Rroxscaffold_6G00411030

Belongs to the acylphosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015379
Physical Location & Seq
Forward (+)
33573704 .. 33574503
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411030.1

Sequence Viewer

Length: 546 bp
ATGCAAATGCCACTTCCACACAGTACCAGATTCCTCGCGTCTTGGAGCAAATGGACCCAAATCAACAATGCTAGTTCTCATCTTAGATTCATCACCCATCTCACTTATCCTCGCCACCATCATCTTCATCTTTCTCTTTCGTTTCGCGCTCTTCTTCTTCTACCTCGCCCTTGTCTTTCTCCTCTGCTCAGACCTCGTTCACCTCACTTTCCACCTTTTCGGATTCTCATGACTACCACACAGGCCGCCTCAGAATCCCCCCAATCCTCCACCAAAACGGTGAGGCTTGTGATAAAAGGGAGGGTTCAGGGTGTGTTTTACAGGAACTGGACTATAGAGAATGCAACCCAATTGGGGTTGAAGGGTTGGGTGAGGAACAGGAGAGATGGGTCTGTGGAGACTCTGCTATCTGGGAATTCCGATGCGGTCCAGGAAATGGAGCAGAGATGTCGAAGAGGTCCTCCATCTGCATTGGTCACTGGGCTTGAGGTTTATCCCAGCACTGATGACCCTGGTTCTGGATTTGAGCGCAAACAAACGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00620 ko00627 ko01120 map00620 map00627 map01120
Pfam Domains
Protein Families
Acylphosphatase

Protein Analysis

181

Amino Acids

20.58

Weight (kDa)

11.02

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acylphosphatase PF00708 95 - 176 5.6e-23 Acylphosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015379)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03370
fragaria_vesca FvH4_6g16390
malus_domestica MD04G1093600.v1.1
prunus_persica Prupe.6G232200_v2.0.a1
pyrus_communis pycom04g08880
rosa_chinensis RchiOBHm_Chr3g0470251
rosa_laevigata RLG00000024286
rosa_multiflora Rmu_co8326943.1_g000001 Rmu_sc0011073.1_g000005
rosa_roxburghii Rroxscaffold_6G00411030
rosa_rugosa Rorug03G0107700
rosa_samantha Rh3AG157300 Rh3BG181400 Rh3CG172300 Rh3DG193400
rosa_wichuraiana Rw3G014970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 436
AccII CGCG 2 cut(s) 38, 147
AciI CCGC 2 cut(s) 246, 425
AcsI RAATTY 1 cut(s) 415
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 3 cut(s) 354, 436, 518
AgsI TTSAA 1 cut(s) 361
AjnI CCWGG 2 cut(s) 429, 511
Alw26I GTCTC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 327
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 415
AspLEI GCGC 2 cut(s) 149, 531
AspS9I GGNCC 3 cut(s) 54, 427, 458
AsuHPI GGTGA 4 cut(s) 85, 192, 292, 382
AvaII GGWCC 3 cut(s) 54, 427, 458
BccI CCATC 4 cut(s) 105, 126, 380, 472
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 2 cut(s) 431, 513
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 431, 513
Bme18I GGWCC 3 cut(s) 54, 427, 458
BmgT120I GGNCC 3 cut(s) 54, 427, 458
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 431, 513
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 412
BmuI ACTGGG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 436, 518
Bse1I ACTGG 2 cut(s) 332, 484
BseBI CCWGG 2 cut(s) 431, 513
BseDI CCNNGG 1 cut(s) 511
BseLI CCNNNNNNNGG 3 cut(s) 354, 436, 518
BseMII CTCAG 2 cut(s) 202, 264
BseNI ACTGG 2 cut(s) 332, 484
BseRI GAGGAG 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 497
Bsh1236I CGCG 2 cut(s) 38, 147
BshFI GGCC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 354, 436, 518
BsmAI GTCTC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 245
BspACI CCGC 2 cut(s) 246, 425
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 201, 263
BspFNI CGCG 2 cut(s) 38, 147
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 156
BsrI ACTGG 2 cut(s) 332, 484
BssECI CCNNGG 1 cut(s) 511
Bst2UI CCWGG 2 cut(s) 431, 513
Bst4CI ACNGT 3 cut(s) 23, 280, 541
Bst6I CTCTTC 2 cut(s) 156, 448
BstDEI CTNAG 3 cut(s) 83, 188, 250
BstFNI CGCG 2 cut(s) 38, 147
BstHHI GCGC 2 cut(s) 149, 531
BstMAI GTCTC 1 cut(s) 392
BstNI CCWGG 2 cut(s) 431, 513
BstSCI CCNGG 2 cut(s) 429, 511
BstSFI CTRYAG 1 cut(s) 333
BstUI CGCG 2 cut(s) 38, 147
BsuRI GGCC 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 477, 501
CaiI CAGNNNCTG 1 cut(s) 327
CciI TCATGA 1 cut(s) 228
CfoI GCGC 2 cut(s) 149, 531
Cfr13I GGNCC 3 cut(s) 54, 427, 458
CseI GACGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 24
CviAII CATG 1 cut(s) 229
CviJI RGCY 3 cut(s) 245, 286, 484
CviKI_1 RGCY 3 cut(s) 245, 286, 484
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 3 cut(s) 83, 188, 250
Eam1104I CTCTTC 2 cut(s) 156, 448
EarI CTCTTC 2 cut(s) 156, 448
Eco47I GGWCC 3 cut(s) 54, 427, 458
EcoO109I RGGNCCY 1 cut(s) 458
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 429, 511
FaeI CATG 1 cut(s) 232
FaiI YATR 2 cut(s) 230, 335
FatI CATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 1 cut(s) 72
GlaI GCGC 2 cut(s) 148, 530
GluI GCNGC 1 cut(s) 246
GsaI CCCAGC 1 cut(s) 501
HaeIII GGCC 1 cut(s) 245
HgaI GACGC 1 cut(s) 27
HhaI GCGC 2 cut(s) 149, 531
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 2 cut(s) 147, 529
HinP1I GCGC 2 cut(s) 147, 529
HinfI GANTC 5 cut(s) 30, 87, 223, 254, 400
HphI GGTGA 4 cut(s) 85, 192, 292, 382
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 4 cut(s) 191, 222, 253, 421
Hpy188III TCNNGA 2 cut(s) 229, 519
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 3 cut(s) 23, 280, 541
HpyCH4V TGCA 3 cut(s) 4, 344, 470
HpyF3I CTNAG 3 cut(s) 83, 188, 250
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 2 cut(s) 147, 529
LguI GCTCTTC 1 cut(s) 156
LmnI GCTCC 2 cut(s) 45, 439
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 475
MboII GAAGA 5 cut(s) 116, 143, 146, 149, 465
MfeI CAATTG 1 cut(s) 350
MluCI AATT 2 cut(s) 350, 415
MlyI GAGTC 1 cut(s) 394
MspR9I CCNGG 2 cut(s) 431, 513
MunI CAATTG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 2 cut(s) 431, 513
MvnI CGCG 2 cut(s) 38, 147
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 475
PagI TCATGA 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 156
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 4 cut(s) 30, 87, 223, 254
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 429
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 458
Psp6I CCWGG 2 cut(s) 429, 511
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 2 cut(s) 429, 511
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 3 cut(s) 54, 427, 458
PspPPI RGGWCCY 1 cut(s) 458
PstNI CAGNNNCTG 1 cut(s) 327
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 156
SatI GCNGC 1 cut(s) 246
Sau96I GGNCC 3 cut(s) 54, 427, 458
SchI GAGTC 1 cut(s) 394
ScrFI CCNGG 2 cut(s) 431, 513
SetI ASST 6 cut(s) 166, 196, 205, 217, 460, 492
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 3 cut(s) 54, 427, 458
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 2 cut(s) 350, 415
SsiI CCGC 2 cut(s) 246, 425
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 429, 511
TaaI ACNGT 3 cut(s) 23, 280, 541
TaqI TCGA 1 cut(s) 451
TasI AATT 2 cut(s) 350, 415
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 4 cut(s) 30, 87, 223, 254
TscAI CASTG 2 cut(s) 484, 508
TseFI GTSAC 1 cut(s) 475
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 79, 116
TspRI CASTG 2 cut(s) 484, 508
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 3 cut(s) 54, 427, 458
XapI RAATTY 1 cut(s) 415
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.