AT5G03370

Belongs to the acylphosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015379
Physical Location & Seq
Reverse (-)
825537 .. 827502
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03370.1

Sequence Viewer

Length: 516 bp
ATGGCCTCAATTGTCGGAATTCGAACAAGATTCCTGAGTTTCGGGAAGCTTTCACAAATCTCTTCTTCACTGTTGAGAATACACAATCCTCGTAATCATCAGAATCCTCTTATTCTCCCTCTTCCTTGTTTCTCTGCCGCTCCTAGTCGTCATCGTCCTCTGATTTGGCTTCGCTCATCTCCGCCTGTGTCCTCGATGACCACTCAGGCTGAATCTGGGTCTTCCCAGCAATCCGATTCTTCCAAAACGGTGAGAGTGGTGATAAAGGGAAGAGTACAGGGAGTGTGCTACAGAAACTGGACTGTTGAGAACGCTGAGCAGCTGGGGATAAAGGGATGGGTTAGGAACCGCAGGGATGGTTCAGTGGAAGCACTCTTTTCAGGACCACCTGAAGCTGTTGATGAGATGCATCAGAGGTGTCGCCGTGGTCCTCCTGCAGCCATGGTTACCGGTTTGGAGGCTTTCCCTTCCACTGAAGAACCTGGATCAAGTTTTGAATACAGATCAACCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00620 ko00627 ko01120 map00620 map00627 map01120
Pfam Domains
Protein Families
Acylphosphatase

Protein Analysis

171

Amino Acids

18.89

Weight (kDa)

10.26

Isoelectric Point (pI)

62.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acylphosphatase PF00708 85 - 166 3.9e-23 Acylphosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03370
fragaria_vesca FvH4_6g16390
malus_domestica MD04G1093600.v1.1
prunus_persica Prupe.6G232200_v2.0.a1
pyrus_communis pycom04g08880
rosa_chinensis RchiOBHm_Chr3g0470251
rosa_laevigata RLG00000024286
rosa_multiflora Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii Rroxscaffold_6G00411030
rosa_rugosa Rorug03G0107700
rosa_samantha Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana Rw3G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AciI CCGC 3 cut(s) 138, 182, 349
AclWI GGATC 1 cut(s) 493
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 2 cut(s) 411, 495
AfaI GTAC 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 1 cut(s) 497
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 3 cut(s) 49, 322, 395
AluI AGCT 3 cut(s) 49, 322, 395
AlwI GGATC 1 cut(s) 493
AlwNI CAGNNNCTG 1 cut(s) 297
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 319, 437
ApoI RAATTY 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 383, 428
AsuHPI GGTGA 2 cut(s) 262, 271
AsuII TTCGAA 1 cut(s) 22
AvaII GGWCC 2 cut(s) 383, 428
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 331, 449
BccI CCATC 2 cut(s) 330, 350
BceAI ACGGC 1 cut(s) 408
BciT130I CCWGG 1 cut(s) 483
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 289, 435
BisI GCNGC 3 cut(s) 138, 320, 438
BlpI GCTNAGC 1 cut(s) 315
BlsI GCNGC 3 cut(s) 139, 321, 439
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 383, 428
BmgT120I GGNCC 2 cut(s) 383, 428
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 396, 418
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 424, 441
BsaWI WCCGGW 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 424, 441
BseGI GGATG 2 cut(s) 341, 361
BseMII CTCAG 3 cut(s) 26, 218, 306
BseNI ACTGG 1 cut(s) 302
BseXI GCAGC 2 cut(s) 331, 449
BseYI CCCAGC 2 cut(s) 225, 322
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 449
BsiSI CCGG 1 cut(s) 450
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 22
Bsp143I GATC 2 cut(s) 485, 503
Bsp1720I GCTNAGC 1 cut(s) 315
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 3 cut(s) 138, 182, 349
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 27, 217, 307
BspLI GGNNCC 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 439
BspPI GGATC 1 cut(s) 493
BspT104I TTCGAA 1 cut(s) 22
BsrBI CCGCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 424, 441
BssMI GATC 2 cut(s) 485, 503
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 72, 250, 304, 511
Bst6I CTCTTC 3 cut(s) 67, 126, 265
BstBI TTCGAA 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 35, 204, 315
BstDSI CCRYGG 2 cut(s) 424, 441
BstEII GGTNACC 1 cut(s) 445
BstF5I GGATG 2 cut(s) 341, 361
BstKTI GATC 2 cut(s) 488, 506
BstMBI GATC 2 cut(s) 485, 503
BstNI CCWGG 1 cut(s) 483
BstPI GGTNACC 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 2 cut(s) 289, 435
BstV1I GCAGC 2 cut(s) 331, 449
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 424, 441
BtsCI GGATG 2 cut(s) 341, 361
BtsIMutI CAGTG 3 cut(s) 68, 369, 471
CaiI CAGNNNCTG 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 383, 428
Csp6I GTAC 1 cut(s) 275
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 1 cut(s) 442
CviJI RGCY 8 cut(s) 5, 49, 169, 209, 322, 395, 440, 461
CviKI_1 RGCY 8 cut(s) 5, 49, 169, 209, 322, 395, 440, 461
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 3 cut(s) 35, 204, 315
DpnI GATC 2 cut(s) 487, 505
DpnII GATC 2 cut(s) 485, 503
Eam1104I CTCTTC 3 cut(s) 67, 126, 265
EarI CTCTTC 3 cut(s) 67, 126, 265
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 383, 428
Eco57I CTGAAG 2 cut(s) 411, 495
Eco91I GGTNACC 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 1 cut(s) 445
FaiI YATR 1 cut(s) 443
FatI CATG 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 138, 320, 438
FokI GGATG 2 cut(s) 348, 368
Fsp4HI GCNGC 3 cut(s) 138, 320, 438
FspBI CTAG 1 cut(s) 144
GluI GCNGC 3 cut(s) 138, 320, 438
GsaI CCCAGC 2 cut(s) 229, 326
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 450
Hin1II CATG 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 4 cut(s) 30, 103, 212, 236
HpaII CCGG 1 cut(s) 450
HphI GGTGA 2 cut(s) 262, 271
Hpy188I TCNGA 6 cut(s) 17, 102, 162, 235, 414, 515
Hpy188III TCNNGA 3 cut(s) 34, 43, 381
HpyAV CCTTC 1 cut(s) 477
HpyCH4III ACNGT 4 cut(s) 72, 250, 304, 511
HpyCH4V TGCA 2 cut(s) 409, 437
HpyF3I CTNAG 3 cut(s) 35, 204, 315
Hsp92II CATG 1 cut(s) 445
Kzo9I GATC 2 cut(s) 485, 503
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 331, 449
LweI GCATC 2 cut(s) 396, 418
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 445
MalI GATC 2 cut(s) 487, 505
MbiI CCGCTC 1 cut(s) 140
MboI GATC 2 cut(s) 485, 503
MboII GAAGA 7 cut(s) 54, 57, 113, 213, 231, 282, 488
MfeI CAATTG 1 cut(s) 9
MluCI AATT 2 cut(s) 9, 18
MnlI CCTC 9 cut(s) 16, 99, 117, 129, 168, 202, 408, 441, 451
Mph1103I ATGCAT 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 483
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 483
NcoI CCATGG 1 cut(s) 441
NdeII GATC 2 cut(s) 485, 503
NlaIII CATG 1 cut(s) 445
NlaIV GGNNCC 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 411
NspV TTCGAA 1 cut(s) 22
PfeI GAWTC 4 cut(s) 30, 103, 212, 236
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 3 cut(s) 139, 321, 439
Psp6I CCWGG 1 cut(s) 481
PspEI GGTNACC 1 cut(s) 445
PspFI CCCAGC 2 cut(s) 225, 322
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 383, 428
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SatI GCNGC 3 cut(s) 138, 320, 438
Sau3AI GATC 2 cut(s) 485, 503
Sau96I GGNCC 2 cut(s) 383, 428
ScrFI CCNGG 1 cut(s) 483
SetI ASST 6 cut(s) 51, 324, 391, 397, 419, 484
SfaNI GCATC 2 cut(s) 396, 418
SfcI CTRYAG 2 cut(s) 289, 435
SfuI TTCGAA 1 cut(s) 22
SinI GGWCC 2 cut(s) 383, 428
Sse9I AATT 2 cut(s) 9, 18
SsiI CCGC 3 cut(s) 138, 182, 349
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 4 cut(s) 72, 250, 304, 511
TaqI TCGA 2 cut(s) 22, 194
TasI AATT 2 cut(s) 9, 18
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 4 cut(s) 30, 103, 212, 236
TscAI CASTG 3 cut(s) 75, 369, 478
TseI GCWGC 2 cut(s) 319, 437
TspRI CASTG 3 cut(s) 75, 369, 478
VpaK11BI GGWCC 2 cut(s) 383, 428
XapI RAATTY 1 cut(s) 18
XspI CTAG 1 cut(s) 144
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.