Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015379

Physical Location & Seq

Genomic Coordinates Forward (+)

10997771 .. 10998694

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCATCAGCAATCTCAGGGAGGCTACTGAGATTCCTCACCTCTCGGAGCCACAAACATCCACCACATAAATGGAATCAAATCAATAACTCAGCCAATGCTTCTGTTCCTGCTCTTAGATTCGTCGTCCCCAATCTCCATAATTCTCTCCCTCTTACTCTTCGTCCTCCTCTTTCGCTTTGCCTTCCTCCTCTTCTTCCTCGCCCTCCTCTTTCTTCTCTGCTCGGACCTTGTCCACCTCCTCTTCGACATTCTCTGCCCCTCATGACCACTCCCCAGGCCGCCGCCTCTGATTCCTCCCAGTCGTCCTCCTCCGCCAAAACTGTGAGGTTGGTGATAAAGGGGAGAGTGCAGGGTGTGTTTTACAGGGACTGGACTGTGGGGAATGCAACCGAATTAGGCTTGAAAGGTTGGGTTCGGAACCGGAGAGATGGGTCTGTGGAGACACTGCTTTCTGGGAACCCTGATGCGGTTAAAGAGATGGAGCAGAGGTGTCGCCGCGGCCCTCCATCTGCTGTTGTCACAGGGCTAGAGGTTTTTCCTAGCACTGAGGACCCTGGCACTGGATTCGAGCGCAAACAAACGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 ko00627 ko01120 map00620 map00627 map01120

Pfam Domains

Protein Families

Acylphosphatase

Protein Analysis

197

Amino Acids

21.3

Weight (kDa)

10.83

Isoelectric Point (pI)

58.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03370
fragaria_vesca	FvH4_6g16390
malus_domestica	MD04G1093600.v1.1
prunus_persica	Prupe.6G232200_v2.0.a1
pyrus_communis	pycom04g08880
rosa_chinensis	RchiOBHm_Chr3g0470251
rosa_laevigata	RLG00000024286
rosa_multiflora	Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411030
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana	Rw3G014970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	501
AciI	CCGC	6 cut(s)	282, 285, 315, 470, 499, 501
AfiI	CCNNNNNNNGG	2 cut(s)	469, 563
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	276, 556
Alw26I	GTCTC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	372
AoxI	GGCC	2 cut(s)	279, 502
ArsI	GACNNNNNNTTYG	1 cut(s)	570
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	3 cut(s)	227, 503, 553
AsuHPI	GGTGA	2 cut(s)	31, 346
AvaII	GGWCC	2 cut(s)	227, 553
BccI	CCATC	3 cut(s)	425, 475, 517
BcgI	CGANNNNNNTGC	4 cut(s)	476, 510, 550, 584
BciT130I	CCWGG	2 cut(s)	278, 558
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	2 cut(s)	530, 543
BisI	GCNGC	4 cut(s)	282, 285, 499, 502
BlsI	GCNGC	4 cut(s)	283, 286, 500, 503
Bme1390I	CCNGG	2 cut(s)	278, 558
Bme18I	GGWCC	2 cut(s)	227, 553
BmgT120I	GGNCC	3 cut(s)	227, 503, 553
BmiI	GGNNCC	4 cut(s)	50, 422, 461, 555
BmrFI	CCNGG	2 cut(s)	278, 558
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	14, 457
BmuI	ACTGGG	1 cut(s)	295
BsaJI	CCNNGG	3 cut(s)	276, 499, 556
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 563
Bse1I	ACTGG	3 cut(s)	301, 377, 568
BseBI	CCWGG	2 cut(s)	278, 558
BseDI	CCNNGG	3 cut(s)	276, 499, 556
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	469, 563
BseMII	CTCAG	4 cut(s)	20, 30, 105, 540
BseNI	ACTGG	3 cut(s)	301, 377, 568
BseRI	GAGGAG	5 cut(s)	159, 180, 198, 231, 301
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	281, 504
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	113, 383
BslI	CCNNNNNNNGG	2 cut(s)	469, 563
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	2 cut(s)	113, 383
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	281, 504
BspACI	CCGC	6 cut(s)	282, 285, 315, 470, 499, 501
BspANI	GGCC	2 cut(s)	281, 504
BspCNI	CTCAG	4 cut(s)	21, 29, 104, 541
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	50, 422, 461, 555
BsrI	ACTGG	3 cut(s)	301, 377, 568
BssECI	CCNNGG	3 cut(s)	276, 499, 556
Bst2UI	CCWGG	2 cut(s)	278, 558
Bst4CI	ACNGT	3 cut(s)	325, 379, 586
Bst6I	CTCTTC	3 cut(s)	165, 198, 249
BstDEI	CTNAG	5 cut(s)	16, 29, 91, 116, 549
BstDSI	CCRYGG	1 cut(s)	499
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	576
BstMAI	GTCTC	1 cut(s)	437
BstNI	CCWGG	2 cut(s)	278, 558
BstSCI	CCNGG	2 cut(s)	276, 556
BstUI	CGCG	1 cut(s)	501
BstXI	CCANNNNNNTGG	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	281, 504
BtgI	CCRYGG	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	446, 546, 561
CaiI	CAGNNNCTG	1 cut(s)	372
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	1 cut(s)	576
Cfr13I	GGNCC	3 cut(s)	227, 503, 553
Cfr42I	CCGCGG	1 cut(s)	502
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	7 cut(s)	25, 51, 95, 281, 402, 504, 529
CviKI_1	RGCY	7 cut(s)	25, 51, 95, 281, 402, 504, 529
DdeI	CTNAG	5 cut(s)	16, 29, 91, 116, 549
Eam1104I	CTCTTC	3 cut(s)	165, 198, 249
EarI	CTCTTC	3 cut(s)	165, 198, 249
EciI	GGCGGA	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	227, 553
EcoO109I	RGGNCCY	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	276, 556
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	69, 141, 266
FaqI	GGGAC	2 cut(s)	113, 383
FatI	CATG	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	282, 285, 499, 502
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	4 cut(s)	282, 285, 499, 502
FspBI	CTAG	2 cut(s)	530, 543
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	4 cut(s)	282, 285, 499, 502
HaeIII	GGCC	2 cut(s)	281, 504
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	1 cut(s)	576
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HinfI	GANTC	5 cut(s)	33, 76, 120, 293, 567
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	2 cut(s)	31, 346
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	5 cut(s)	48, 227, 292, 420, 590
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	325, 379, 586
HpyCH4V	TGCA	2 cut(s)	352, 389
HpyF3I	CTNAG	5 cut(s)	16, 29, 91, 116, 549
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	574
KspI	CCGCGG	1 cut(s)	502
LmnI	GCTCC	2 cut(s)	48, 484
LweI	GCATC	2 cut(s)	14, 457
MaeI	CTAG	2 cut(s)	530, 543
MaeIII	GTNAC	1 cut(s)	520
MboII	GAAGA	5 cut(s)	152, 185, 188, 207, 236
MluCI	AATT	2 cut(s)	142, 395
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	501
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	278, 558
Mva1269I	GAATGC	1 cut(s)	391
MvaI	CCWGG	2 cut(s)	278, 558
MvnI	CGCG	1 cut(s)	501
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	4 cut(s)	50, 422, 461, 555
NmuCI	GTSAC	1 cut(s)	520
PagI	TCATGA	1 cut(s)	264
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	5 cut(s)	33, 76, 120, 293, 567
PflFI	GACNNNGTC	1 cut(s)	231
PkrI	GCNGC	4 cut(s)	283, 286, 500, 503
PpuMI	RGGWCCY	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	276, 556
PspGI	CCWGG	2 cut(s)	276, 556
PspN4I	GGNNCC	4 cut(s)	50, 422, 461, 555
PspPI	GGNCC	3 cut(s)	227, 503, 553
PspPPI	RGGWCCY	1 cut(s)	553
PstNI	CAGNNNCTG	1 cut(s)	372
PsyI	GACNNNGTC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	70
SacII	CCGCGG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	4 cut(s)	282, 285, 499, 502
Sau96I	GGNCC	3 cut(s)	227, 503, 553
ScrFI	CCNGG	2 cut(s)	278, 558
SetI	ASST	7 cut(s)	44, 232, 241, 332, 412, 494, 537
SfaNI	GCATC	2 cut(s)	14, 457
Sfr303I	CCGCGG	1 cut(s)	502
SgrBI	CCGCGG	1 cut(s)	502
SinI	GGWCC	2 cut(s)	227, 553
SmiMI	CAYNNNNRTG	1 cut(s)	70
Sse9I	AATT	2 cut(s)	142, 395
SsiI	CCGC	6 cut(s)	282, 285, 315, 470, 499, 501
SspMI	CTAG	2 cut(s)	530, 543
StyD4I	CCNGG	2 cut(s)	276, 556
TaaI	ACNGT	3 cut(s)	325, 379, 586
TaqI	TCGA	2 cut(s)	247, 570
TasI	AATT	2 cut(s)	142, 395
TauI	GCSGC	4 cut(s)	284, 287, 501, 504
TfiI	GAWTC	5 cut(s)	33, 76, 120, 293, 567
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	3 cut(s)	453, 553, 568
TseFI	GTSAC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	520
TspRI	CASTG	3 cut(s)	453, 553, 568
Tth111I	GACNNNGTC	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	227, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XspI	CTAG	2 cut(s)	530, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.