO:0043903 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044788 GO:0044794 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0051702 GO:0051704 GO:0051817 GO:0051851 GO:0065007 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05164 map04141 map05164

Pfam Domains

Protein Families

DnaJ TPR_16 TPR_2 TPR_8

Protein Analysis

355

Amino Acids

39.86

Weight (kDa)

6.53

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03160
fragaria_vesca	FvH4_6g15690
malus_domestica	MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica	Prupe.6G238400_v2.0.a1
pyrus_communis	pycom12g11900
rosa_chinensis	RchiOBHm_Chr3g0469391
rosa_laevigata	RLG00000024353
rosa_multiflora	Rmu_sc0013330.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411930
rosa_rugosa	Rorug03G0101400
rosa_samantha	Rh3CG165100 Rh3DG201200
rosa_wichuraiana	Rw3G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	3 cut(s)	147, 554, 676
AclWI	GGATC	2 cut(s)	230, 677
AcoI	YGGCCR	1 cut(s)	613
AcuI	CTGAAG	2 cut(s)	527, 722
AdeI	CACNNNGTG	1 cut(s)	176
AfaI	GTAC	2 cut(s)	713, 846
AfiI	CCNNNNNNNGG	2 cut(s)	692, 817
AgsI	TTSAA	8 cut(s)	107, 161, 337, 379, 422, 492, 724, 950
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	8 cut(s)	94, 315, 367, 635, 943, 974, 1004, 1028
AluI	AGCT	8 cut(s)	94, 315, 367, 635, 943, 974, 1004, 1028
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	2 cut(s)	230, 677
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	2 cut(s)	495, 613
ApeKI	GCWGC	4 cut(s)	221, 778, 806, 1025
AspS9I	GGNCC	1 cut(s)	820
AsuHPI	GGTGA	5 cut(s)	196, 523, 707, 980, 1029
AvaI	CYCGRG	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	1041
BarI	GAAGNNNNNNTAC	2 cut(s)	695, 727
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	208, 765, 818, 1037
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	3 cut(s)	543, 680, 812
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	5 cut(s)	147, 222, 779, 807, 1026
BlsI	GCNGC	5 cut(s)	148, 223, 780, 808, 1027
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	820
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	820
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	4 cut(s)	278, 536, 586, 889
BpmI	CTGGAG	1 cut(s)	465
BsaAI	YACGTR	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 817
Bse21I	CCTNAGG	1 cut(s)	1041
Bse3DI	GCAATG	3 cut(s)	549, 822, 922
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	601, 904
BseLI	CCNNNNNNNGG	2 cut(s)	692, 817
BseMI	GCAATG	3 cut(s)	549, 822, 922
BseMII	CTCAG	2 cut(s)	141, 1055
BseRI	GAGGAG	1 cut(s)	953
BseXI	GCAGC	4 cut(s)	208, 765, 818, 1037
BseYI	CCCAGC	1 cut(s)	560
BshFI	GGCC	2 cut(s)	497, 615
BsiHKAI	GWGCWC	1 cut(s)	397
BsiHKCI	CYCGRG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	692, 817
BsmAI	GTCTC	1 cut(s)	677
BsnI	GGCC	2 cut(s)	497, 615
Bso31I	GGTCTC	1 cut(s)	677
BsoBI	CYCGRG	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	5 cut(s)	211, 235, 637, 682, 1012
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	3 cut(s)	147, 554, 676
BspANI	GGCC	2 cut(s)	497, 615
BspCNI	CTCAG	2 cut(s)	142, 1054
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	822
BspPI	GGATC	2 cut(s)	230, 677
BspQI	GCTCTTC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	3 cut(s)	549, 822, 922
BsrGI	TGTACA	1 cut(s)	844
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	5 cut(s)	211, 235, 637, 682, 1012
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	182, 305
BstAUI	TGTACA	1 cut(s)	844
BstBAI	YACGTR	1 cut(s)	611
BstC8I	GCNNGC	2 cut(s)	92, 776
BstDEI	CTNAG	5 cut(s)	150, 387, 905, 955, 1041
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	601, 904
BstKTI	GATC	5 cut(s)	214, 238, 640, 685, 1015
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	5 cut(s)	211, 235, 637, 682, 1012
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 288, 392, 812
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	4 cut(s)	208, 765, 818, 1037
BstX2I	RGATCY	3 cut(s)	235, 682, 1012
BstYI	RGATCY	3 cut(s)	235, 682, 1012
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	497, 615
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	601, 904
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	92, 776
CciI	TCATGA	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	820
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	712, 845
CviAII	CATG	4 cut(s)	25, 486, 641, 692
CviQI	GTAC	2 cut(s)	712, 845
DdeI	CTNAG	5 cut(s)	150, 387, 905, 955, 1041
DpnI	GATC	5 cut(s)	213, 237, 639, 684, 1014
DpnII	GATC	5 cut(s)	211, 235, 637, 682, 1012
DraIII	CACNNNGTG	1 cut(s)	176
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	2 cut(s)	182, 305
EarI	CTCTTC	2 cut(s)	182, 305
EciI	GGCGGA	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	820
Eco57I	CTGAAG	2 cut(s)	527, 722
Eco81I	CCTNAGG	1 cut(s)	1041
Eco88I	CYCGRG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	4 cut(s)	28, 489, 644, 695
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 963, 995
FatI	CATG	4 cut(s)	24, 485, 640, 691
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	5 cut(s)	147, 222, 779, 807, 1026
FokI	GGATG	2 cut(s)	608, 911
Fsp4HI	GCNGC	5 cut(s)	147, 222, 779, 807, 1026
FspBI	CTAG	3 cut(s)	543, 680, 812
GluI	GCNGC	5 cut(s)	147, 222, 779, 807, 1026
GsaI	CCCAGC	1 cut(s)	564
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	497, 615
Hin1II	CATG	4 cut(s)	28, 489, 644, 695
HinfI	GANTC	6 cut(s)	4, 302, 347, 379, 412, 422
HphI	GGTGA	5 cut(s)	196, 523, 707, 980, 1029
Hpy166II	GTNNAC	2 cut(s)	698, 869
Hpy188I	TCNGA	4 cut(s)	250, 307, 963, 984
Hpy188III	TCNNGA	6 cut(s)	398, 505, 593, 641, 686, 947
Hpy8I	GTNNAC	2 cut(s)	698, 869
HpyAV	CCTTC	3 cut(s)	355, 502, 763
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	610
HpyCH4V	TGCA	9 cut(s)	73, 269, 291, 356, 437, 599, 788, 836, 915
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 288, 392, 812
HpyF3I	CTNAG	5 cut(s)	150, 387, 905, 955, 1041
HpySE526I	ACGT	1 cut(s)	610
Hsp92II	CATG	4 cut(s)	28, 489, 644, 695
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	5 cut(s)	211, 235, 637, 682, 1012
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	3 cut(s)	364, 940, 1001
Lsp1109I	GCAGC	4 cut(s)	208, 765, 818, 1037
LweI	GCATC	4 cut(s)	278, 536, 586, 889
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	3 cut(s)	543, 680, 812
MaeII	ACGT	1 cut(s)	610
MalI	GATC	5 cut(s)	213, 237, 639, 684, 1014
MboI	GATC	5 cut(s)	211, 235, 637, 682, 1012
MfeI	CAATTG	1 cut(s)	374
MflI	RGATCY	3 cut(s)	235, 682, 1012
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	374, 515
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	263
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	4 cut(s)	207, 216, 801, 927
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	138
MunI	CAATTG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	4 cut(s)	230, 288, 392, 812
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	5 cut(s)	211, 235, 637, 682, 1012
NlaIII	CATG	4 cut(s)	28, 489, 644, 695
NlaIV	GGNNCC	1 cut(s)	822
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	1 cut(s)	489
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	305
PfeI	GAWTC	5 cut(s)	4, 302, 347, 379, 422
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	5 cut(s)	148, 223, 780, 808, 1027
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	1 cut(s)	820
PsuI	RGATCY	3 cut(s)	235, 682, 1012
RsaI	GTAC	2 cut(s)	713, 846
RsaNI	GTAC	2 cut(s)	712, 845
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	4 cut(s)	207, 216, 801, 927
SatI	GCNGC	5 cut(s)	147, 222, 779, 807, 1026
Sau3AI	GATC	5 cut(s)	211, 235, 637, 682, 1012
Sau96I	GGNCC	1 cut(s)	820
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	1 cut(s)	397
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	4 cut(s)	278, 536, 586, 889
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	820
Sse9I	AATT	2 cut(s)	374, 515
SsiI	CCGC	3 cut(s)	147, 554, 676
SspI	AATATT	1 cut(s)	931
SspMI	CTAG	3 cut(s)	543, 680, 812
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	613
TaqI	TCGA	1 cut(s)	456
TasI	AATT	2 cut(s)	374, 515
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	5 cut(s)	4, 302, 347, 379, 422
Tru1I	TTAA	4 cut(s)	207, 216, 801, 927
Tru9I	TTAA	4 cut(s)	207, 216, 801, 927
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	4 cut(s)	221, 778, 806, 1025
TspDTI	ATGAA	6 cut(s)	55, 556, 597, 777, 842, 933
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	820
XceI	RCATGY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	3 cut(s)	543, 680, 812
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.