Rmu_co8326943.1_g000001

Belongs to the acylphosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8326943.1
OG0015379
Physical Location & Seq
Reverse (-)
95 .. 891
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8326943.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgccacttccacacagtaccagattcctcgcatcttggaacaaatggacccaaatcaacgatgttgctagttctcctcttagattcatcacccatctcacttatcctcgccaccatcatcttcatctttctctttcgtttcgcactcttcttcttctacctcgcccttctctttctcctctgctcagacctcgttcacctcactttccaccttctcggattttcatgaccaccacacaggccgcctccgaatccccccaatcctccaccaaaacggtgaggcttgtgataaaagggagggttcagggtgtgttttacaggaactggactatagagaatgcaacccaattggggttgaagggttgggtgaggaacaggagagatgggtctgtggagactctgctatctgggaattccgatgcggtccaggaaatggagcagaggtgtcgacgaggtcctccatctgcaatggtcactgggcttgaggttaatcccagcactgatgaccctggttctggatttgagcgcaaacaaacggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00620 ko00627 ko01120 map00620 map00627 map01120
Pfam Domains
Protein Families
Acylphosphatase

Protein Analysis

180

Amino Acids

20.36

Weight (kDa)

11.19

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03370
fragaria_vesca FvH4_6g16390
malus_domestica MD04G1093600.v1.1
prunus_persica Prupe.6G232200_v2.0.a1
pyrus_communis pycom04g08880
rosa_chinensis RchiOBHm_Chr3g0470251
rosa_laevigata RLG00000024286
rosa_multiflora Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii Rroxscaffold_6G00411030
rosa_rugosa Rorug03G0107700
rosa_samantha Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana Rw3G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccI GTMKAC 1 cut(s) 448
AciI CCGC 2 cut(s) 243, 422
AcsI RAATTY 1 cut(s) 412
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 3 cut(s) 351, 433, 515
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 2 cut(s) 426, 508
Alw26I GTCTC 1 cut(s) 389
AlwNI CAGNNNCTG 1 cut(s) 324
AoxI GGCC 1 cut(s) 240
ApoI RAATTY 1 cut(s) 412
AspLEI GCGC 1 cut(s) 528
AspS9I GGNCC 3 cut(s) 48, 424, 455
AsuHPI GGTGA 4 cut(s) 82, 189, 289, 379
AvaII GGWCC 3 cut(s) 48, 424, 455
BccI CCATC 4 cut(s) 102, 123, 377, 469
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 2 cut(s) 428, 510
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 428, 510
Bme18I GGWCC 3 cut(s) 48, 424, 455
BmgT120I GGNCC 3 cut(s) 48, 424, 455
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 2 cut(s) 428, 510
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 41, 409
BmuI ACTGGG 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 433, 515
Bse1I ACTGG 2 cut(s) 329, 481
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 2 cut(s) 428, 510
BseDI CCNNGG 1 cut(s) 508
BseLI CCNNNNNNNGG 3 cut(s) 351, 433, 515
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 329, 481
BseRI GAGGAG 2 cut(s) 66, 168
BseYI CCCAGC 1 cut(s) 494
BshFI GGCC 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 351, 433, 515
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 1 cut(s) 242
BspACI CCGC 2 cut(s) 243, 422
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 198
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 2 cut(s) 329, 481
BssECI CCNNGG 1 cut(s) 508
Bst2UI CCWGG 2 cut(s) 428, 510
Bst4CI ACNGT 3 cut(s) 17, 277, 538
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 2 cut(s) 80, 185
BstHHI GCGC 1 cut(s) 528
BstMAI GTCTC 1 cut(s) 389
BstNI CCWGG 2 cut(s) 428, 510
BstSCI CCNGG 2 cut(s) 426, 508
BstSFI CTRYAG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 242
BtsIMutI CAGTG 2 cut(s) 474, 498
CaiI CAGNNNCTG 1 cut(s) 324
CciI TCATGA 1 cut(s) 225
CfoI GCGC 1 cut(s) 528
Cfr13I GGNCC 3 cut(s) 48, 424, 455
Csp6I GTAC 1 cut(s) 18
CviAII CATG 1 cut(s) 226
CviJI RGCY 3 cut(s) 242, 283, 481
CviKI_1 RGCY 3 cut(s) 242, 283, 481
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 2 cut(s) 80, 185
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco47I GGWCC 3 cut(s) 48, 424, 455
EcoO109I RGGNCCY 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 426, 508
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 227, 332
FatI CATG 1 cut(s) 225
FblI GTMKAC 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 69
GlaI GCGC 1 cut(s) 527
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 498
HaeIII GGCC 1 cut(s) 242
HhaI GCGC 1 cut(s) 528
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 1 cut(s) 526
HinP1I GCGC 1 cut(s) 526
HincII GTYRAC 1 cut(s) 449
HindII GTYRAC 1 cut(s) 449
HinfI GANTC 4 cut(s) 24, 84, 251, 397
HphI GGTGA 4 cut(s) 82, 189, 289, 379
Hpy166II GTNNAC 2 cut(s) 197, 449
Hpy188I TCNGA 4 cut(s) 188, 219, 250, 418
Hpy188III TCNNGA 2 cut(s) 226, 516
Hpy8I GTNNAC 2 cut(s) 197, 449
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 3 cut(s) 177, 222, 352
HpyCH4III ACNGT 3 cut(s) 17, 277, 538
HpyCH4V TGCA 2 cut(s) 341, 467
HpyF3I CTNAG 2 cut(s) 80, 185
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 1 cut(s) 526
LmnI GCTCC 1 cut(s) 436
LweI GCATC 2 cut(s) 41, 409
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 472
MboII GAAGA 4 cut(s) 113, 140, 143, 146
MfeI CAATTG 1 cut(s) 347
MluCI AATT 2 cut(s) 347, 412
MlyI GAGTC 1 cut(s) 391
MseI TTAA 1 cut(s) 489
MspR9I CCNGG 2 cut(s) 428, 510
MunI CAATTG 1 cut(s) 347
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 2 cut(s) 428, 510
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 472
PagI TCATGA 1 cut(s) 225
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 24, 84, 251
PflFI GACNNNGTC 1 cut(s) 453
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
PpuMI RGGWCCY 1 cut(s) 455
Psp5II RGGWCCY 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 426, 508
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 2 cut(s) 426, 508
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 3 cut(s) 48, 424, 455
PspPPI RGGWCCY 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 324
PsyI GACNNNGTC 1 cut(s) 453
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SalI GTCGAC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 1 cut(s) 243
Sau96I GGNCC 3 cut(s) 48, 424, 455
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 428, 510
SetI ASST 7 cut(s) 163, 193, 202, 214, 446, 457, 489
SfaNI GCATC 2 cut(s) 41, 409
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 3 cut(s) 48, 424, 455
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 2 cut(s) 347, 412
SsiI CCGC 2 cut(s) 243, 422
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 426, 508
TaaI ACNGT 3 cut(s) 17, 277, 538
TaqI TCGA 1 cut(s) 448
TasI AATT 2 cut(s) 347, 412
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 3 cut(s) 24, 84, 251
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 2 cut(s) 481, 505
TseFI GTSAC 1 cut(s) 472
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 76, 113, 214
TspRI CASTG 2 cut(s) 481, 505
Tth111I GACNNNGTC 1 cut(s) 453
Van91I CCANNNNNTGG 1 cut(s) 433
VpaK11BI GGWCC 3 cut(s) 48, 424, 455
XapI RAATTY 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 448
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.