RchiOBHm_Chr3g0470251

Belongs to the acylphosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015379
Physical Location & Seq
Reverse (-)
16164984 .. 16166254
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43606

Sequence Viewer

Length: 549 bp
ATGCAAATGCCACTTCCACACAGTACCAGATTCCTCGCATCTTGGAACAAATGGACCCAAATCAACGATGCTGCTAGTTCTCCTCTTAGATTCATCACCCATCTCACTTATCCTCGCCACCATCATCTTCATCTTTCTCTTTCGTTTCGCACTCTTCTTCTTCTACCTCGCCCTTCTCTTTCTCCTCTGCTCAGACCTCGTTCACCTCACTTTCCACCTTCTCGGATTTTCATGACCACCACACAGGCCGCCTCCGAATCCCCCCAATCCTCCACCAAAACGGTGAGGCTTGTGATAAAAGGGAGGGTTCAGGGTGTGTTTTACAGGAACTGGACTATAGAGAATGCAACCCAATTGGGGTTGAAGGGTTGGGTGAGGAACAGGAGAGATGGGTCTGTGGAGACTCTGCTATCTGGGAATTCCGATGCGGTCCAGGAAATGGAGCAGAGGTGTCGACGAGGTCCTCCATCTGCAATGGTCACTGGGCTTGAGGTTAATCCCAGCACTGATGACCCTGGTTCTGGATTTGAGCGCAAACAAACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00620 ko00627 ko01120 map00620 map00627 map01120
Pfam Domains
Protein Families
Acylphosphatase

Protein Analysis

182

Amino Acids

20.59

Weight (kDa)

11.19

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acylphosphatase PF00708 96 - 177 1.8e-23 Acylphosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03370
fragaria_vesca FvH4_6g16390
malus_domestica MD04G1093600.v1.1
prunus_persica Prupe.6G232200_v2.0.a1
pyrus_communis pycom04g08880
rosa_chinensis RchiOBHm_Chr3g0470251
rosa_laevigata RLG00000024286
rosa_multiflora Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii Rroxscaffold_6G00411030
rosa_rugosa Rorug03G0107700
rosa_samantha Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana Rw3G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 439
AccI GTMKAC 1 cut(s) 454
AciI CCGC 2 cut(s) 249, 428
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 3 cut(s) 357, 439, 521
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 2 cut(s) 432, 514
Alw26I GTCTC 1 cut(s) 395
AlwNI CAGNNNCTG 1 cut(s) 330
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 418
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 3 cut(s) 54, 430, 461
AsuHPI GGTGA 4 cut(s) 88, 195, 295, 385
AvaII GGWCC 3 cut(s) 54, 430, 461
BbvI GCAGC 1 cut(s) 58
BccI CCATC 4 cut(s) 108, 129, 383, 475
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BciT130I CCWGG 2 cut(s) 434, 516
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 72, 249
BlsI GCNGC 2 cut(s) 73, 250
Bme1390I CCNGG 2 cut(s) 434, 516
Bme18I GGWCC 3 cut(s) 54, 430, 461
BmgT120I GGNCC 3 cut(s) 54, 430, 461
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 434, 516
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 3 cut(s) 47, 58, 415
BmuI ACTGGG 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 514
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 357, 439, 521
Bse1I ACTGG 2 cut(s) 335, 487
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 434, 516
BseDI CCNNGG 1 cut(s) 514
BseLI CCNNNNNNNGG 3 cut(s) 357, 439, 521
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 335, 487
BseRI GAGGAG 2 cut(s) 72, 174
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 500
BshFI GGCC 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 357, 439, 521
BsmAI GTCTC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 1 cut(s) 248
BspACI CCGC 2 cut(s) 249, 428
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 2 cut(s) 335, 487
BssECI CCNNGG 1 cut(s) 514
Bst2UI CCWGG 2 cut(s) 434, 516
Bst4CI ACNGT 3 cut(s) 23, 283, 544
Bst6I CTCTTC 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 86, 191
BstHHI GCGC 1 cut(s) 534
BstMAI GTCTC 1 cut(s) 395
BstNI CCWGG 2 cut(s) 434, 516
BstSCI CCNGG 2 cut(s) 432, 514
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 248
BtsIMutI CAGTG 2 cut(s) 480, 504
CaiI CAGNNNCTG 1 cut(s) 330
CciI TCATGA 1 cut(s) 231
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 3 cut(s) 54, 430, 461
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 232
CviJI RGCY 3 cut(s) 248, 289, 487
CviKI_1 RGCY 3 cut(s) 248, 289, 487
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 86, 191
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 3 cut(s) 54, 430, 461
EcoO109I RGGNCCY 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 432, 514
FaeI CATG 1 cut(s) 235
FaiI YATR 2 cut(s) 233, 338
FatI CATG 1 cut(s) 231
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 72, 249
Fsp4HI GCNGC 2 cut(s) 72, 249
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 533
GluI GCNGC 2 cut(s) 72, 249
GsaI CCCAGC 1 cut(s) 504
HaeIII GGCC 1 cut(s) 248
HhaI GCGC 1 cut(s) 534
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 1 cut(s) 455
HindII GTYRAC 1 cut(s) 455
HinfI GANTC 4 cut(s) 30, 90, 257, 403
HphI GGTGA 4 cut(s) 88, 195, 295, 385
Hpy166II GTNNAC 2 cut(s) 203, 455
Hpy188I TCNGA 4 cut(s) 194, 225, 256, 424
Hpy188III TCNNGA 2 cut(s) 232, 522
Hpy8I GTNNAC 2 cut(s) 203, 455
Hpy99I CGWCG 1 cut(s) 459
HpyAV CCTTC 3 cut(s) 183, 228, 358
HpyCH4III ACNGT 3 cut(s) 23, 283, 544
HpyCH4V TGCA 3 cut(s) 4, 347, 473
HpyF3I CTNAG 2 cut(s) 86, 191
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 3 cut(s) 47, 58, 415
MaeI CTAG 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 478
MboII GAAGA 4 cut(s) 119, 146, 149, 152
MfeI CAATTG 1 cut(s) 353
MluCI AATT 2 cut(s) 353, 418
MlyI GAGTC 1 cut(s) 397
MseI TTAA 1 cut(s) 495
MspR9I CCNGG 2 cut(s) 434, 516
MunI CAATTG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 2 cut(s) 434, 516
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 478
PagI TCATGA 1 cut(s) 231
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 30, 90, 257
PflFI GACNNNGTC 1 cut(s) 459
PflMI CCANNNNNTGG 1 cut(s) 439
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 2 cut(s) 73, 250
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PpuMI RGGWCCY 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 432, 514
PspFI CCCAGC 1 cut(s) 500
PspGI CCWGG 2 cut(s) 432, 514
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 3 cut(s) 54, 430, 461
PspPPI RGGWCCY 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 330
PsyI GACNNNGTC 1 cut(s) 459
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SalI GTCGAC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 2 cut(s) 72, 249
Sau96I GGNCC 3 cut(s) 54, 430, 461
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 434, 516
SetI ASST 7 cut(s) 169, 199, 208, 220, 452, 463, 495
SfaNI GCATC 3 cut(s) 47, 58, 415
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 3 cut(s) 54, 430, 461
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 2 cut(s) 353, 418
SsiI CCGC 2 cut(s) 249, 428
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 432, 514
TaaI ACNGT 3 cut(s) 23, 283, 544
TaqI TCGA 1 cut(s) 454
TasI AATT 2 cut(s) 353, 418
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 3 cut(s) 30, 90, 257
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 2 cut(s) 487, 511
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 3 cut(s) 82, 119, 220
TspRI CASTG 2 cut(s) 487, 511
Tth111I GACNNNGTC 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 439
VpaK11BI GGWCC 3 cut(s) 54, 430, 461
XapI RAATTY 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 454
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.