Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016558

Physical Location & Seq

Genomic Coordinates Forward (+)

7930852 .. 7931601

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0101400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTCGGGAAGTGTTGTTGTATCGTGATTGGCCTCATTTTCGGACTTTTTGTTTTGGCCGGCGTCTCCATTTTAGTGTACTTTCTCGTAATTGCCAAGAGCATGCATAATACGTTGGTCCATTATGCGGTCACCGATGCCTCCCTGACCAAGTTCGACCTCACCGCCAATAACACCTTCCTCGACTACAACCTTACCCTCAAACTAAACCTTGAAAACCGTAGCCCCTTGGATTACAACTTCGACCTATTGGAGGCCGTGCCGGTTTTCAAGAGCCAAAACCTAAATGACATGACCAATCTTTCGAAGCCTTTCTACCTAGAACACAAGACCAATGTGACATTCCCGGCATTGTTTGCCGGGAACCACTCGGTGGCTCTCGGGGCTCAGGAGGCTTTTGATTTCGGGAAAGCTGATGTCTTTGATATTGTTTTGAAGATTAACAGTGAGTATTGGGCTAAGAGTGATTCGAAGAAGGTTAGTCTGAAGCAGGAGATGGCATGCTACTTGAAGGTCCCTCTGAATTCCAACGGAACAAATGCTGGTGAGAGTTTTCAGATTACCAAGTGCGAGAAAACTGAACTCGACATCAACAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031974 GO:0035821 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043902 GO:0043903 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044788 GO:0044794 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0051702 GO:0051704 GO:0051817 GO:0051851 GO:0065007 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05164 map04141 map05164

Pfam Domains

Protein Families

DnaJ TPR_16 TPR_2 TPR_8

Protein Analysis

200

Amino Acids

22.28

Weight (kDa)

5.8

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03160
fragaria_vesca	FvH4_6g15690
malus_domestica	MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica	Prupe.6G238400_v2.0.a1
pyrus_communis	pycom12g11900
rosa_chinensis	RchiOBHm_Chr3g0469391
rosa_laevigata	RLG00000024353
rosa_multiflora	Rmu_sc0013330.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411930
rosa_rugosa	Rorug03G0101400
rosa_samantha	Rh3CG165100 Rh3DG201200
rosa_wichuraiana	Rw3G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	2 cut(s)	128, 165
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	127, 253, 373
AgsI	TTSAA	4 cut(s)	215, 271, 436, 511
AjuI	GAANNNNNNNTTGG	4 cut(s)	161, 193, 326, 358
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	31, 57, 255
ApoI	RAATTY	1 cut(s)	523
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
Asp700I	GAANNNNTTC	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	118, 514
AsuC2I	CCSGG	2 cut(s)	347, 361
AsuHPI	GGTGA	3 cut(s)	124, 154, 557
AsuII	TTCGAA	2 cut(s)	305, 470
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	118, 514
BanII	GRGCYC	1 cut(s)	388
BarI	GAAGNNNNNNTAC	2 cut(s)	299, 331
BccI	CCATC	1 cut(s)	490
BceAI	ACGGC	1 cut(s)	242
BcnI	CCSGG	2 cut(s)	347, 361
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	320, 601
Bme1390I	CCNGG	2 cut(s)	347, 361
Bme18I	GGWCC	2 cut(s)	118, 514
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	118, 514
BmiI	GGNNCC	2 cut(s)	365, 516
BmrFI	CCNGG	2 cut(s)	347, 361
BmsI	GCATC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	2 cut(s)	305, 470
BpuMI	CCSGG	2 cut(s)	347, 361
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 253, 373
Bse118I	RCCGGY	2 cut(s)	59, 262
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	3 cut(s)	127, 253, 373
BseMII	CTCAG	1 cut(s)	401
BshFI	GGCC	3 cut(s)	33, 59, 257
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	60, 263, 347, 360
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	3 cut(s)	127, 253, 373
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	3 cut(s)	33, 59, 257
BsoBI	CYCGRG	1 cut(s)	380
Bsp119I	TTCGAA	2 cut(s)	305, 470
Bsp1286I	GDGCHC	1 cut(s)	388
BspACI	CCGC	2 cut(s)	128, 165
BspANI	GGCC	3 cut(s)	33, 59, 257
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	365, 516
BspT104I	TTCGAA	2 cut(s)	305, 470
BsrFI	RCCGGY	2 cut(s)	59, 262
BssAI	RCCGGY	2 cut(s)	59, 262
BssECI	CCNNGG	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	221, 446
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	2 cut(s)	305, 470
BstC8I	GCNNGC	3 cut(s)	61, 104, 502
BstDEI	CTNAG	2 cut(s)	387, 459
BstEII	GGTNACC	1 cut(s)	130
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 383, 392
BstNSI	RCATGY	2 cut(s)	106, 504
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	2 cut(s)	345, 359
BsuRI	GGCC	3 cut(s)	33, 59, 257
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	3 cut(s)	61, 104, 502
Cfr10I	RCCGGY	2 cut(s)	59, 262
Cfr13I	GGNCC	2 cut(s)	118, 514
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	3 cut(s)	103, 292, 501
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	387, 459
DraIII	CACNNNGTG	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	118, 514
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	514
EcoO65I	GGTNACC	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	106, 295, 504
FaiI	YATR	5 cut(s)	104, 108, 126, 293, 502
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	3 cut(s)	102, 291, 500
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	320, 601
HaeIII	GGCC	3 cut(s)	33, 59, 257
HapII	CCGG	4 cut(s)	60, 263, 347, 360
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	106, 295, 504
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	4 cut(s)	60, 263, 347, 360
HphI	GGTGA	3 cut(s)	124, 154, 557
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	4 cut(s)	44, 486, 522, 558
Hpy188III	TCNNGA	5 cut(s)	7, 25, 271, 389, 406
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	187, 469, 505
HpyCH4III	ACNGT	2 cut(s)	221, 446
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 383, 392
HpyF3I	CTNAG	2 cut(s)	387, 459
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	106, 295, 504
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
LpnPI	CCDG	8 cut(s)	73, 158, 276, 360, 373, 374, 476, 528
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	320, 601
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	130, 337
MboII	GAAGA	2 cut(s)	448, 484
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	2 cut(s)	90, 523
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	8 cut(s)	44, 151, 170, 191, 209, 247, 385, 528
Mph1103I	ATGCAT	1 cut(s)	108
MroNI	GCCGGC	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	4 cut(s)	60, 263, 347, 360
MspR9I	CCNGG	2 cut(s)	347, 361
MwoI	GCNNNNNNNGC	3 cut(s)	356, 383, 392
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	2 cut(s)	347, 361
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	3 cut(s)	106, 295, 504
NlaIV	GGNNCC	2 cut(s)	365, 516
NmuCI	GTSAC	2 cut(s)	130, 337
NsiI	ATGCAT	1 cut(s)	108
NspI	RCATGY	2 cut(s)	106, 504
NspV	TTCGAA	2 cut(s)	305, 470
PaeI	GCATGC	2 cut(s)	106, 504
PdiI	GCCGGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
PspEI	GGTNACC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	365, 516
PspPI	GGNCC	2 cut(s)	118, 514
PspPPI	RGGWCCY	1 cut(s)	514
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	441
Sau96I	GGNCC	2 cut(s)	118, 514
ScrFI	CCNGG	2 cut(s)	347, 361
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	1 cut(s)	127
SfuI	TTCGAA	2 cut(s)	305, 470
SinI	GGWCC	2 cut(s)	118, 514
SmiMI	CAYNNNNRTG	1 cut(s)	74
SphI	GCATGC	2 cut(s)	106, 504
Sse9I	AATT	2 cut(s)	90, 523
SsiI	CCGC	2 cut(s)	128, 165
SspMI	CTAG	2 cut(s)	320, 601
StyD4I	CCNGG	2 cut(s)	345, 359
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	221, 446
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	6 cut(s)	156, 183, 243, 305, 470, 585
TasI	AATT	2 cut(s)	90, 523
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	130, 337
Tsp45I	GTSAC	2 cut(s)	130, 337
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	451
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	118, 514
XagI	CCTNNNNNAGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	2 cut(s)	106, 504
XmnI	GAANNNNTTC	1 cut(s)	311
XspI	CTAG	2 cut(s)	320, 601
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.