RLG00000024353

DnaJ homolog subfamily C member 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016558
Physical Location & Seq
Reverse (-)
35037043 .. 35040557
3515 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024353

Sequence Viewer

Length: 1467 bp
ATGATTCGGTGTTCCTCATTCGCCATGGACTTATTGGCTTGGAGAGGATTGCTTTACACAGTGTTCATTCTGCATTTCGTGTTCCTCTGCCAGCTTCTTCTTCTTCAACCTCTCGTTTCTGCTCTAGATGGCAAACCTGGTAATGCGGCTGAGTTGTTTGAAAGGGTTTCACAGAGTGTAAAGGTGAAGAGATATAGCGAGGCACTTAATGATCTTAATGCTGCCATAGAGGCAGACCCCACACTTTCAGAAGCATATTATCATCGTGCATCTGTTCTTCGCCAGATATGCAGATATGAGGAATCAGAGAAGAGTTACAGAAAGTTCTTGGAGTTGAAACCCCGAGATTCAGTTGCAGAGAAGGAGCTTTCTCAATTGAATCAGGCTAAGAGTGCTCTGGATACTGCTTTGACTCTCTTTGAATCAAGCGACTTTGCAAAATCTTTGGAATATGTCGAAAAAGTTGTTCTTGTTTTCTCTCCAGCATGTTCAAAGGCCAAACTCCTGAAGGTGAAATTGTTGTTAGCATCTAAAGACTATTCTGGTGTCATTGCGGAGGCTGGGTTCATTCTCAAAGAAGATGAAGATAATCTGGATGCATTATTACTTCGTGGCCGTGCTTACTATTATTTAGCTGATCATGATGTTGCTCAAAGGCATTACCAAAAGGGTCTCCGCCTAGATCCAGAGCATGGTGAACTGAAGAAAGCGTACTTTGGATTGAAGAACTTACTCAAAAAGACTAAAAGTGCCGAAGATAATGAAAAGAAGGGCAGGCTGCGAGTTGCAGTTGAGGATTTTAAGGCAGCCCTAGCAATGGACCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTGTGTAAACTCTTGGTCAAACTTGGCAGGGGAAAGGATGCTCTAAGTAGTTGCAATGAAGCACTTAATATTGATGGGGAGCTTCTGGAAGCCTTAGTTCAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGAGGGAGCTGTGGAAGATCTAAAATCAGCAGCTCAAAAATCACCTCAGGATATGAATATTCGAGAAACATACATGAGAGCCGAGAAAGCCTTAAAGATGAGTAAACGCAAAGACTGGTACAAGATTTTGGGAGTTTCAAAGACTTCAAGTGTATCTGAGATTAAGCGTGCCTACAAGAAACTTGCTTTGCAGTGGCATCCAGATAAAAACGTTGAAAATAGAGAAGAAGCAGAGGAGAAATTTCGAGAAATTGCTGCTGCATATGAGGTTCTTGGTGATGAAGAAAAACGTACCAAGTATGACAGAGGTGAAGATATTGAAGAGGTGGGGATGGGTGGTGGAGGTGGTGGTTTTAACCCTTTCCATGGCGGCGGTGGACAGCAATATACTTTCACTTTCGAAGGTGGCTTTCCTGGCGGTGGTGGTGGATTTGGGGGAGGCTTTCCTGGTGGATTTGATTTCCAGTTTTGA

Protein Analysis

489

Amino Acids

54.55

Weight (kDa)

6.46

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 370 - 433 5.9e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03160
fragaria_vesca FvH4_6g15690
malus_domestica MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica Prupe.6G238400_v2.0.a1
pyrus_communis pycom12g11900
rosa_chinensis RchiOBHm_Chr3g0469391
rosa_laevigata RLG00000024353
rosa_multiflora Rmu_sc0013330.1_g000002
rosa_roxburghii Rroxscaffold_6G00411930
rosa_rugosa Rorug03G0101400
rosa_samantha Rh3CG165100 Rh3DG201200
rosa_wichuraiana Rw3G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 692
AciI CCGC 6 cut(s) 146, 554, 676, 1365, 1368, 1413
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 1 cut(s) 1235
AcuI CTGAAG 2 cut(s) 527, 722
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 4 cut(s) 713, 846, 1115, 1288
AfiI CCNNNNNNNGG 4 cut(s) 692, 817, 1361, 1415
AjnI CCWGG 3 cut(s) 136, 1408, 1441
AloI GAACNNNNNNTCC 2 cut(s) 548, 580
AluBI AGCT 7 cut(s) 94, 367, 635, 943, 974, 1004, 1028
AluI AGCT 7 cut(s) 94, 367, 635, 943, 974, 1004, 1028
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 2 cut(s) 495, 613
ApeKI GCWGC 6 cut(s) 221, 778, 806, 1025, 1250, 1253
ApoI RAATTY 1 cut(s) 1235
AspS9I GGNCC 1 cut(s) 820
AsuHPI GGTGA 7 cut(s) 196, 523, 707, 980, 1029, 1283, 1316
AsuII TTCGAA 1 cut(s) 1395
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 1 cut(s) 820
AxyI CCTNAGG 1 cut(s) 1041
BarI GAAGNNNNNNTAC 2 cut(s) 695, 727
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
BccI CCATC 3 cut(s) 122, 929, 1321
BceAI ACGGC 1 cut(s) 600
BciT130I CCWGG 3 cut(s) 138, 1410, 1443
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 3 cut(s) 125, 680, 812
BfuI GTATCC 1 cut(s) 394
BglI GCCNNNNNGGC 1 cut(s) 230
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 8 cut(s) 147, 222, 779, 807, 1026, 1251, 1254, 1366
BlsI GCNGC 8 cut(s) 148, 223, 780, 808, 1027, 1252, 1255, 1367
Bme1390I CCNGG 3 cut(s) 138, 1410, 1443
Bme18I GGWCC 1 cut(s) 820
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 820
BmiI GGNNCC 1 cut(s) 822
BmrFI CCNGG 3 cut(s) 138, 1410, 1443
BmsI GCATC 5 cut(s) 278, 536, 586, 889, 1201
BpmI CTGGAG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 1395
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 24, 1360
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 4 cut(s) 692, 817, 1361, 1415
Bse1I ACTGG 2 cut(s) 1115, 1459
Bse21I CCTNAGG 1 cut(s) 1041
Bse3DI GCAATG 3 cut(s) 549, 822, 922
BseBI CCWGG 3 cut(s) 138, 1410, 1443
BseDI CCNNGG 2 cut(s) 24, 1360
BseGI GGATG 4 cut(s) 601, 904, 1192, 1332
BseLI CCNNNNNNNGG 4 cut(s) 692, 817, 1361, 1415
BseMI GCAATG 3 cut(s) 549, 822, 922
BseMII CTCAG 3 cut(s) 141, 1055, 1143
BseNI ACTGG 2 cut(s) 1115, 1459
BseRI GAGGAG 1 cut(s) 1244
BseXI GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 2 cut(s) 497, 615
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 342
BslI CCNNNNNNNGG 4 cut(s) 692, 817, 1361, 1415
BsmAI GTCTC 1 cut(s) 677
BsnI GGCC 2 cut(s) 497, 615
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 342
Bsp119I TTCGAA 1 cut(s) 1395
Bsp1286I GDGCHC 1 cut(s) 397
Bsp1407I TGTACA 1 cut(s) 844
Bsp143I GATC 4 cut(s) 211, 637, 682, 1012
Bsp19I CCATGG 2 cut(s) 24, 1360
BspACI CCGC 6 cut(s) 146, 554, 676, 1365, 1368, 1413
BspANI GGCC 2 cut(s) 497, 615
BspCNI CTCAG 3 cut(s) 142, 1054, 1144
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 822
BspPI GGATC 1 cut(s) 677
BspT104I TTCGAA 1 cut(s) 1395
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 3 cut(s) 549, 822, 922
BsrGI TGTACA 1 cut(s) 844
BsrI ACTGG 2 cut(s) 1115, 1459
BssECI CCNNGG 2 cut(s) 24, 1360
BssMI GATC 4 cut(s) 211, 637, 682, 1012
BssT1I CCWWGG 2 cut(s) 24, 1360
Bst2UI CCWGG 3 cut(s) 138, 1410, 1443
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 3 cut(s) 182, 305, 1311
BstAUI TGTACA 1 cut(s) 844
BstBI TTCGAA 1 cut(s) 1395
BstC8I GCNNGC 3 cut(s) 92, 776, 1164
BstDEI CTNAG 6 cut(s) 150, 387, 905, 955, 1041, 1152
BstDSI CCRYGG 2 cut(s) 24, 1360
BstF5I GGATG 4 cut(s) 601, 904, 1192, 1332
BstKTI GATC 4 cut(s) 214, 640, 685, 1015
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 4 cut(s) 211, 637, 682, 1012
BstMWI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1410
BstNI CCWGG 3 cut(s) 138, 1410, 1443
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 136, 1408, 1441
BstV1I GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
BstX2I RGATCY 2 cut(s) 682, 1012
BstYI RGATCY 2 cut(s) 682, 1012
Bsu36I CCTNAGG 1 cut(s) 1041
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 497, 615
BtgI CCRYGG 2 cut(s) 24, 1360
BtsCI GGATG 4 cut(s) 601, 904, 1192, 1332
BtsI GCAGTG 1 cut(s) 1193
BtsIMutI CAGTG 2 cut(s) 66, 1193
Cac8I GCNNGC 3 cut(s) 92, 776, 1164
CciI TCATGA 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 820
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 4 cut(s) 712, 845, 1114, 1287
CviAII CATG 6 cut(s) 25, 486, 641, 692, 1069, 1361
CviQI GTAC 4 cut(s) 712, 845, 1114, 1287
DdeI CTNAG 6 cut(s) 150, 387, 905, 955, 1041, 1152
DpnI GATC 4 cut(s) 213, 639, 684, 1014
DpnII GATC 4 cut(s) 211, 637, 682, 1012
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 3 cut(s) 182, 305, 1311
EarI CTCTTC 3 cut(s) 182, 305, 1311
EciI GGCGGA 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 24, 1360
Eco31I GGTCTC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 820
Eco57I CTGAAG 2 cut(s) 527, 722
Eco81I CCTNAGG 1 cut(s) 1041
Eco88I CYCGRG 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 136, 1408, 1441
EcoT14I CCWWGG 2 cut(s) 24, 1360
EcoT22I ATGCAT 1 cut(s) 601
ErhI CCWWGG 2 cut(s) 24, 1360
FaeI CATG 6 cut(s) 28, 489, 644, 695, 1072, 1364
FalI AAGNNNNNCTT 4 cut(s) 453, 485, 963, 995
FatI CATG 6 cut(s) 24, 485, 640, 691, 1068, 1360
FauNDI CATATG 1 cut(s) 1258
FbaI TGATCA 1 cut(s) 637
Fnu4HI GCNGC 8 cut(s) 147, 222, 779, 807, 1026, 1251, 1254, 1366
FokI GGATG 4 cut(s) 608, 911, 1179, 1339
Fsp4HI GCNGC 8 cut(s) 147, 222, 779, 807, 1026, 1251, 1254, 1366
FspBI CTAG 3 cut(s) 125, 680, 812
GluI GCNGC 8 cut(s) 147, 222, 779, 807, 1026, 1251, 1254, 1366
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 497, 615
Hin1II CATG 6 cut(s) 28, 489, 644, 695, 1072, 1364
HinfI GANTC 6 cut(s) 4, 302, 347, 379, 412, 422
HphI GGTGA 7 cut(s) 196, 523, 707, 980, 1029, 1283, 1316
Hpy166II GTNNAC 4 cut(s) 698, 869, 1100, 1373
Hpy188I TCNGA 5 cut(s) 250, 307, 963, 984, 1153
Hpy8I GTNNAC 4 cut(s) 698, 869, 1100, 1373
HpyAV CCTTC 4 cut(s) 355, 502, 763, 1391
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 1206, 1285
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1410
HpyF3I CTNAG 6 cut(s) 150, 387, 905, 955, 1041, 1152
HpySE526I ACGT 2 cut(s) 1206, 1285
Hsp92II CATG 6 cut(s) 28, 489, 644, 695, 1072, 1364
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 4 cut(s) 211, 637, 682, 1012
LmnI GCTCC 3 cut(s) 364, 940, 1001
Lsp1109I GCAGC 6 cut(s) 208, 765, 818, 1037, 1237, 1240
LweI GCATC 5 cut(s) 278, 536, 586, 889, 1201
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 3 cut(s) 125, 680, 812
MaeII ACGT 2 cut(s) 1206, 1285
MaeIII GTNAC 1 cut(s) 314
MalI GATC 4 cut(s) 213, 639, 684, 1014
MboI GATC 4 cut(s) 211, 637, 682, 1012
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 2 cut(s) 682, 1012
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 4 cut(s) 374, 515, 1235, 1245
MlyI GAGTC 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 601
MseI TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1350
MspR9I CCNGG 3 cut(s) 138, 1410, 1443
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 3 cut(s) 138, 1410, 1443
MwoI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1410
NcoI CCATGG 2 cut(s) 24, 1360
NdeI CATATG 1 cut(s) 1258
NdeII GATC 4 cut(s) 211, 637, 682, 1012
NlaIII CATG 6 cut(s) 28, 489, 644, 695, 1072, 1364
NlaIV GGNNCC 1 cut(s) 822
NmeAIII GCCGAG 1 cut(s) 1102
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 1 cut(s) 489
NspV TTCGAA 1 cut(s) 1395
PagI TCATGA 1 cut(s) 640
PfeI GAWTC 5 cut(s) 4, 302, 347, 379, 422
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 8 cut(s) 148, 223, 780, 808, 1027, 1252, 1255, 1367
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp1406I AACGTT 1 cut(s) 1206
Psp6I CCWGG 3 cut(s) 136, 1408, 1441
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 3 cut(s) 136, 1408, 1441
PspN4I GGNNCC 1 cut(s) 822
PspPI GGNCC 1 cut(s) 820
PsuI RGATCY 2 cut(s) 682, 1012
RsaI GTAC 4 cut(s) 713, 846, 1115, 1288
RsaNI GTAC 4 cut(s) 712, 845, 1114, 1287
SaqAI TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1350
SatI GCNGC 8 cut(s) 147, 222, 779, 807, 1026, 1251, 1254, 1366
Sau3AI GATC 4 cut(s) 211, 637, 682, 1012
Sau96I GGNCC 1 cut(s) 820
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 3 cut(s) 138, 1410, 1443
SduI GDGCHC 1 cut(s) 397
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 5 cut(s) 278, 536, 586, 889, 1201
SfuI TTCGAA 1 cut(s) 1395
SinI GGWCC 1 cut(s) 820
Sse9I AATT 4 cut(s) 374, 515, 1235, 1245
SsiI CCGC 6 cut(s) 146, 554, 676, 1365, 1368, 1413
SspI AATATT 2 cut(s) 931, 1054
SspMI CTAG 3 cut(s) 125, 680, 812
StyD4I CCNGG 3 cut(s) 136, 1408, 1441
StyI CCWWGG 2 cut(s) 24, 1360
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 1209, 1288
TaqI TCGA 4 cut(s) 456, 1057, 1240, 1395
TasI AATT 4 cut(s) 374, 515, 1235, 1245
TatI WGTACW 1 cut(s) 844
TauI GCSGC 2 cut(s) 149, 1368
TfiI GAWTC 5 cut(s) 4, 302, 347, 379, 422
Tru1I TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1350
Tru9I TTAA 7 cut(s) 207, 216, 801, 927, 1088, 1158, 1350
TscAI CASTG 2 cut(s) 66, 1193
TseI GCWGC 6 cut(s) 221, 778, 806, 1025, 1250, 1253
TspDTI ATGAA 8 cut(s) 55, 556, 597, 777, 842, 933, 1064, 1290
TspRI CASTG 2 cut(s) 66, 1193
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 820
XapI RAATTY 1 cut(s) 1235
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 2 cut(s) 31, 1367
XspI CTAG 3 cut(s) 125, 680, 812
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.