Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0016558

Physical Location & Seq

Genomic Coordinates Reverse (-)

19213601 .. 19218055

Gene Structure 4455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1120200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGTTTGGAGTTGCTCATCCGCCATGGATATAGTGGCTTGGAGAGGGCTGATATATGCTGGGTTCTTACTGCATTTCGTGTTCGTCTGCCAGCTCCTCCTTCTTCAACCTCTGGTTTCAGCTCTGGATGGAAAACCGGGTAATGCAGCTGAGTTGTTTGAGAGGGTTTCACAGAGTATAAAGGTGAAGCGTTATAGCGAGGCACTTAATGATCTTAATGCTGCTATAGAGGCGGACCCAGCACTTTCAGAAGCATATTATCATCGGGCATCCATTCTTCGTCAGATATGCAGATATGAGGAATCTGAGAAGAGCTACAAAAAGTTTTTGGAGCTAAAACCACAAGATTCAGTTGTAGAAAAGGAGCTTTCTCAATTGATTCAGGCTCAGAACGCTCTAGATACGGCTGTGACTCTCTTTGAAACAGGCGACTATGCAAAATCTTTGGAATATGTTGAAAAAGTTGTATTGGTTTTCTCTCCAGCATGCCCAAAGGCCAAATTATTGAAGGTGAGATTGTTGCTAGCAACTAAAGATTATTCTAGTGTCATTTCTGAGGCTGGTTACATTCTGAAAGATGAGGATAATCTGGATGCATTTTTACTTCGCGGCCGTGCCTACTACTATTTGGCTGATCATGATGTTGCCCAAAGGCATTACCAAAAGGGTCTCCGTCTAGATCCAGAGCATGGTGAACTGAAGAAAGCGTATTTTGGACTGAAAAACTTACTCAAGAAGACTAAAAGTGCCGAAGATAATGTAAATAAGGGCAAGCTGCGTGTTGCAGTAGAGGACTTTAAGGCAGCCTTAGCGTTGGACCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTGTGTAAAGTTTTGGTCAAGCTTGGCAGGGGAAAGGATGCTTTAAGCAGTTGCAATGAAGCACTTACAATTGATGAGGAACTTCTAGAAGCTTTGGTTCAGAGGGGGGAAGCTAAACTTCTGACAGAGGATTGGGAGGGAGCTGTGGAAGATCTCAAATCAGCAGCTCAACAATCGCCTCAGGATATGAATATTCGAGAAGCATTGATGAGAGCCGAGAAAGCCTTAAAGATGAGCAAACGCAAAGACTGGTACAAGATTTTGGGAGTTTCAAAGACCACATCTATATCTGAGATTAAACGTGCCTACAAGAAGCTCGCTTTGCAGTGGCATCCGGATAAAAATGTCGAGAACAGACAAGAAGCAGAGGACAAGTTCAGAGAAATTGCTGCTGCATACGAGGTTCTTGGTGATGAAGACAAACGTACGAGATATGATAGAGGTGAAGATATTGAAGAAATGGGAATGGGTGGTGGTGGCAGCGGTTTTAACCCTTTTGGTGGTGGTGGTGGTGGTGGTGGACAGCAATTTACTTTCACTTTCGAAGGGGGCTTTCCTGGCGGTGGCGGTGGTGGATTTGACTTCCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031974 GO:0035821 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043902 GO:0043903 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044788 GO:0044794 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0051702 GO:0051704 GO:0051817 GO:0051851 GO:0065007 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05164 map04141 map05164

Pfam Domains

Protein Families

DnaJ TPR_16 TPR_2 TPR_8

Protein Analysis

484

Amino Acids

53.83

Weight (kDa)

6.03

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	369 - 432	7.8e-26	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03160
fragaria_vesca	FvH4_6g15690
malus_domestica	MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica	Prupe.6G238400_v2.0.a1
pyrus_communis	pycom12g11900
rosa_chinensis	RchiOBHm_Chr3g0469391
rosa_laevigata	RLG00000024353
rosa_multiflora	Rmu_sc0013330.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411930
rosa_rugosa	Rorug03G0101400
rosa_samantha	Rh3CG165100 Rh3DG201200
rosa_wichuraiana	Rw3G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccII	CGCG	1 cut(s)	609
AccIII	TCCGGA	1 cut(s)	1192
AciI	CCGC	6 cut(s)	21, 233, 609, 1341, 1419, 1425
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	719
AfaI	GTAC	3 cut(s)	843, 1112, 1285
AfiI	CCNNNNNNNGG	3 cut(s)	689, 1358, 1421
AgsI	TTSAA	6 cut(s)	107, 422, 458, 508, 1131, 1313
AjnI	CCWGG	1 cut(s)	1414
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	1 cut(s)	674
Aor13HI	TCCGGA	1 cut(s)	1192
AoxI	GGCC	2 cut(s)	495, 610
ApeKI	GCWGC	8 cut(s)	146, 221, 775, 803, 1022, 1247, 1250, 1338
AspS9I	GGNCC	2 cut(s)	235, 817
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	5 cut(s)	196, 523, 704, 1280, 1313
AsuII	TTCGAA	1 cut(s)	1401
AsuNHI	GCTAGC	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	235, 817
AxyI	CCTNAGG	1 cut(s)	1038
BaeI	ACNNNNGTAYC	2 cut(s)	393, 426
BbsI	GAAGAC	2 cut(s)	743, 1281
BbvI	GCAGC	8 cut(s)	158, 208, 762, 815, 1034, 1234, 1237, 1350
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	2 cut(s)	420, 597
BciT130I	CCWGG	1 cut(s)	1416
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	5 cut(s)	398, 524, 543, 677, 944
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	1009
BisI	GCNGC	9 cut(s)	147, 222, 610, 776, 804, 1023, 1248, 1251, 1339
BlsI	GCNGC	9 cut(s)	148, 223, 611, 777, 805, 1024, 1249, 1252, 1340
Bme1390I	CCNGG	2 cut(s)	138, 1416
Bme18I	GGWCC	2 cut(s)	235, 817
BmgT120I	GGNCC	2 cut(s)	235, 817
BmiI	GGNNCC	2 cut(s)	237, 819
BmrFI	CCNGG	2 cut(s)	138, 1416
BmsI	GCATC	4 cut(s)	278, 583, 886, 1198
BmtI	GCTAGC	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	743, 1281
BpmI	CTGGAG	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	808
Bpu14I	TTCGAA	1 cut(s)	1401
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	1192
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 1358, 1421
Bse1I	ACTGG	2 cut(s)	1112, 1444
Bse21I	CCTNAGG	1 cut(s)	1038
Bse3DI	GCAATG	1 cut(s)	919
BseAI	TCCGGA	1 cut(s)	1192
BseBI	CCWGG	1 cut(s)	1416
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	6 cut(s)	17, 133, 269, 598, 901, 1189
BseLI	CCNNNNNNNGG	3 cut(s)	689, 1358, 1421
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	6 cut(s)	141, 297, 401, 546, 1052, 1140
BseNI	ACTGG	2 cut(s)	1112, 1444
BseRI	GAGGAG	1 cut(s)	86
BseX3I	CGGCCG	1 cut(s)	610
BseXI	GCAGC	8 cut(s)	158, 208, 762, 815, 1034, 1234, 1237, 1350
BseYI	CCCAGC	2 cut(s)	59, 238
Bsh1236I	CGCG	1 cut(s)	609
Bsh1285I	CGRYCG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	497, 612
BsiEI	CGRYCG	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	137, 1193
BsiWI	CGTACG	1 cut(s)	1283
BslI	CCNNNNNNNGG	3 cut(s)	689, 1358, 1421
BsmAI	GTCTC	1 cut(s)	674
BsnI	GGCC	2 cut(s)	497, 612
Bso31I	GGTCTC	1 cut(s)	674
Bsp119I	TTCGAA	1 cut(s)	1401
Bsp13I	TCCGGA	1 cut(s)	1192
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	211, 634, 679, 1009
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	6 cut(s)	21, 233, 609, 1341, 1419, 1425
BspANI	GGCC	2 cut(s)	497, 612
BspCNI	CTCAG	6 cut(s)	142, 298, 400, 547, 1051, 1141
BspEI	TCCGGA	1 cut(s)	1192
BspFNI	CGCG	1 cut(s)	609
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	237, 819
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	1 cut(s)	674
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	1401
BspTNI	GGTCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	919
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	2 cut(s)	1112, 1444
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	211, 634, 679, 1009
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	1416
Bst6I	CTCTTC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	1401
BstC8I	GCNNGC	5 cut(s)	92, 487, 525, 773, 1176
BstDEI	CTNAG	7 cut(s)	150, 306, 387, 555, 808, 1038, 1149
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	6 cut(s)	17, 133, 269, 598, 901, 1189
BstFNI	CGCG	1 cut(s)	609
BstKTI	GATC	4 cut(s)	214, 637, 682, 1012
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	4 cut(s)	211, 634, 679, 1009
BstMCI	CGRYCG	1 cut(s)	613
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 239, 392, 809, 1079, 1180, 1416
BstNI	CCWGG	1 cut(s)	1416
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	136, 1414
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	8 cut(s)	158, 208, 762, 815, 1034, 1234, 1237, 1350
BstV2I	GAAGAC	2 cut(s)	743, 1281
BstX2I	RGATCY	2 cut(s)	679, 1009
BstYI	RGATCY	2 cut(s)	679, 1009
BstZI	CGGCCG	1 cut(s)	610
Bsu36I	CCTNAGG	1 cut(s)	1038
BsuRI	GGCC	2 cut(s)	497, 612
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	6 cut(s)	17, 133, 269, 598, 901, 1189
BtsI	GCAGTG	1 cut(s)	1190
BtsIMutI	CAGTG	1 cut(s)	1190
Cac8I	GCNNGC	5 cut(s)	92, 487, 525, 773, 1176
CciI	TCATGA	1 cut(s)	637
Cfr13I	GGNCC	2 cut(s)	235, 817
Csp6I	GTAC	3 cut(s)	842, 1111, 1284
CviAII	CATG	4 cut(s)	25, 486, 638, 689
CviQI	GTAC	3 cut(s)	842, 1111, 1284
DdeI	CTNAG	7 cut(s)	150, 306, 387, 555, 808, 1038, 1149
DpnI	GATC	4 cut(s)	213, 636, 681, 1011
DpnII	GATC	4 cut(s)	211, 634, 679, 1009
EaeI	YGGCCR	1 cut(s)	610
EagI	CGGCCG	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	2 cut(s)	10, 248
EclXI	CGGCCG	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	674
Eco47I	GGWCC	2 cut(s)	235, 817
Eco52I	CGGCCG	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	719
Eco81I	CCTNAGG	1 cut(s)	1038
EcoRII	CCWGG	1 cut(s)	1414
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	4 cut(s)	28, 489, 641, 692
FalI	AAGNNNNNCTT	4 cut(s)	791, 823, 960, 992
FatI	CATG	4 cut(s)	24, 485, 637, 688
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	9 cut(s)	147, 222, 610, 776, 804, 1023, 1248, 1251, 1339
FokI	GGATG	6 cut(s)	4, 140, 256, 605, 908, 1176
Fsp4HI	GCNGC	9 cut(s)	147, 222, 610, 776, 804, 1023, 1248, 1251, 1339
FspBI	CTAG	5 cut(s)	398, 524, 543, 677, 944
GluI	GCNGC	9 cut(s)	147, 222, 610, 776, 804, 1023, 1248, 1251, 1339
GsaI	CCCAGC	2 cut(s)	63, 242
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	497, 612
HapII	CCGG	2 cut(s)	137, 1193
Hin1II	CATG	4 cut(s)	28, 489, 641, 692
HindIII	AAGCTT	2 cut(s)	878, 948
HinfI	GANTC	4 cut(s)	302, 347, 379, 412
HpaII	CCGG	2 cut(s)	137, 1193
HphI	GGTGA	5 cut(s)	196, 523, 704, 1280, 1313
Hpy166II	GTNNAC	2 cut(s)	695, 1379
Hpy8I	GTNNAC	2 cut(s)	695, 1379
HpyAV	CCTTC	3 cut(s)	110, 502, 1397
HpyCH4IV	ACGT	2 cut(s)	1159, 1282
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 239, 392, 809, 1079, 1180, 1416
HpyF3I	CTNAG	7 cut(s)	150, 306, 387, 555, 808, 1038, 1149
HpySE526I	ACGT	2 cut(s)	1159, 1282
Hsp92II	CATG	4 cut(s)	28, 489, 641, 692
Kpn2I	TCCGGA	1 cut(s)	1192
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	4 cut(s)	211, 634, 679, 1009
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	4 cut(s)	99, 331, 364, 998
Lsp1109I	GCAGC	8 cut(s)	158, 208, 762, 815, 1034, 1234, 1237, 1350
LweI	GCATC	4 cut(s)	278, 583, 886, 1198
MaeI	CTAG	5 cut(s)	398, 524, 543, 677, 944
MaeII	ACGT	2 cut(s)	1159, 1282
MaeIII	GTNAC	2 cut(s)	409, 563
MalI	GATC	4 cut(s)	213, 636, 681, 1011
MboI	GATC	4 cut(s)	211, 634, 679, 1009
MfeI	CAATTG	2 cut(s)	374, 927
MflI	RGATCY	2 cut(s)	679, 1009
MluCI	AATT	5 cut(s)	374, 500, 927, 1242, 1385
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	1 cut(s)	795
Mph1103I	ATGCAT	1 cut(s)	598
MroI	TCCGGA	1 cut(s)	1192
MseI	TTAA	7 cut(s)	207, 216, 798, 902, 1085, 1155, 1347
MspA1I	CMGCKG	2 cut(s)	149, 1341
MspI	CCGG	2 cut(s)	137, 1193
MspR9I	CCNGG	2 cut(s)	138, 1416
MunI	CAATTG	2 cut(s)	374, 927
MvaI	CCWGG	1 cut(s)	1416
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	7 cut(s)	230, 239, 392, 809, 1079, 1180, 1416
NciI	CCSGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	211, 634, 679, 1009
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	4 cut(s)	28, 489, 641, 692
NlaIV	GGNNCC	2 cut(s)	237, 819
NmeAIII	GCCGAG	1 cut(s)	1099
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	489
NspV	TTCGAA	1 cut(s)	1401
PaeI	GCATGC	1 cut(s)	489
PagI	TCATGA	1 cut(s)	637
PciSI	GCTCTTC	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	302, 347, 379
Pfl23II	CGTACG	1 cut(s)	1283
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	9 cut(s)	148, 223, 611, 777, 805, 1024, 1249, 1252, 1340
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	1414
PspFI	CCCAGC	2 cut(s)	59, 238
PspGI	CCWGG	1 cut(s)	1414
PspLI	CGTACG	1 cut(s)	1283
PspN4I	GGNNCC	2 cut(s)	237, 819
PspPI	GGNCC	2 cut(s)	235, 817
PsuI	RGATCY	2 cut(s)	679, 1009
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	843, 1112, 1285
RsaNI	GTAC	3 cut(s)	842, 1111, 1284
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	7 cut(s)	207, 216, 798, 902, 1085, 1155, 1347
SatI	GCNGC	9 cut(s)	147, 222, 610, 776, 804, 1023, 1248, 1251, 1339
Sau3AI	GATC	4 cut(s)	211, 634, 679, 1009
Sau96I	GGNCC	2 cut(s)	235, 817
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	138, 1416
SfaNI	GCATC	4 cut(s)	278, 583, 886, 1198
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	1401
SinI	GGWCC	2 cut(s)	235, 817
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	5 cut(s)	374, 500, 927, 1242, 1385
SsiI	CCGC	6 cut(s)	21, 233, 609, 1341, 1419, 1425
SspI	AATATT	1 cut(s)	1051
SspMI	CTAG	5 cut(s)	398, 524, 543, 677, 944
StyD4I	CCNGG	2 cut(s)	136, 1414
StyI	CCWWGG	1 cut(s)	24
TaiI	ACGT	2 cut(s)	1162, 1285
TaqI	TCGA	3 cut(s)	1054, 1206, 1401
TasI	AATT	5 cut(s)	374, 500, 927, 1242, 1385
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	3 cut(s)	302, 347, 379
Tru1I	TTAA	7 cut(s)	207, 216, 798, 902, 1085, 1155, 1347
Tru9I	TTAA	7 cut(s)	207, 216, 798, 902, 1085, 1155, 1347
TscAI	CASTG	1 cut(s)	1190
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	8 cut(s)	146, 221, 775, 803, 1022, 1247, 1250, 1338
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	839, 930, 1061, 1287
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	1190
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	2 cut(s)	235, 817
XbaI	TCTAGA	3 cut(s)	397, 676, 943
XceI	RCATGY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	5 cut(s)	398, 524, 543, 677, 944
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.