Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0016558

Physical Location & Seq

Genomic Coordinates Reverse (-)

18502863 .. 18507961

Gene Structure 5099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1100100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGATTTGGAGTTGCTCATCCGCCATGGATATGGTGGCTTGGAGAGGGCTGATATATACTGGGTTCTTACTGCATTTCGTGTTCGTCTGCCAGCTCCTCCTTCTGCAACCTCTGGTTTCAGCTCTGGATGGAAAACCTGGTAATACGGCTGAGTTGCTTGAGAGGGTTTCACAGAGTATAAAGGTGAAGCGTTATAGCGAGGCACTTAATGATCTTAATGCTGCTATAGAGGCAGACCCAGCACTTTCAGAAGCATATTATCATCGGGCATCCGTTCTTCGTCAAATATGCAGATATGAGGAATCAGAGAAGAGCTACAAAAAGTTTTTGGAGCTAAAACCACGAGAGTCGGTTGCAGAAAAGGAGCTTTCTCAATTGATTCAGGCTCAGAATGCTCTAGATACGGCTATGACTCTCTTTGAATCAGGCAACTATGCAAAATCTTCGGAATATGTTGAAAAAGTAGTACTGGTTTTCTCTCCTGCATGCTCAAAGGCCAAATTGCTGAAGGTGAGATTGTTGTTAGCAACTAAAGACTATTCTAGTGTCATTTCTGAGGCTGCTTACATTCTCAAAGAAGATGAGGATAATTTGGAGGCATTATTACTCCGGGGCCGTGCCTACTACTATTTAGCTGATCATGATGTTGCTCAAAGGCATTACCAAAAGGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAGAAAGCGTATTTTGGACTGAAGAACTTACTCAAGAAGACTAAAAGTGCCGAAGATAATGTAAATAAGGGCAAGCTGCGTGTTGCAGTAGAGGACTTCAAGGCAGCCCTAGCGTTGGACCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTGTGTAAAGCTTTGGTCAAGCTTGGGAGGGGAAAGGATGCTTTAAGCAGTTGCAATGAAGCACTTACAATTGATGAGGAGCTTCTAGAAGCTTTAGTTCAGAGGGGTGAAGCTAAACTTCTGACAGAGGATTGGGATGGAGCTGTGGAAGATCTCAAATCAGCAGCTCAACAATCGCCTCAGGATATGAATATTCGAGAAGCATTGATGAGAGCCGAGAAAGCCTTAAAGATGAGCAAGCGCAAAGACTGGTACAAGATTTTGGGAGTATCAAAAACTGCATCCATATCTGAGATTAAACGTGCCTACAAGAAGCTTGCTTTACAGTGGCATCCGGATAAAAATGTTGAGAACAGACAAGAAGCAGAGGACAAGTTCAGAGAAATTGCTGCTGCATACGAGGTTCTCGGCGACGAAGACAAACGTACGAGGTATGATAGAGGTGAAGATATTGAAGAAATGGGAATGGGTGGTGGTGGCGGTGGTTTCAACCCTTTTGGTGGTGGTGGCGGTGGTGGTGGTGGTGGACGGCAATTTACATTCACCTTCGAAGGGGGGTTTCCTGGCGGTGGCGGTGGCGGTGGTGGATTTGGAGGAGGCTTTCCTGGTGGATTTGACTTCCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0005886 GO:0008150 GO:0012505 GO:0016020 GO:0031974 GO:0035821 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043902 GO:0043903 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044788 GO:0044794 GO:0048518 GO:0048524 GO:0050789 GO:0050792 GO:0051702 GO:0051704 GO:0051817 GO:0051851 GO:0065007 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04141 ko05164 map04141 map05164

Pfam Domains

Protein Families

DnaJ TPR_16 TPR_2 TPR_8

Protein Analysis

497

Amino Acids

54.85

Weight (kDa)

6.27

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	370 - 433	1.7e-26	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03160
fragaria_vesca	FvH4_6g15690
malus_domestica	MD04G1100100.v1.1 MD12G1120200.v1.1
prunus_persica	Prupe.6G238400_v2.0.a1
pyrus_communis	pycom12g11900
rosa_chinensis	RchiOBHm_Chr3g0469391
rosa_laevigata	RLG00000024353
rosa_multiflora	Rmu_sc0013330.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411930
rosa_rugosa	Rorug03G0101400
rosa_samantha	Rh3CG165100 Rh3DG201200
rosa_wichuraiana	Rw3G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1195
AciI	CCGC	7 cut(s)	21, 676, 1341, 1371, 1428, 1434, 1440
AclWI	GGATC	1 cut(s)	677
AcuI	CTGAAG	3 cut(s)	527, 722, 743
AfaI	GTAC	4 cut(s)	468, 846, 1115, 1288
AfiI	CCNNNNNNNGG	4 cut(s)	817, 1361, 1413, 1430
AgsI	TTSAA	5 cut(s)	422, 458, 802, 1316, 1351
AjnI	CCWGG	3 cut(s)	136, 1423, 1465
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	1 cut(s)	677
Aor13HI	TCCGGA	1 cut(s)	1195
AoxI	GGCC	2 cut(s)	495, 613
ApeKI	GCWGC	7 cut(s)	221, 560, 778, 806, 1025, 1250, 1253
AspLEI	GCGC	1 cut(s)	1104
AspS9I	GGNCC	2 cut(s)	613, 820
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	5 cut(s)	196, 523, 980, 1316, 1396
AsuII	TTCGAA	1 cut(s)	1410
AvaII	GGWCC	1 cut(s)	820
AxyI	CCTNAGG	1 cut(s)	1041
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	746, 1284
BbvI	GCAGC	7 cut(s)	208, 547, 765, 818, 1037, 1237, 1240
BccI	CCATC	2 cut(s)	122, 992
BceAI	ACGGC	4 cut(s)	162, 420, 600, 1406
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	3 cut(s)	138, 1425, 1467
BclI	TGATCA	1 cut(s)	637
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	5 cut(s)	398, 543, 680, 812, 947
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	7 cut(s)	222, 561, 779, 807, 1026, 1251, 1254
BlsI	GCNGC	7 cut(s)	223, 562, 780, 808, 1027, 1252, 1255
BmcAI	AGTACT	1 cut(s)	468
Bme1390I	CCNGG	4 cut(s)	138, 611, 1425, 1467
Bme18I	GGWCC	1 cut(s)	820
BmgT120I	GGNCC	2 cut(s)	613, 820
BmiI	GGNNCC	2 cut(s)	614, 822
BmrFI	CCNGG	4 cut(s)	138, 611, 1425, 1467
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	4 cut(s)	278, 889, 1151, 1201
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	746, 1284
Bpu14I	TTCGAA	1 cut(s)	1410
BpuEI	CTTGAG	2 cut(s)	179, 719
BpuMI	CCSGG	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	2 cut(s)	24, 610
BsaWI	WCCGGW	1 cut(s)	1195
Bsc4I	CCNNNNNNNGG	4 cut(s)	817, 1361, 1413, 1430
Bse1I	ACTGG	4 cut(s)	64, 474, 1115, 1483
Bse21I	CCTNAGG	1 cut(s)	1041
Bse3DI	GCAATG	1 cut(s)	922
BseAI	TCCGGA	1 cut(s)	1195
BseBI	CCWGG	3 cut(s)	138, 1425, 1467
BseDI	CCNNGG	2 cut(s)	24, 610
BseGI	GGATG	7 cut(s)	17, 133, 269, 904, 1003, 1142, 1192
BseLI	CCNNNNNNNGG	4 cut(s)	817, 1361, 1413, 1430
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	5 cut(s)	141, 401, 546, 1055, 1143
BseNI	ACTGG	4 cut(s)	64, 474, 1115, 1483
BseRI	GAGGAG	3 cut(s)	86, 953, 1470
BseXI	GCAGC	7 cut(s)	208, 547, 765, 818, 1037, 1237, 1240
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	2 cut(s)	497, 615
BsiSI	CCGG	2 cut(s)	610, 1196
BsiWI	CGTACG	1 cut(s)	1286
BslI	CCNNNNNNNGG	4 cut(s)	817, 1361, 1413, 1430
BsmAI	GTCTC	1 cut(s)	677
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	497, 615
Bso31I	GGTCTC	1 cut(s)	677
Bsp119I	TTCGAA	1 cut(s)	1410
Bsp13I	TCCGGA	1 cut(s)	1195
Bsp1407I	TGTACA	1 cut(s)	844
Bsp143I	GATC	4 cut(s)	211, 637, 682, 1012
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	7 cut(s)	21, 676, 1341, 1371, 1428, 1434, 1440
BspANI	GGCC	2 cut(s)	497, 615
BspCNI	CTCAG	5 cut(s)	142, 400, 547, 1054, 1144
BspEI	TCCGGA	1 cut(s)	1195
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	2 cut(s)	614, 822
BspPI	GGATC	1 cut(s)	677
BspQI	GCTCTTC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	1410
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	922
BsrGI	TGTACA	1 cut(s)	844
BsrI	ACTGG	4 cut(s)	64, 474, 1115, 1483
BssECI	CCNNGG	2 cut(s)	24, 610
BssMI	GATC	4 cut(s)	211, 637, 682, 1012
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	138, 1425, 1467
Bst4CI	ACNGT	1 cut(s)	1188
Bst6I	CTCTTC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	1410
BstC8I	GCNNGC	5 cut(s)	92, 487, 776, 1100, 1179
BstDEI	CTNAG	5 cut(s)	150, 387, 555, 1041, 1152
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	7 cut(s)	17, 133, 269, 904, 1003, 1142, 1192
BstHHI	GCGC	1 cut(s)	1104
BstKTI	GATC	4 cut(s)	214, 640, 685, 1015
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	4 cut(s)	211, 637, 682, 1012
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 239, 392, 812, 1082
BstNI	CCWGG	3 cut(s)	138, 1425, 1467
BstNSI	RCATGY	1 cut(s)	489
BstSCI	CCNGG	4 cut(s)	136, 609, 1423, 1465
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	7 cut(s)	208, 547, 765, 818, 1037, 1237, 1240
BstV2I	GAAGAC	2 cut(s)	746, 1284
BstX2I	RGATCY	2 cut(s)	682, 1012
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	2 cut(s)	682, 1012
Bsu36I	CCTNAGG	1 cut(s)	1041
BsuRI	GGCC	2 cut(s)	497, 615
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	7 cut(s)	17, 133, 269, 904, 1003, 1142, 1192
BtsIMutI	CAGTG	1 cut(s)	1193
Cac8I	GCNNGC	5 cut(s)	92, 487, 776, 1100, 1179
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	1104
Cfr13I	GGNCC	2 cut(s)	613, 820
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	467, 845, 1114, 1287
CviAII	CATG	3 cut(s)	25, 486, 641
CviQI	GTAC	4 cut(s)	467, 845, 1114, 1287
DdeI	CTNAG	5 cut(s)	150, 387, 555, 1041, 1152
DpnI	GATC	4 cut(s)	213, 639, 684, 1014
DpnII	GATC	4 cut(s)	211, 637, 682, 1012
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	2 cut(s)	10, 665
Eco130I	CCWWGG	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	820
Eco57I	CTGAAG	3 cut(s)	527, 722, 743
Eco81I	CCTNAGG	1 cut(s)	1041
EcoRII	CCWGG	3 cut(s)	136, 1423, 1465
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	28, 489, 644
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FatI	CATG	3 cut(s)	24, 485, 640
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	7 cut(s)	222, 561, 779, 807, 1026, 1251, 1254
FokI	GGATG	7 cut(s)	4, 140, 256, 911, 1010, 1129, 1179
Fsp4HI	GCNGC	7 cut(s)	222, 561, 779, 807, 1026, 1251, 1254
FspBI	CTAG	5 cut(s)	398, 543, 680, 812, 947
GlaI	GCGC	1 cut(s)	1103
GluI	GCNGC	7 cut(s)	222, 561, 779, 807, 1026, 1251, 1254
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	497, 615
HapII	CCGG	2 cut(s)	610, 1196
HhaI	GCGC	1 cut(s)	1104
Hin1II	CATG	3 cut(s)	28, 489, 644
Hin6I	GCGC	1 cut(s)	1102
HinP1I	GCGC	1 cut(s)	1102
HindIII	AAGCTT	4 cut(s)	870, 881, 951, 1175
HinfI	GANTC	5 cut(s)	302, 347, 379, 412, 422
HpaII	CCGG	2 cut(s)	610, 1196
HphI	GGTGA	5 cut(s)	196, 523, 980, 1316, 1396
Hpy166II	GTNNAC	2 cut(s)	698, 1388
Hpy188I	TCNGA	9 cut(s)	250, 307, 390, 448, 556, 963, 984, 1153, 1241
Hpy188III	TCNNGA	9 cut(s)	125, 398, 641, 686, 736, 947, 1043, 1058, 1196
Hpy8I	GTNNAC	2 cut(s)	698, 1388
Hpy99I	CGWCG	1 cut(s)	1277
HpyAV	CCTTC	4 cut(s)	110, 502, 1406, 1417
HpyCH4III	ACNGT	1 cut(s)	1188
HpyCH4IV	ACGT	2 cut(s)	1162, 1285
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 239, 392, 812, 1082
HpyF3I	CTNAG	5 cut(s)	150, 387, 555, 1041, 1152
HpySE526I	ACGT	2 cut(s)	1162, 1285
Hsp92II	CATG	3 cut(s)	28, 489, 644
HspAI	GCGC	1 cut(s)	1102
Kpn2I	TCCGGA	1 cut(s)	1195
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	4 cut(s)	211, 637, 682, 1012
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	5 cut(s)	99, 331, 364, 940, 1001
Lsp1109I	GCAGC	7 cut(s)	208, 547, 765, 818, 1037, 1237, 1240
LweI	GCATC	4 cut(s)	278, 889, 1151, 1201
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	5 cut(s)	398, 543, 680, 812, 947
MaeII	ACGT	2 cut(s)	1162, 1285
MalI	GATC	4 cut(s)	213, 639, 684, 1014
MboI	GATC	4 cut(s)	211, 637, 682, 1012
MfeI	CAATTG	2 cut(s)	374, 930
MflI	RGATCY	2 cut(s)	682, 1012
MluCI	AATT	6 cut(s)	374, 500, 589, 930, 1245, 1394
MlyI	GAGTC	2 cut(s)	356, 406
MmeI	TCCRAC	1 cut(s)	798
MroI	TCCGGA	1 cut(s)	1195
MseI	TTAA	5 cut(s)	207, 216, 905, 1088, 1158
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	2 cut(s)	610, 1196
MspR9I	CCNGG	4 cut(s)	138, 611, 1425, 1467
MunI	CAATTG	2 cut(s)	374, 930
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	3 cut(s)	138, 1425, 1467
MwoI	GCNNNNNNNGC	5 cut(s)	230, 239, 392, 812, 1082
NciI	CCSGG	1 cut(s)	611
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	211, 637, 682, 1012
NlaIII	CATG	3 cut(s)	28, 489, 644
NlaIV	GGNNCC	2 cut(s)	614, 822
NmeAIII	GCCGAG	2 cut(s)	1102, 1248
NspI	RCATGY	1 cut(s)	489
NspV	TTCGAA	1 cut(s)	1410
PaeI	GCATGC	1 cut(s)	489
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	305
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	302, 379, 422
Pfl23II	CGTACG	1 cut(s)	1286
PkrI	GCNGC	7 cut(s)	223, 562, 780, 808, 1027, 1252, 1255
PleI	GAGTC	2 cut(s)	355, 406
PpsI	GAGTC	2 cut(s)	355, 406
Psp6I	CCWGG	3 cut(s)	136, 1423, 1465
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	3 cut(s)	136, 1423, 1465
PspLI	CGTACG	1 cut(s)	1286
PspN4I	GGNNCC	2 cut(s)	614, 822
PspPI	GGNCC	2 cut(s)	613, 820
PsuI	RGATCY	2 cut(s)	682, 1012
RsaI	GTAC	4 cut(s)	468, 846, 1115, 1288
RsaNI	GTAC	4 cut(s)	467, 845, 1114, 1287
RseI	CAYNNNNRTG	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	5 cut(s)	207, 216, 905, 1088, 1158
SatI	GCNGC	7 cut(s)	222, 561, 779, 807, 1026, 1251, 1254
Sau3AI	GATC	4 cut(s)	211, 637, 682, 1012
Sau96I	GGNCC	2 cut(s)	613, 820
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	2 cut(s)	356, 406
ScrFI	CCNGG	4 cut(s)	138, 611, 1425, 1467
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	4 cut(s)	278, 889, 1151, 1201
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	1410
SinI	GGWCC	1 cut(s)	820
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	158, 734
SmoI	CTYRAG	2 cut(s)	158, 734
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	6 cut(s)	374, 500, 589, 930, 1245, 1394
SsiI	CCGC	7 cut(s)	21, 676, 1341, 1371, 1428, 1434, 1440
SspI	AATATT	1 cut(s)	1054
SspMI	CTAG	5 cut(s)	398, 543, 680, 812, 947
StyD4I	CCNGG	4 cut(s)	136, 609, 1423, 1465
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	1188
TaiI	ACGT	2 cut(s)	1165, 1288
TaqI	TCGA	2 cut(s)	1057, 1410
TasI	AATT	6 cut(s)	374, 500, 589, 930, 1245, 1394
TatI	WGTACW	2 cut(s)	466, 844
TfiI	GAWTC	3 cut(s)	302, 379, 422
Tru1I	TTAA	5 cut(s)	207, 216, 905, 1088, 1158
Tru9I	TTAA	5 cut(s)	207, 216, 905, 1088, 1158
TscAI	CASTG	1 cut(s)	1193
TseI	GCWGC	7 cut(s)	221, 560, 778, 806, 1025, 1250, 1253
TspDTI	ATGAA	3 cut(s)	842, 933, 1064
TspGWI	ACGGA	1 cut(s)	262
TspRI	CASTG	1 cut(s)	1193
VpaK11BI	GGWCC	1 cut(s)	820
XbaI	TCTAGA	2 cut(s)	397, 946
XceI	RCATGY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	5 cut(s)	398, 543, 680, 812, 947
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.