Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016558

Physical Location & Seq

Genomic Coordinates Reverse (-)

23812658 .. 23817344

Gene Structure 4687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G238400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGTTTGGAGTTGCTCATTCGCCATGGATATGGTGGCCTGGAGAGGCTTGATGTACACAGGGTTCATACTGCATTTCGTCTTTGTCTGCCAGCTCCTCCTTCTTCAACCTCTGGTTTCAGCTCTAGATGGCAAACCAGGCAATGCAGCTGAATTGTTTGAGAGGGTTTCACAGAGTATAAAGGTGAAGCGATATAGTGAGGCACTTAATGATCTTAATGCTGCTATAGAGGCAGATCCAACACTTTCAGAAGCATATTACCATCGTGCATCCGTTCTTCGCCATATATGCAGATATGAGGACTCAGAGAAGAGCTACAAAAAGTTTTTGGAGCTAAAACCACGGGAATCAGTTGCAGAAAAGGAGCTTTCGCAATTAATTCAGTCTCAGAATGCTCTGGAGACAGCTTTGACCCTCTCTGAATCAGGCGACTATGCGAAATCTTTGGAGTACGTTGAAAAAGTTGTACTGGTTTTCTCCCCAGCATGCTCAAAGGCCAAACTGCTGAAGGTGAGATTGTTGTTAGCAACGAAAGACCATTCTGGTGTCATTGCTGAGGCTGGGTACATTCTCAAAGAAGATGAGGATAATCTGGAGGCATTATTACTCCGTGGCCGTGCCTACTACTATTTAGCTGATCATGATGTTGCTCAGAGGCATTACCAAAAGGGTCTCCGTCTAGATCCAGAGCATGTTGAACTGAAGAAAGCGTATTTCGGACTGAAAAACTTACTCAAGAAGACTAAAAGTGCAGAGGATAATGTAAATAAGGGCAAGCTGCGGCTTGCAGTAGAGGAATATAAGGCAGCCTTAGCTTTGGACCCTAATCATCTTGCGCATAATGTACATCTTCATCTTGGCTTGTGTAAAGCCTTAGTCAAGCTTGGCAGAGGAAAGGATGCTTTAAGCAGTTGCAATGAAGCACTTAAAATTGATGAGGAGCTTCTTGAAGCTTTAGTACAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGAGGGAGCTGTGGAAGATCTCAAATCAGCAGCTCAGCGATCACCTCAGGATATGAATATTCGAGAAGCATTGATGAAGGCTGAGAAAGCCTTAAAGATGAGCAAACGTAAAGACTGGTACAAGATTTTGGGAGTTTCAAAGACTGCATCTATTTCAGAGATTAAAAAAGCCTACAAGAAGCTTGCTTTGCAGTGGCATCCAGATAAAAATGTTGAGAATAGACAAGAAGCAGAGGAAAAGTTCAGAGAAATTGCTGCTGCATATGAGGTTCTCGGAGATGAAGACAAACGTACAAAATATGATAGAGGTGAAGATATTGAAGATATGGGAATGGGGGGCGGCGGCGGCGGTTTTAACCCTTTTGGTGGCGGCTCACAACAATTTACATTTACTTTCGAAGGGGGCTTCCCTGGCGGTGGTGGTGGTGGATTTGGAGGAGGCTTTCCTGGTGGATTTGACTTCCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031974 GO:0035821 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043902 GO:0043903 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044788 GO:0044794 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0051702 GO:0051704 GO:0051817 GO:0051851 GO:0065007 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05164 map04141 map05164

Pfam Domains

Protein Families

DnaJ TPR_16 TPR_2 TPR_8

Protein Analysis

489

Amino Acids

54.42

Weight (kDa)

6.36

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03160
fragaria_vesca	FvH4_6g15690
malus_domestica	MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica	Prupe.6G238400_v2.0.a1
pyrus_communis	pycom12g11900
rosa_chinensis	RchiOBHm_Chr3g0469391
rosa_laevigata	RLG00000024353
rosa_multiflora	Rmu_sc0013330.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411930
rosa_rugosa	Rorug03G0101400
rosa_samantha	Rh3CG165100 Rh3DG201200
rosa_wichuraiana	Rw3G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	837
AciI	CCGC	7 cut(s)	781, 1335, 1338, 1341, 1344, 1365, 1410
AclWI	GGATC	2 cut(s)	230, 677
AcoI	YGGCCR	1 cut(s)	613
AcuI	CTGAAG	2 cut(s)	527, 722
AfaI	GTAC	8 cut(s)	56, 452, 468, 566, 846, 960, 1115, 1288
AfiI	CCNNNNNNNGG	2 cut(s)	1361, 1412
AgsI	TTSAA	6 cut(s)	107, 458, 698, 950, 1134, 1316
AjnI	CCWGG	4 cut(s)	38, 136, 1405, 1441
Alw26I	GTCTC	3 cut(s)	390, 395, 677
AlwI	GGATC	2 cut(s)	230, 677
AoxI	GGCC	3 cut(s)	36, 495, 613
ApeKI	GCWGC	7 cut(s)	146, 221, 778, 806, 1025, 1250, 1253
AseI	ATTAAT	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	838
AspS9I	GGNCC	1 cut(s)	820
AsuHPI	GGTGA	5 cut(s)	196, 523, 980, 1029, 1316
AsuII	TTCGAA	1 cut(s)	1392
AvaII	GGWCC	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	1041
BarI	GAAGNNNNNNTAC	2 cut(s)	942, 974
BbsI	GAAGAC	2 cut(s)	746, 1284
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	7 cut(s)	158, 208, 765, 818, 1037, 1237, 1240
BccI	CCATC	2 cut(s)	122, 270
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	4 cut(s)	40, 138, 1407, 1443
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	390, 395, 677
BfaI	CTAG	2 cut(s)	125, 680
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	1012
BlpI	GCTNAGC	1 cut(s)	1029
Bme1390I	CCNGG	4 cut(s)	40, 138, 1407, 1443
Bme18I	GGWCC	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	820
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	4 cut(s)	40, 138, 1407, 1443
BmsI	GCATC	4 cut(s)	278, 889, 1151, 1201
BpiI	GAAGAC	2 cut(s)	746, 1284
BpmI	CTGGAG	3 cut(s)	61, 419, 614
Bpu10I	CCTNAGC	2 cut(s)	555, 811
Bpu1102I	GCTNAGC	1 cut(s)	1029
Bpu14I	TTCGAA	1 cut(s)	1392
BpuEI	CTTGAG	1 cut(s)	719
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	4 cut(s)	24, 341, 610, 1405
Bsc4I	CCNNNNNNNGG	2 cut(s)	1361, 1412
Bse1I	ACTGG	3 cut(s)	474, 1115, 1459
Bse21I	CCTNAGG	1 cut(s)	1041
Bse3DI	GCAATG	3 cut(s)	148, 549, 922
BseBI	CCWGG	4 cut(s)	40, 138, 1407, 1443
BseDI	CCNNGG	4 cut(s)	24, 341, 610, 1405
BseGI	GGATG	3 cut(s)	269, 904, 1192
BseLI	CCNNNNNNNGG	2 cut(s)	1361, 1412
BseMI	GCAATG	3 cut(s)	148, 549, 922
BseMII	CTCAG	7 cut(s)	318, 401, 546, 665, 1043, 1055, 1068
BseNI	ACTGG	3 cut(s)	474, 1115, 1459
BseRI	GAGGAG	3 cut(s)	86, 953, 1446
BseXI	GCAGC	7 cut(s)	158, 208, 765, 818, 1037, 1237, 1240
BseYI	CCCAGC	2 cut(s)	481, 560
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	3 cut(s)	38, 497, 615
BslI	CCNNNNNNNGG	2 cut(s)	1361, 1412
BsmAI	GTCTC	3 cut(s)	390, 395, 677
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	38, 497, 615
Bso31I	GGTCTC	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	1392
Bsp1407I	TGTACA	2 cut(s)	54, 844
Bsp143I	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
Bsp1720I	GCTNAGC	1 cut(s)	1029
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	7 cut(s)	781, 1335, 1338, 1341, 1344, 1365, 1410
BspANI	GGCC	3 cut(s)	38, 497, 615
BspCNI	CTCAG	7 cut(s)	317, 400, 547, 664, 1042, 1054, 1069
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	822
BspPI	GGATC	2 cut(s)	230, 677
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	1392
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	3 cut(s)	148, 549, 922
BsrGI	TGTACA	2 cut(s)	54, 844
BsrI	ACTGG	3 cut(s)	474, 1115, 1459
BssECI	CCNNGG	4 cut(s)	24, 341, 610, 1405
BssMI	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	4 cut(s)	40, 138, 1407, 1443
Bst6I	CTCTTC	1 cut(s)	305
BstAUI	TGTACA	2 cut(s)	54, 844
BstBI	TTCGAA	1 cut(s)	1392
BstC8I	GCNNGC	5 cut(s)	92, 487, 776, 786, 1179
BstDEI	CTNAG	9 cut(s)	304, 387, 555, 651, 811, 874, 1029, 1041, 1077
BstDSI	CCRYGG	3 cut(s)	24, 341, 610
BstF5I	GGATG	3 cut(s)	269, 904, 1192
BstHHI	GCGC	1 cut(s)	838
BstKTI	GATC	6 cut(s)	214, 238, 640, 685, 1015, 1037
BstMAI	GTCTC	3 cut(s)	390, 395, 677
BstMBI	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
BstMWI	GCNNNNNNNGC	8 cut(s)	138, 230, 288, 812, 1082, 1183, 1341, 1407
BstNI	CCWGG	4 cut(s)	40, 138, 1407, 1443
BstNSI	RCATGY	2 cut(s)	489, 695
BstSCI	CCNGG	4 cut(s)	38, 136, 1405, 1441
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	7 cut(s)	158, 208, 765, 818, 1037, 1237, 1240
BstV2I	GAAGAC	2 cut(s)	746, 1284
BstX2I	RGATCY	3 cut(s)	235, 682, 1012
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	3 cut(s)	235, 682, 1012
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuRI	GGCC	3 cut(s)	38, 497, 615
BtgI	CCRYGG	3 cut(s)	24, 341, 610
BtsCI	GGATG	3 cut(s)	269, 904, 1192
BtsI	GCAGTG	1 cut(s)	1193
BtsIMutI	CAGTG	1 cut(s)	1193
Cac8I	GCNNGC	5 cut(s)	92, 487, 776, 786, 1179
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	838
Cfr13I	GGNCC	1 cut(s)	820
Csp6I	GTAC	8 cut(s)	55, 451, 467, 565, 845, 959, 1114, 1287
CviAII	CATG	4 cut(s)	25, 486, 641, 692
CviQI	GTAC	8 cut(s)	55, 451, 467, 565, 845, 959, 1114, 1287
DdeI	CTNAG	9 cut(s)	304, 387, 555, 651, 811, 874, 1029, 1041, 1077
DpnI	GATC	6 cut(s)	213, 237, 639, 684, 1014, 1036
DpnII	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	820
Eco57I	CTGAAG	2 cut(s)	527, 722
Eco81I	CCTNAGG	1 cut(s)	1041
EcoRII	CCWGG	4 cut(s)	38, 136, 1405, 1441
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	4 cut(s)	28, 489, 644, 695
FalI	AAGNNNNNCTT	4 cut(s)	794, 826, 963, 995
FatI	CATG	4 cut(s)	24, 485, 640, 691
FauNDI	CATATG	1 cut(s)	1258
FbaI	TGATCA	1 cut(s)	637
FokI	GGATG	3 cut(s)	256, 911, 1179
FspBI	CTAG	2 cut(s)	125, 680
FspI	TGCGCA	1 cut(s)	837
GlaI	GCGC	1 cut(s)	837
GsaI	CCCAGC	2 cut(s)	485, 564
GsuI	CTGGAG	3 cut(s)	61, 419, 614
HaeIII	GGCC	3 cut(s)	38, 497, 615
HhaI	GCGC	1 cut(s)	838
Hin1II	CATG	4 cut(s)	28, 489, 644, 695
Hin6I	GCGC	1 cut(s)	836
HinP1I	GCGC	1 cut(s)	836
HindIII	AAGCTT	3 cut(s)	881, 951, 1175
HinfI	GANTC	3 cut(s)	302, 347, 422
HphI	GGTGA	5 cut(s)	196, 523, 980, 1029, 1316
Hpy166II	GTNNAC	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	57
HpyAV	CCTTC	4 cut(s)	110, 502, 1066, 1388
HpyCH4IV	ACGT	3 cut(s)	453, 1102, 1285
HpyF10VI	GCNNNNNNNGC	8 cut(s)	138, 230, 288, 812, 1082, 1183, 1341, 1407
HpyF3I	CTNAG	9 cut(s)	304, 387, 555, 651, 811, 874, 1029, 1041, 1077
HpySE526I	ACGT	3 cut(s)	453, 1102, 1285
Hsp92II	CATG	4 cut(s)	28, 489, 644, 695
HspAI	GCGC	1 cut(s)	836
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	5 cut(s)	99, 331, 364, 940, 1001
Lsp1109I	GCAGC	7 cut(s)	158, 208, 765, 818, 1037, 1237, 1240
LweI	GCATC	4 cut(s)	278, 889, 1151, 1201
MaeI	CTAG	2 cut(s)	125, 680
MaeII	ACGT	3 cut(s)	453, 1102, 1285
MalI	GATC	6 cut(s)	213, 237, 639, 684, 1014, 1036
MboI	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
MflI	RGATCY	3 cut(s)	235, 682, 1012
MluCI	AATT	6 cut(s)	152, 374, 378, 930, 1245, 1376
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	263
MseI	TTAA	8 cut(s)	207, 216, 377, 905, 927, 1088, 1158, 1350
MslI	CAYNNNNRTG	2 cut(s)	29, 543
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	4 cut(s)	40, 138, 1407, 1443
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	4 cut(s)	40, 138, 1407, 1443
MwoI	GCNNNNNNNGC	8 cut(s)	138, 230, 288, 812, 1082, 1183, 1341, 1407
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	1258
NdeII	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
NlaIII	CATG	4 cut(s)	28, 489, 644, 695
NlaIV	GGNNCC	1 cut(s)	822
NsbI	TGCGCA	1 cut(s)	837
NspI	RCATGY	2 cut(s)	489, 695
NspV	TTCGAA	1 cut(s)	1392
PaeI	GCATGC	1 cut(s)	489
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	305
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	347, 422
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PshBI	ATTAAT	1 cut(s)	377
Psp6I	CCWGG	4 cut(s)	38, 136, 1405, 1441
PspFI	CCCAGC	2 cut(s)	481, 560
PspGI	CCWGG	4 cut(s)	38, 136, 1405, 1441
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	1 cut(s)	820
PsrI	GAACNNNNNNTAC	2 cut(s)	47, 79
PsuI	RGATCY	3 cut(s)	235, 682, 1012
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	8 cut(s)	56, 452, 468, 566, 846, 960, 1115, 1288
RsaNI	GTAC	8 cut(s)	55, 451, 467, 565, 845, 959, 1114, 1287
RseI	CAYNNNNRTG	2 cut(s)	29, 543
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	8 cut(s)	207, 216, 377, 905, 927, 1088, 1158, 1350
Sau3AI	GATC	6 cut(s)	211, 235, 637, 682, 1012, 1034
Sau96I	GGNCC	1 cut(s)	820
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	4 cut(s)	40, 138, 1407, 1443
SfaNI	GCATC	4 cut(s)	278, 889, 1151, 1201
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	1392
SinI	GGWCC	1 cut(s)	820
SmiMI	CAYNNNNRTG	2 cut(s)	29, 543
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	6 cut(s)	152, 374, 378, 930, 1245, 1376
SsiI	CCGC	7 cut(s)	781, 1335, 1338, 1341, 1344, 1365, 1410
SspI	AATATT	1 cut(s)	1054
SspMI	CTAG	2 cut(s)	125, 680
StyD4I	CCNGG	4 cut(s)	38, 136, 1405, 1441
StyI	CCWWGG	1 cut(s)	24
TaiI	ACGT	3 cut(s)	456, 1105, 1288
TaqI	TCGA	2 cut(s)	1057, 1392
TasI	AATT	6 cut(s)	152, 374, 378, 930, 1245, 1376
TatI	WGTACW	4 cut(s)	54, 466, 844, 958
TauI	GCSGC	5 cut(s)	784, 1338, 1341, 1344, 1368
TfiI	GAWTC	2 cut(s)	347, 422
Tru1I	TTAA	8 cut(s)	207, 216, 377, 905, 927, 1088, 1158, 1350
Tru9I	TTAA	8 cut(s)	207, 216, 377, 905, 927, 1088, 1158, 1350
TscAI	CASTG	1 cut(s)	1193
TseI	GCWGC	7 cut(s)	146, 221, 778, 806, 1025, 1250, 1253
TspDTI	ATGAA	6 cut(s)	55, 842, 933, 1064, 1085, 1290
TspGWI	ACGGA	3 cut(s)	262, 599, 665
TspRI	CASTG	1 cut(s)	1193
VpaK11BI	GGWCC	1 cut(s)	820
VspI	ATTAAT	1 cut(s)	377
XbaI	TCTAGA	2 cut(s)	124, 679
XceI	RCATGY	2 cut(s)	489, 695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	2 cut(s)	125, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.