Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011073.1

Orthogroup ID

OG0015379

Physical Location & Seq

Genomic Coordinates Forward (+)

44496 .. 45067

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011073.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgaccaccacacaggccgcctccgaatccccccaatcctccaccaaaacggtgaggcttgtgataaaagggagggttcagggtgtgttttacaggaactggactatagagaatgcaacccaattggggttgaagggttgggtgaggaacaggagagatgggtctgtggagactctgctatctgggaattccgatgcggtccaggaaatggagcagaggtgtcgacgaggtcctccatctgcaatggtcactgggcttgaggttaatcccagcactgatgaccctggttctggatttgagcgcaaacaaacggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00620 ko00627 ko01120 map00620 map00627 map01120

Pfam Domains

Protein Families

Acylphosphatase

Protein Analysis

105

Amino Acids

11.54

Weight (kDa)

9.5

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03370
fragaria_vesca	FvH4_6g16390
malus_domestica	MD04G1093600.v1.1
prunus_persica	Prupe.6G232200_v2.0.a1
pyrus_communis	pycom04g08880
rosa_chinensis	RchiOBHm_Chr3g0470251
rosa_laevigata	RLG00000024286
rosa_multiflora	Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii	Rroxscaffold_6G00411030
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana	Rw3G014970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	2 cut(s)	18, 197
AcsI	RAATTY	1 cut(s)	187
AfiI	CCNNNNNNNGG	3 cut(s)	126, 208, 290
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	201, 283
Alw26I	GTCTC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	199, 230
AsuHPI	GGTGA	2 cut(s)	64, 154
AvaII	GGWCC	2 cut(s)	199, 230
BccI	CCATC	2 cut(s)	152, 244
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	2 cut(s)	203, 285
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	203, 285
Bme18I	GGWCC	2 cut(s)	199, 230
BmgT120I	GGNCC	2 cut(s)	199, 230
BmrFI	CCNGG	2 cut(s)	203, 285
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 208, 290
Bse1I	ACTGG	2 cut(s)	104, 256
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	203, 285
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	3 cut(s)	126, 208, 290
BseMI	GCAATG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	104, 256
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	126, 208, 290
BsmAI	GTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	17
BspACI	CCGC	2 cut(s)	18, 197
BspANI	GGCC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	104, 256
BssECI	CCNNGG	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	203, 285
Bst4CI	ACNGT	2 cut(s)	52, 313
BstHHI	GCGC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	203, 285
BstSCI	CCNGG	2 cut(s)	201, 283
BstSFI	CTRYAG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	249, 273
CaiI	CAGNNNCTG	1 cut(s)	99
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	199, 230
CviJI	RGCY	3 cut(s)	17, 58, 256
CviKI_1	RGCY	3 cut(s)	17, 58, 256
Eco47I	GGWCC	2 cut(s)	199, 230
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	201, 283
FaiI	YATR	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	18
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	26, 172
HphI	GGTGA	2 cut(s)	64, 154
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	25, 193
Hpy188III	TCNNGA	1 cut(s)	291
Hpy8I	GTNNAC	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	2 cut(s)	52, 313
HpyCH4V	TGCA	2 cut(s)	116, 242
HspAI	GCGC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	211
LweI	GCATC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	122
MluCI	AATT	2 cut(s)	122, 187
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	9 cut(s)	31, 48, 49, 66, 138, 210, 221, 243, 253
MseI	TTAA	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	203, 285
MunI	CAATTG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	2 cut(s)	203, 285
NmuCI	GTSAC	1 cut(s)	247
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	201, 283
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	2 cut(s)	201, 283
PspPI	GGNCC	2 cut(s)	199, 230
PspPPI	RGGWCCY	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	199, 230
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	203, 285
SetI	ASST	3 cut(s)	221, 232, 264
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	199, 230
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	122, 187
SsiI	CCGC	2 cut(s)	18, 197
StyD4I	CCNGG	2 cut(s)	201, 283
TaaI	ACNGT	2 cut(s)	52, 313
TaqI	TCGA	1 cut(s)	223
TasI	AATT	2 cut(s)	122, 187
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	256, 280
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspRI	CASTG	2 cut(s)	256, 280
Tth111I	GACNNNGTC	1 cut(s)	228
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	199, 230
XapI	RAATTY	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.