MD04G1093600.v1.1

Belongs to the acylphosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015379
Physical Location & Seq
Forward (+)
16985454 .. 16987485
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1093600.v1.1.491

Sequence Viewer

Length: 669 bp
ATGGCATCAGCAATCTCTGGGAGGCCACTGAGATTCCTCACATCTCGGAGCCCCAAACATCCACCACATAAATGGAATCAAATCAATAACTCAGCCAATGCTTCTGTTCCTGCTCTTAGATTCGTCGTCCCCAATCTCCATAATCCTCACCCTCTTCCTCTTCGCCCTCCTCTTTCGCTTTGCCTTCCTCCTCTTCTTCCTCGCCCTCCTCTTTCTTCTCTGCTCGGACCTTGTCCACCTCCTCTTCGACATTCTCTGCTCCTCATGACCACTTCCCAGGCCGCCTTCTCTGATTCCTCCCAGTCGTCCTCCTCCGCCAAAACGGTGAGATTGGTGATAAAGGGGAGAGTGCAGGGTGTGTTTTACAGGGACTGGACTGTGGGGAATGCAACCGAATTAGGCTTGAAAGGTTGGGTTCGGAACCGGAGAGATGGGTCTGTGGAGACACTGCTTTCTGGGAACCCTGATGCGGTTAAAGAGATGGAGCAGAGGTGTCGCCGCGGCCCTCCATCTGCTGTTGTCACAGGGCTAGAGGTTTTTCCTAGCACTGAGGACCCTGGCACTGGATTCGAGCGCAAACAAACGAATTCTGTGGGTGAAAAAACCAGGATATTGACTAAGAGAAGACAAAAAGACTTGAATTGCTTCCTGGTTTGCTTGCTAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00620 ko00627 ko01120 map00620 map00627 map01120
Pfam Domains
Protein Families
Acylphosphatase

Protein Analysis

223

Amino Acids

24.35

Weight (kDa)

10.7

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acylphosphatase PF00708 110 - 191 8.6e-22 Acylphosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03370
fragaria_vesca FvH4_6g16390
malus_domestica MD04G1093600.v1.1
prunus_persica Prupe.6G232200_v2.0.a1
pyrus_communis pycom04g08880
rosa_chinensis RchiOBHm_Chr3g0470251
rosa_laevigata RLG00000024286
rosa_multiflora Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii Rroxscaffold_6G00411030
rosa_rugosa Rorug03G0107700
rosa_samantha Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana Rw3G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 501
AciI CCGC 5 cut(s) 282, 315, 470, 499, 501
AcsI RAATTY 1 cut(s) 586
AfiI CCNNNNNNNGG 2 cut(s) 469, 563
AgsI TTSAA 2 cut(s) 406, 640
AjnI CCWGG 4 cut(s) 276, 556, 605, 648
Alw26I GTCTC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 372
AoxI GGCC 3 cut(s) 23, 279, 502
ApoI RAATTY 1 cut(s) 586
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 3 cut(s) 227, 503, 553
AsuHPI GGTGA 4 cut(s) 140, 337, 346, 608
AvaII GGWCC 2 cut(s) 227, 553
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 631
BccI CCATC 3 cut(s) 425, 475, 517
BcgI CGANNNNNNTGC 4 cut(s) 476, 510, 550, 584
BciT130I CCWGG 4 cut(s) 278, 558, 607, 650
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 3 cut(s) 530, 543, 662
BisI GCNGC 3 cut(s) 282, 499, 502
BlsI GCNGC 3 cut(s) 283, 500, 503
Bme1390I CCNGG 4 cut(s) 278, 558, 607, 650
Bme18I GGWCC 2 cut(s) 227, 553
BmgT120I GGNCC 3 cut(s) 227, 503, 553
BmiI GGNNCC 4 cut(s) 50, 422, 461, 555
BmrFI CCNGG 4 cut(s) 278, 558, 607, 650
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 2 cut(s) 14, 457
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 631
BsaJI CCNNGG 3 cut(s) 276, 499, 556
BsaWI WCCGGW 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 563
Bse1I ACTGG 3 cut(s) 301, 377, 568
BseBI CCWGG 4 cut(s) 278, 558, 607, 650
BseDI CCNNGG 3 cut(s) 276, 499, 556
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 469, 563
BseMII CTCAG 3 cut(s) 20, 105, 540
BseNI ACTGG 3 cut(s) 301, 377, 568
BseRI GAGGAG 6 cut(s) 159, 180, 198, 231, 251, 301
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 3 cut(s) 25, 281, 504
BsiSI CCGG 1 cut(s) 424
BslFI GGGAC 2 cut(s) 113, 383
BslI CCNNNNNNNGG 2 cut(s) 469, 563
BsmAI GTCTC 1 cut(s) 437
BsmFI GGGAC 2 cut(s) 113, 383
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 3 cut(s) 25, 281, 504
Bsp1286I GDGCHC 1 cut(s) 53
BspACI CCGC 5 cut(s) 282, 315, 470, 499, 501
BspANI GGCC 3 cut(s) 25, 281, 504
BspCNI CTCAG 3 cut(s) 21, 104, 541
BspFNI CGCG 1 cut(s) 501
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 4 cut(s) 50, 422, 461, 555
BsrI ACTGG 3 cut(s) 301, 377, 568
BssECI CCNNGG 3 cut(s) 276, 499, 556
Bst2UI CCWGG 4 cut(s) 278, 558, 607, 650
Bst4CI ACNGT 2 cut(s) 325, 379
Bst6I CTCTTC 4 cut(s) 159, 165, 198, 249
BstC8I GCNNGC 1 cut(s) 659
BstDEI CTNAG 5 cut(s) 29, 91, 116, 549, 618
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 576
BstMAI GTCTC 1 cut(s) 437
BstMWI GCNNNNNNNGC 1 cut(s) 663
BstNI CCWGG 4 cut(s) 278, 558, 607, 650
BstSCI CCNGG 4 cut(s) 276, 556, 605, 648
BstUI CGCG 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 631
BstXI CCANNNNNNTGG 1 cut(s) 72
BsuRI GGCC 3 cut(s) 25, 281, 504
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 446
BtsIMutI CAGTG 4 cut(s) 26, 446, 546, 561
Cac8I GCNNGC 1 cut(s) 659
CaiI CAGNNNCTG 1 cut(s) 372
CciI TCATGA 1 cut(s) 264
CfoI GCGC 1 cut(s) 576
Cfr13I GGNCC 3 cut(s) 227, 503, 553
Cfr42I CCGCGG 1 cut(s) 502
CviAII CATG 1 cut(s) 265
CviJI RGCY 8 cut(s) 25, 51, 95, 281, 402, 504, 529, 666
CviKI_1 RGCY 8 cut(s) 25, 51, 95, 281, 402, 504, 529, 666
DdeI CTNAG 5 cut(s) 29, 91, 116, 549, 618
Eam1104I CTCTTC 4 cut(s) 159, 165, 198, 249
EarI CTCTTC 4 cut(s) 159, 165, 198, 249
EciI GGCGGA 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 227, 553
EcoO109I RGGNCCY 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 4 cut(s) 276, 556, 605, 648
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 1 cut(s) 268
FaiI YATR 3 cut(s) 69, 141, 266
FaqI GGGAC 2 cut(s) 113, 383
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 282, 499, 502
FokI GGATG 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 282, 499, 502
FspBI CTAG 3 cut(s) 530, 543, 662
GlaI GCGC 1 cut(s) 575
GluI GCNGC 3 cut(s) 282, 499, 502
HaeIII GGCC 3 cut(s) 25, 281, 504
HapII CCGG 1 cut(s) 424
HhaI GCGC 1 cut(s) 576
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HinfI GANTC 5 cut(s) 33, 76, 120, 293, 567
HpaII CCGG 1 cut(s) 424
HphI GGTGA 4 cut(s) 140, 337, 346, 608
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 4 cut(s) 48, 227, 292, 420
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 194, 295
HpyCH4III ACNGT 2 cut(s) 325, 379
HpyCH4V TGCA 2 cut(s) 352, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 663
HpyF3I CTNAG 5 cut(s) 29, 91, 116, 549, 618
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 574
KspI CCGCGG 1 cut(s) 502
LmnI GCTCC 3 cut(s) 48, 264, 484
LweI GCATC 2 cut(s) 14, 457
MaeI CTAG 3 cut(s) 530, 543, 662
MaeIII GTNAC 1 cut(s) 520
MboII GAAGA 7 cut(s) 146, 152, 185, 188, 207, 236, 636
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 3 cut(s) 395, 586, 640
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 70
MspA1I CMGCKG 1 cut(s) 501
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 4 cut(s) 278, 558, 607, 650
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 4 cut(s) 278, 558, 607, 650
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 663
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 4 cut(s) 50, 422, 461, 555
NmuCI GTSAC 1 cut(s) 520
PagI TCATGA 1 cut(s) 264
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 5 cut(s) 33, 76, 120, 293, 567
PflFI GACNNNGTC 1 cut(s) 231
PkrI GCNGC 3 cut(s) 283, 500, 503
PpuMI RGGWCCY 1 cut(s) 553
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 4 cut(s) 276, 556, 605, 648
PspGI CCWGG 4 cut(s) 276, 556, 605, 648
PspN4I GGNNCC 4 cut(s) 50, 422, 461, 555
PspPI GGNCC 3 cut(s) 227, 503, 553
PspPPI RGGWCCY 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 372
PsyI GACNNNGTC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 70
SacII CCGCGG 1 cut(s) 502
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 3 cut(s) 282, 499, 502
Sau96I GGNCC 3 cut(s) 227, 503, 553
ScrFI CCNGG 4 cut(s) 278, 558, 607, 650
SduI GDGCHC 1 cut(s) 53
SetI ASST 5 cut(s) 232, 241, 412, 494, 537
SfaNI GCATC 2 cut(s) 14, 457
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 2 cut(s) 227, 553
SmiMI CAYNNNNRTG 1 cut(s) 70
Sse9I AATT 3 cut(s) 395, 586, 640
SsiI CCGC 5 cut(s) 282, 315, 470, 499, 501
SspMI CTAG 3 cut(s) 530, 543, 662
StyD4I CCNGG 4 cut(s) 276, 556, 605, 648
TaaI ACNGT 2 cut(s) 325, 379
TaqI TCGA 2 cut(s) 247, 570
TasI AATT 3 cut(s) 395, 586, 640
TauI GCSGC 3 cut(s) 284, 501, 504
TfiI GAWTC 5 cut(s) 33, 76, 120, 293, 567
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 4 cut(s) 33, 453, 553, 568
TseFI GTSAC 1 cut(s) 520
Tsp45I GTSAC 1 cut(s) 520
TspRI CASTG 4 cut(s) 33, 453, 553, 568
Tth111I GACNNNGTC 1 cut(s) 231
VpaK11BI GGWCC 2 cut(s) 227, 553
XapI RAATTY 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 3 cut(s) 530, 543, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.