FvH4_6g15690

DnaJ homolog subfamily C member 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016558
Physical Location & Seq
Forward (+)
9789415 .. 9794547
5133 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15690.t1

Sequence Viewer

Length: 1458 bp
ATGATTCGGTGTTCCTCATTCGCCATGGACCTCTTGGCCTGTAGAGGTCTGCTCTACACAGTGTTCATACTGCATTTCGTGTTCCTCTGTCAGCTTCTTCTTCTTCAACCTCTGGTGTCTGCTTTAGATGGCAAACCAGGTAATGCGGCTGAGTTGTTAGAGAGGGTTTCACAGAGTGTAAAGGTGAAGAGATACAGTGAGGCACTTAATGATCTTAATGCTGCCATAGAGGCAGACCCAACACTTTCAGAAGCATATTATCATCGTGCGTCTGTTCTTCGCCAGATATGCAGATATGAGGAATCAGAGAATAGCTACAAGAAGTTCTTGGAGTTGAAACCCCGAGATTCAGTTGCAGAGAAGGAGCTTTCTCAATTGAATCAGGCTAAGAGTGCTCTGGATACTGCTTTGACTCTCTTTGAATCAAGTGACTTTGCAAAATCTTTGGAATATGTCGAAAAAGTTGTTCTTGTTTTCTCTCCAGCATGTTCAAAGGCCAAAATCCTGAGGGTGAAACTGTTGTTAGCATCTAAAGACTATTCTGGTGCCATTGCGGAGGCTGGGTTCATTCTCAAAGAAGATGAAGATAATCTGGATGCATTATTACTTCGTGGCCGTGCTTACTATTATTTAGCTGATCACGATGTTGCTCAAAGGCATTACCAAAAGGGTCTCCGCCTAGATCCAGAGCATGGGGAACTAAAGAAAGCGTACTTTGGATTGAAGAATTTGCTCAAAAAGACAAAAAGTGCCGAAGATAATGAAAAGAAGGGAAGGCTGCGAGTTGCAGTTGAGGATTTTAAGGCAGCCCTAGCAATGGACCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTGTGTAAACTCTTGGTCAAGCTCGGCAGGGGAAAAGATGCTCTAAGTAGTTGCAATGAAGCACTTAGTATTGACGAGGAGCTTCTTGAAGCCTTAGTTCAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGAGGGAGCTGTAGAAGATCTAAAATCAGCAGCTCAAAAATCACCTCAGGATATGAATATTCGAGAAACATACATGAGAGCCGAGAAAGCCTTGAAGATGAGTAAACGGAAAGACTGGTACAAGATTTTGGGAGTTTCAAAGACTTCAAGTATATCTGAGATTAAGCGTGCCTACAAGAAACTTGCTTTGCAGTGGCATCCAGATAAAAACGTTGAAAATAGAGAAGAAGCAGAGGAGAAATTTCGAGAAATTGCCGCTGCATACGAGGTTCTTGGTGATGAAGAAAAACGTACCAAGTATGATAGAGGTGAAGATATTGAAGAGATGGGGATGGGCGGCGGCGGCGGTGGTGGTTTTAATCCTTTCCATGGTGGCGGTGGACAGCAATATACTTTCACTTTCGAAGGTGGCTTTCCTGGGGGCGGCGGTGGATTTCCTGGTGGATTTGATTTCCAGTTTTGA

Protein Analysis

486

Amino Acids

54.22

Weight (kDa)

6.2

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 370 - 433 8.6e-27 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03160
fragaria_vesca FvH4_6g15690
malus_domestica MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica Prupe.6G238400_v2.0.a1
pyrus_communis pycom12g11900
rosa_chinensis RchiOBHm_Chr3g0469391
rosa_laevigata RLG00000024353
rosa_multiflora Rmu_sc0013330.1_g000002
rosa_roxburghii Rroxscaffold_6G00411930
rosa_rugosa Rorug03G0101400
rosa_samantha Rh3CG165100 Rh3DG201200
rosa_wichuraiana Rw3G014180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 692
AclI AACGTT 1 cut(s) 1206
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 1 cut(s) 613
AcsI RAATTY 2 cut(s) 727, 1235
AdeI CACNNNGTG 1 cut(s) 176
AfaI GTAC 4 cut(s) 713, 846, 1115, 1288
AfiI CCNNNNNNNGG 4 cut(s) 692, 817, 1364, 1418
AjnI CCWGG 3 cut(s) 136, 1411, 1432
AloI GAACNNNNNNTCC 2 cut(s) 548, 580
AluBI AGCT 9 cut(s) 94, 315, 367, 635, 883, 943, 974, 1004, 1028
AluI AGCT 9 cut(s) 94, 315, 367, 635, 883, 943, 974, 1004, 1028
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 677
AlwI GGATC 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 3 cut(s) 36, 495, 613
ApeKI GCWGC 5 cut(s) 221, 778, 806, 1025, 1253
ApoI RAATTY 2 cut(s) 727, 1235
AspS9I GGNCC 2 cut(s) 28, 820
AsuHPI GGTGA 6 cut(s) 196, 523, 980, 1029, 1283, 1316
AsuII TTCGAA 1 cut(s) 1398
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 2 cut(s) 28, 820
AxyI CCTNAGG 2 cut(s) 506, 1041
BanI GGYRCC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 5 cut(s) 208, 765, 818, 1037, 1240
BccI CCATC 3 cut(s) 122, 1315, 1321
BceAI ACGGC 1 cut(s) 600
BciT130I CCWGG 3 cut(s) 138, 1413, 1434
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 677
BfaI CTAG 2 cut(s) 680, 812
BfmI CTRYAG 2 cut(s) 40, 1005
BfuI GTATCC 1 cut(s) 394
BglI GCCNNNNNGGC 1 cut(s) 230
BglII AGATCT 1 cut(s) 1012
Bme1390I CCNGG 3 cut(s) 138, 1413, 1434
Bme18I GGWCC 2 cut(s) 28, 820
BmeT110I CYCGRG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 28, 820
BmiI GGNNCC 2 cut(s) 547, 822
BmrFI CCNGG 3 cut(s) 138, 1413, 1434
BmsI GCATC 4 cut(s) 536, 586, 889, 1201
BplI GAGNNNNNCTC 2 cut(s) 36, 68
BpmI CTGGAG 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 1398
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 3 cut(s) 24, 1363, 1412
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 4 cut(s) 692, 817, 1364, 1418
Bse1I ACTGG 2 cut(s) 1115, 1450
Bse21I CCTNAGG 2 cut(s) 506, 1041
Bse3DI GCAATG 3 cut(s) 549, 822, 922
BseBI CCWGG 3 cut(s) 138, 1413, 1434
BseDI CCNNGG 3 cut(s) 24, 1363, 1412
BseGI GGATG 3 cut(s) 601, 1192, 1332
BseLI CCNNNNNNNGG 4 cut(s) 692, 817, 1364, 1418
BseMI GCAATG 3 cut(s) 549, 822, 922
BseMII CTCAG 4 cut(s) 141, 497, 1055, 1143
BseNI ACTGG 2 cut(s) 1115, 1450
BseRI GAGGAG 2 cut(s) 953, 1244
BseXI GCAGC 5 cut(s) 208, 765, 818, 1037, 1240
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 3 cut(s) 38, 497, 615
BshNI GGYRCC 1 cut(s) 545
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 342
BslI CCNNNNNNNGG 4 cut(s) 692, 817, 1364, 1418
BsmAI GTCTC 1 cut(s) 677
BsnI GGCC 3 cut(s) 38, 497, 615
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 342
Bsp119I TTCGAA 1 cut(s) 1398
Bsp1286I GDGCHC 1 cut(s) 397
Bsp1407I TGTACA 1 cut(s) 844
Bsp143I GATC 4 cut(s) 211, 637, 682, 1012
Bsp19I CCATGG 2 cut(s) 24, 1363
BspANI GGCC 3 cut(s) 38, 497, 615
BspCNI CTCAG 4 cut(s) 142, 498, 1054, 1144
BspLI GGNNCC 2 cut(s) 547, 822
BspPI GGATC 1 cut(s) 677
BspT104I TTCGAA 1 cut(s) 1398
BspT107I GGYRCC 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 677
BsrDI GCAATG 3 cut(s) 549, 822, 922
BsrGI TGTACA 1 cut(s) 844
BsrI ACTGG 2 cut(s) 1115, 1450
BssECI CCNNGG 3 cut(s) 24, 1363, 1412
BssMI GATC 4 cut(s) 211, 637, 682, 1012
BssT1I CCWWGG 2 cut(s) 24, 1363
Bst2UI CCWGG 3 cut(s) 138, 1413, 1434
Bst4CI ACNGT 3 cut(s) 61, 197, 519
Bst6I CTCTTC 2 cut(s) 182, 1311
BstAUI TGTACA 1 cut(s) 844
BstBI TTCGAA 1 cut(s) 1398
BstC8I GCNNGC 1 cut(s) 1164
BstDEI CTNAG 8 cut(s) 150, 387, 506, 905, 926, 955, 1041, 1152
BstDSI CCRYGG 2 cut(s) 24, 1363
BstF5I GGATG 3 cut(s) 601, 1192, 1332
BstKTI GATC 4 cut(s) 214, 640, 685, 1015
BstMAI GTCTC 1 cut(s) 677
BstMBI GATC 4 cut(s) 211, 637, 682, 1012
BstMWI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1338
BstNI CCWGG 3 cut(s) 138, 1413, 1434
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 136, 1411, 1432
BstSFI CTRYAG 2 cut(s) 40, 1005
BstV1I GCAGC 5 cut(s) 208, 765, 818, 1037, 1240
BstX2I RGATCY 2 cut(s) 682, 1012
BstYI RGATCY 2 cut(s) 682, 1012
Bsu36I CCTNAGG 2 cut(s) 506, 1041
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 3 cut(s) 38, 497, 615
BtgI CCRYGG 2 cut(s) 24, 1363
BtsCI GGATG 3 cut(s) 601, 1192, 1332
BtsI GCAGTG 1 cut(s) 1193
BtsIMutI CAGTG 3 cut(s) 66, 202, 1193
Cac8I GCNNGC 1 cut(s) 1164
Cfr13I GGNCC 2 cut(s) 28, 820
CseI GACGC 1 cut(s) 258
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 4 cut(s) 712, 845, 1114, 1287
CviAII CATG 5 cut(s) 25, 486, 692, 1069, 1364
CviQI GTAC 4 cut(s) 712, 845, 1114, 1287
DdeI CTNAG 8 cut(s) 150, 387, 506, 905, 926, 955, 1041, 1152
DpnI GATC 4 cut(s) 213, 639, 684, 1014
DpnII GATC 4 cut(s) 211, 637, 682, 1012
DraIII CACNNNGTG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 2 cut(s) 182, 1311
EarI CTCTTC 2 cut(s) 182, 1311
EciI GGCGGA 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 24, 1363
Eco31I GGTCTC 1 cut(s) 677
Eco47I GGWCC 2 cut(s) 28, 820
Eco81I CCTNAGG 2 cut(s) 506, 1041
Eco88I CYCGRG 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 136, 1411, 1432
EcoT14I CCWWGG 2 cut(s) 24, 1363
EcoT22I ATGCAT 1 cut(s) 601
ErhI CCWWGG 2 cut(s) 24, 1363
FaeI CATG 5 cut(s) 28, 489, 695, 1072, 1367
FalI AAGNNNNNCTT 6 cut(s) 311, 343, 453, 485, 963, 995
FatI CATG 5 cut(s) 24, 485, 691, 1068, 1363
FbaI TGATCA 1 cut(s) 637
FokI GGATG 3 cut(s) 608, 1179, 1339
FspBI CTAG 2 cut(s) 680, 812
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 3 cut(s) 38, 497, 615
HgaI GACGC 1 cut(s) 258
Hin1II CATG 5 cut(s) 28, 489, 695, 1072, 1367
HinfI GANTC 6 cut(s) 4, 302, 347, 379, 412, 422
HphI GGTGA 6 cut(s) 196, 523, 980, 1029, 1283, 1316
Hpy166II GTNNAC 3 cut(s) 869, 1100, 1376
Hpy188I TCNGA 5 cut(s) 250, 307, 963, 984, 1153
Hpy8I GTNNAC 3 cut(s) 869, 1100, 1376
HpyAV CCTTC 4 cut(s) 355, 763, 768, 1394
HpyCH4III ACNGT 3 cut(s) 61, 197, 519
HpyCH4IV ACGT 2 cut(s) 1206, 1285
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1338
HpyF3I CTNAG 8 cut(s) 150, 387, 506, 905, 926, 955, 1041, 1152
HpySE526I ACGT 2 cut(s) 1206, 1285
Hsp92II CATG 5 cut(s) 28, 489, 695, 1072, 1367
Ksp22I TGATCA 1 cut(s) 637
Kzo9I GATC 4 cut(s) 211, 637, 682, 1012
LmnI GCTCC 3 cut(s) 364, 940, 1001
Lsp1109I GCAGC 5 cut(s) 208, 765, 818, 1037, 1240
LweI GCATC 4 cut(s) 536, 586, 889, 1201
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 2 cut(s) 680, 812
MaeII ACGT 2 cut(s) 1206, 1285
MaeIII GTNAC 1 cut(s) 428
MalI GATC 4 cut(s) 213, 639, 684, 1014
MboI GATC 4 cut(s) 211, 637, 682, 1012
MfeI CAATTG 1 cut(s) 374
MflI RGATCY 2 cut(s) 682, 1012
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 4 cut(s) 374, 727, 1235, 1245
MlyI GAGTC 1 cut(s) 406
Mph1103I ATGCAT 1 cut(s) 601
MseI TTAA 5 cut(s) 207, 216, 801, 1158, 1353
MspA1I CMGCKG 1 cut(s) 1253
MspR9I CCNGG 3 cut(s) 138, 1413, 1434
MunI CAATTG 1 cut(s) 374
MvaI CCWGG 3 cut(s) 138, 1413, 1434
MwoI GCNNNNNNNGC 6 cut(s) 230, 288, 392, 812, 1082, 1338
NcoI CCATGG 2 cut(s) 24, 1363
NdeII GATC 4 cut(s) 211, 637, 682, 1012
NlaIII CATG 5 cut(s) 28, 489, 695, 1072, 1367
NlaIV GGNNCC 2 cut(s) 547, 822
NmeAIII GCCGAG 2 cut(s) 864, 1102
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 601
NspI RCATGY 1 cut(s) 489
NspV TTCGAA 1 cut(s) 1398
PfeI GAWTC 5 cut(s) 4, 302, 347, 379, 422
PflMI CCANNNNNTGG 1 cut(s) 692
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Psp1406I AACGTT 1 cut(s) 1206
Psp6I CCWGG 3 cut(s) 136, 1411, 1432
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 3 cut(s) 136, 1411, 1432
PspN4I GGNNCC 2 cut(s) 547, 822
PspPI GGNCC 2 cut(s) 28, 820
PsuI RGATCY 2 cut(s) 682, 1012
RsaI GTAC 4 cut(s) 713, 846, 1115, 1288
RsaNI GTAC 4 cut(s) 712, 845, 1114, 1287
SaqAI TTAA 5 cut(s) 207, 216, 801, 1158, 1353
Sau3AI GATC 4 cut(s) 211, 637, 682, 1012
Sau96I GGNCC 2 cut(s) 28, 820
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 3 cut(s) 138, 1413, 1434
SduI GDGCHC 1 cut(s) 397
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 4 cut(s) 536, 586, 889, 1201
SfcI CTRYAG 2 cut(s) 40, 1005
SfuI TTCGAA 1 cut(s) 1398
SinI GGWCC 2 cut(s) 28, 820
Sse9I AATT 4 cut(s) 374, 727, 1235, 1245
SspI AATATT 1 cut(s) 1054
SspMI CTAG 2 cut(s) 680, 812
StyD4I CCNGG 3 cut(s) 136, 1411, 1432
StyI CCWWGG 2 cut(s) 24, 1363
TaaI ACNGT 3 cut(s) 61, 197, 519
TaiI ACGT 2 cut(s) 1209, 1288
TaqI TCGA 4 cut(s) 456, 1057, 1240, 1398
TasI AATT 4 cut(s) 374, 727, 1235, 1245
TatI WGTACW 1 cut(s) 844
TauI GCSGC 6 cut(s) 149, 1253, 1335, 1338, 1341, 1422
TfiI GAWTC 5 cut(s) 4, 302, 347, 379, 422
Tru1I TTAA 5 cut(s) 207, 216, 801, 1158, 1353
Tru9I TTAA 5 cut(s) 207, 216, 801, 1158, 1353
TscAI CASTG 3 cut(s) 66, 202, 1193
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 5 cut(s) 221, 778, 806, 1025, 1253
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 8 cut(s) 55, 556, 597, 777, 842, 933, 1064, 1290
TspGWI ACGGA 1 cut(s) 1117
TspRI CASTG 3 cut(s) 66, 202, 1193
Van91I CCANNNNNTGG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 28, 820
XapI RAATTY 2 cut(s) 727, 1235
XceI RCATGY 1 cut(s) 489
XcmI CCANNNNNNNNNTGG 2 cut(s) 31, 1370
XspI CTAG 2 cut(s) 680, 812
Zsp2I ATGCAT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.