FvH4_6g16390

Belongs to the acylphosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015379
Physical Location & Seq
Reverse (-)
10301913 .. 10302911
999 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16390.t1

Sequence Viewer

Length: 567 bp
ATGGCATCAGCAATCCCACTTAGGCCACTGACATGTCAACACGGAATTAAATTCCTCGCATCTCGGAACAAATGTACCCAAATCAGCAATGCTAGTTCTCCTATTAGATTCATCACCCATTTCACTGGTCCTCACCATCATCGTCTTCATCTTCCTCTTTCGCTTTGCTCTCTTCTTCTTCTACCTCGCCCTGCTCTTTCTCCTCTGCTCAGAACTCGTTCACCTCACTTTCGACCTTCTCTGACCCTCATGACCACCACCCAGGCCGCCTCCGAATCCCCACAATCCTCCACCAAAACGGTGAGGCTTGTGATAAAGGGGAGGGTTCAGGGTGTGTTTTACAGGAACTGGACTATAGAGAATGCAACCCAATTGGGGTTGAAGGGTTGGGTGAGGAACAGGAGAGATGGGTCTGTGGAGACTCTGCTTTCTGGGAATTCCGATGCGGTTCAGGAAATGGAGCAGAGATGTCGGCGTGGTCCTCCTTCTGCAATGGTCACCGGGCTTGAGGTTTATCCTAGTACTGATGACCCTGGTTCTGGATTTGAGCTCAAACAAACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00620 ko00627 ko01120 map00620 map00627 map01120
Pfam Domains
Protein Families
Acylphosphatase

Protein Analysis

189

Amino Acids

20.82

Weight (kDa)

10.61

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acylphosphatase PF00708 102 - 183 2.6e-23 Acylphosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03370
fragaria_vesca FvH4_6g16390
malus_domestica MD04G1093600.v1.1
prunus_persica Prupe.6G232200_v2.0.a1
pyrus_communis pycom04g08880
rosa_chinensis RchiOBHm_Chr3g0470251
rosa_laevigata RLG00000024286
rosa_multiflora Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii Rroxscaffold_6G00411030
rosa_rugosa Rorug03G0107700
rosa_samantha Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana Rw3G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 267, 446
AcsI RAATTY 2 cut(s) 50, 436
AfaI GTAC 2 cut(s) 76, 523
AfiI CCNNNNNNNGG 2 cut(s) 375, 539
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 2 cut(s) 261, 532
AluBI AGCT 1 cut(s) 550
AluI AGCT 1 cut(s) 550
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 348
AoxI GGCC 2 cut(s) 23, 264
ApoI RAATTY 2 cut(s) 50, 436
Asp700I GAANNNNTTC 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 128, 479
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 6 cut(s) 106, 125, 213, 313, 403, 490
AvaII GGWCC 2 cut(s) 128, 479
BaeI ACNNNNGTAYC 2 cut(s) 58, 91
BanII GRGCYC 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 552
BccI CCATC 2 cut(s) 144, 401
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 2 cut(s) 263, 534
BcnI CCSGG 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 2 cut(s) 93, 519
BfmI CTRYAG 1 cut(s) 354
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 3 cut(s) 263, 502, 534
Bme18I GGWCC 2 cut(s) 128, 479
BmgT120I GGNCC 2 cut(s) 128, 479
BmrFI CCNGG 3 cut(s) 263, 502, 534
BmsI GCATC 3 cut(s) 14, 68, 433
BpiI GAAGAC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 261, 532
Bsc4I CCNNNNNNNGG 2 cut(s) 375, 539
Bse1I ACTGG 2 cut(s) 130, 353
Bse3DI GCAATG 2 cut(s) 94, 498
BseBI CCWGG 2 cut(s) 263, 534
BseDI CCNNGG 2 cut(s) 261, 532
BseLI CCNNNNNNNGG 2 cut(s) 375, 539
BseMI GCAATG 2 cut(s) 94, 498
BseMII CTCAG 1 cut(s) 223
BseNI ACTGG 2 cut(s) 130, 353
BseRI GAGGAG 1 cut(s) 192
BshFI GGCC 2 cut(s) 25, 266
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 1 cut(s) 501
BslI CCNNNNNNNGG 2 cut(s) 375, 539
BsmAI GTCTC 1 cut(s) 413
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 25, 266
Bsp1286I GDGCHC 1 cut(s) 552
BspACI CCGC 2 cut(s) 267, 446
BspANI GGCC 2 cut(s) 25, 266
BspCNI CTCAG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 94, 498
BsrI ACTGG 2 cut(s) 130, 353
BssECI CCNNGG 2 cut(s) 261, 532
Bst2UI CCWGG 2 cut(s) 263, 534
Bst4CI ACNGT 2 cut(s) 301, 562
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 20, 209
BstEII GGTNACC 1 cut(s) 496
BstMAI GTCTC 1 cut(s) 413
BstNI CCWGG 2 cut(s) 263, 534
BstNSI RCATGY 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 3 cut(s) 261, 500, 532
BstSFI CTRYAG 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 2 cut(s) 25, 266
BtsIMutI CAGTG 2 cut(s) 26, 123
CaiI CAGNNNCTG 1 cut(s) 348
CciI TCATGA 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 128, 479
Csp6I GTAC 2 cut(s) 75, 522
CviAII CATG 2 cut(s) 33, 250
CviJI RGCY 5 cut(s) 25, 266, 307, 505, 550
CviKI_1 RGCY 5 cut(s) 25, 266, 307, 505, 550
CviQI GTAC 2 cut(s) 75, 522
DdeI CTNAG 2 cut(s) 20, 209
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 128, 479
Eco53kI GAGCTC 1 cut(s) 550
Eco91I GGTNACC 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 550
EcoO65I GGTNACC 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 261, 532
EcoT38I GRGCYC 1 cut(s) 552
FaeI CATG 2 cut(s) 36, 253
FaiI YATR 3 cut(s) 34, 251, 356
FatI CATG 2 cut(s) 32, 249
Fnu4HI GCNGC 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 93, 519
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 2 cut(s) 25, 266
HapII CCGG 1 cut(s) 501
Hin1II CATG 2 cut(s) 36, 253
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 3 cut(s) 108, 275, 421
HpaII CCGG 1 cut(s) 501
HphI GGTGA 6 cut(s) 106, 125, 213, 313, 403, 490
Hpy166II GTNNAC 2 cut(s) 38, 221
Hpy188I TCNGA 5 cut(s) 66, 212, 243, 274, 442
Hpy188III TCNNGA 3 cut(s) 250, 452, 540
Hpy8I GTNNAC 2 cut(s) 38, 221
HpyAV CCTTC 3 cut(s) 246, 376, 495
HpyCH4III ACNGT 2 cut(s) 301, 562
HpyCH4V TGCA 2 cut(s) 365, 491
HpyF3I CTNAG 2 cut(s) 20, 209
Hsp92II CATG 2 cut(s) 36, 253
LmnI GCTCC 1 cut(s) 460
LweI GCATC 3 cut(s) 14, 68, 433
MaeI CTAG 2 cut(s) 93, 519
MaeIII GTNAC 1 cut(s) 496
MboII GAAGA 5 cut(s) 137, 143, 164, 167, 170
MfeI CAATTG 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 4 cut(s) 45, 50, 371, 436
MlyI GAGTC 1 cut(s) 415
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 31
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 3 cut(s) 263, 502, 534
MunI CAATTG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 263, 534
NciI CCSGG 1 cut(s) 502
NlaIII CATG 2 cut(s) 36, 253
NmuCI GTSAC 1 cut(s) 496
NspI RCATGY 1 cut(s) 36
PagI TCATGA 1 cut(s) 249
PciI ACATGT 1 cut(s) 32
PctI GAATGC 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 108, 275
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PscI ACATGT 1 cut(s) 32
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 261, 532
PspEI GGTNACC 1 cut(s) 496
PspGI CCWGG 2 cut(s) 261, 532
PspPI GGNCC 2 cut(s) 128, 479
PstNI CAGNNNCTG 1 cut(s) 348
RsaI GTAC 2 cut(s) 76, 523
RsaNI GTAC 2 cut(s) 75, 522
RseI CAYNNNNRTG 1 cut(s) 31
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 267
Sau96I GGNCC 2 cut(s) 128, 479
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 3 cut(s) 263, 502, 534
SduI GDGCHC 1 cut(s) 552
SetI ASST 5 cut(s) 187, 226, 238, 513, 552
SfaNI GCATC 3 cut(s) 14, 68, 433
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 2 cut(s) 128, 479
SmiMI CAYNNNNRTG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 4 cut(s) 45, 50, 371, 436
SsiI CCGC 2 cut(s) 267, 446
SspMI CTAG 2 cut(s) 93, 519
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 3 cut(s) 261, 500, 532
TaaI ACNGT 2 cut(s) 301, 562
TaqI TCGA 1 cut(s) 232
TasI AATT 4 cut(s) 45, 50, 371, 436
TatI WGTACW 1 cut(s) 521
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 108, 275
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 33, 130
TseFI GTSAC 1 cut(s) 496
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 2 cut(s) 100, 137
TspGWI ACGGA 1 cut(s) 57
TspRI CASTG 2 cut(s) 33, 130
VpaK11BI GGWCC 2 cut(s) 128, 479
XapI RAATTY 2 cut(s) 50, 436
XceI RCATGY 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 2 cut(s) 93, 519
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.