Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015025

Physical Location & Seq

Genomic Coordinates Forward (+)

880148 .. 881347

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACAAGTGTTCTTGAGGAGAGTGGAGACCACGCGCGTCTTGTTCTCCTCATCAAGGGCAAACGCACCAAACGTCAGCGTTCTGCGTCTCCTCTTATGATGAACGCTGCTGCAGTATCCAGCGTTTGTAGCGGTGAACGATCATCAGTGGAGGTAAGAGAAGAAGAAGCTGCTGGTGAAGTAGAATTCCAAGGAGCTACCGATGAAGACGAAGATATGGCGAATTGTCTGATCTTGTTGTCGCAAGGACATCAAGCAAAGAGCAGCGACGATCATTTGTCGATGCAGAGAATGGGTTTCTTTAGCAACAAGAAACCGGTGGCTTCTCTAGGGTTAGGGCTAGACGGTGTTTACCAGTGCAAAACGTGTGATAAAAGCTTCCATTCGTTCCAAGCGCTAGGAGGGCACAGGGCTAGTCACAAGAAGCCAAAACTTGGAGCTAGCGTTTTCAAATGCGTCGAGAAGAAAACGGCGTCTGCGTCTACGGTTGAAACAGTGGAAGCTGGAGCCGTAGGAAGCTTTCTTTCCCTACAAGTGACTAGTAGTGATGGTAGCAAGAAACCGGAGAAAACACATGAATGTTCAATCTGCAAGGCCGAGTTTTCTTCAGGACAAGCCTTAGGAGGACATATGAGGAGACATAGAGGTTTAACAATAAACGCAAACGCTACTTCAGCAATCAAAACAGCGATATCATCATCAAGTCATCATCACCATGAAGAATCTATACGGCCAAAGAACTTTCTCCAGTTAGATCTGAATCTTCCAGCACCCGAAGATGAACGATGCTGCGAGAAACCGAAATTCGCGTTTGCATCCAAAGATCAGATTCTTCTCTTCACGGCCGCGTCAAATTCTTTGATTGATTGTCATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

292

Amino Acids

31.53

Weight (kDa)

7.64

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	117 - 143	1.5e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	192 - 215	4.3e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03510
fragaria_vesca	FvH4_6g16820
malus_domestica	MD04G1089100.v1.1 MD12G1107100.v1.1
prunus_persica	Prupe.7G125800_v2.0.a1
pyrus_communis	pycom12g10740
rosa_chinensis	RchiOBHm_Chr3g0470831
rosa_laevigata	RLG00000024242
rosa_multiflora	Rmu_sc0002790.1_g000023
rosa_roxburghii	Rroxscaffold_6G00410500
rosa_rugosa	Rorug03G0113100
rosa_samantha	Rh3AG162700 Rh3BG187800 Rh3CG177800 Rh3DG188000
rosa_wichuraiana	Rw3G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	482
AccII	CGCG	4 cut(s)	35, 37, 809, 848
AciI	CCGC	2 cut(s)	132, 846
AcoI	YGGCCR	2 cut(s)	731, 843
AcsI	RAATTY	3 cut(s)	185, 803, 853
AcuI	CTGAAG	2 cut(s)	591, 657
AcyI	GRCGYC	1 cut(s)	473
AfeI	AGCGCT	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	55, 434
AflIII	ACRYGT	1 cut(s)	365
AgeI	ACCGGT	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	451, 491, 585
AhlI	ACTAGT	1 cut(s)	539
AluBI	AGCT	6 cut(s)	170, 197, 378, 440, 503, 519
AluI	AGCT	6 cut(s)	170, 197, 378, 440, 503, 519
Alw26I	GTCTC	3 cut(s)	21, 93, 631
Aor51HI	AGCGCT	1 cut(s)	396
AoxI	GGCC	3 cut(s)	594, 731, 843
ApeKI	GCWGC	5 cut(s)	107, 110, 170, 264, 789
ApoI	RAATTY	3 cut(s)	185, 803, 853
AsiGI	ACCGGT	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	37, 397
AsuHPI	GGTGA	3 cut(s)	146, 188, 704
AsuNHI	GCTAGC	1 cut(s)	440
AxyI	CCTNAGG	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	408
BarI	GAAGNNNNNNTAC	2 cut(s)	711, 743
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	5 cut(s)	94, 97, 157, 276, 776
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	4 cut(s)	486, 494, 746, 858
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	3 cut(s)	21, 93, 631
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	6 cut(s)	329, 341, 398, 414, 441, 540
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	6 cut(s)	108, 111, 171, 265, 790, 846
BlsI	GCNGC	6 cut(s)	109, 112, 172, 266, 791, 847
BmiI	GGNNCC	1 cut(s)	508
BmsI	GCATC	3 cut(s)	273, 776, 824
BmtI	GCTAGC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	2 cut(s)	525, 731
BpuEI	CTTGAG	1 cut(s)	35
BsaBI	GATNNNNATC	2 cut(s)	759, 870
BsaHI	GRCGYC	1 cut(s)	473
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	190
BsaWI	WCCGGW	2 cut(s)	316, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 434
Bse118I	RCCGGY	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	355, 748
Bse21I	CCTNAGG	1 cut(s)	619
Bse8I	GATNNNNATC	2 cut(s)	759, 870
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	815
BseJI	GATNNNNATC	2 cut(s)	759, 870
BseLI	CCNNNNNNNGG	2 cut(s)	55, 434
BseNI	ACTGG	2 cut(s)	355, 748
BseRI	GAGGAG	4 cut(s)	32, 38, 81, 649
BseSI	GKGCMC	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	843
BseXI	GCAGC	5 cut(s)	94, 97, 157, 276, 776
Bsh1236I	CGCG	4 cut(s)	35, 37, 809, 848
Bsh1285I	CGRYCG	1 cut(s)	846
BshFI	GGCC	3 cut(s)	596, 733, 845
BshTI	ACCGGT	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	846
BsiSI	CCGG	2 cut(s)	317, 563
BslI	CCNNNNNNNGG	2 cut(s)	55, 434
BsmAI	GTCTC	3 cut(s)	21, 93, 631
BsmBI	CGTCTC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	596, 733, 845
Bso31I	GGTCTC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	140, 231, 271, 754, 823
BspACI	CCGC	2 cut(s)	132, 846
BspANI	GGCC	3 cut(s)	596, 733, 845
BspFNI	CGCG	4 cut(s)	35, 37, 809, 848
BspLI	GGNNCC	1 cut(s)	508
BspMAI	CTGCAG	1 cut(s)	115
BspOI	GCTAGC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	355, 748
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	5 cut(s)	140, 231, 271, 754, 823
BssNI	GRCGYC	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	347, 487, 496
Bst6I	CTCTTC	1 cut(s)	842
BstACI	GRCGYC	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	619
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	815
BstFNI	CGCG	4 cut(s)	35, 37, 809, 848
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	2 cut(s)	37, 397
BstKTI	GATC	5 cut(s)	143, 234, 274, 757, 826
BstMAI	GTCTC	3 cut(s)	21, 93, 631
BstMBI	GATC	5 cut(s)	140, 231, 271, 754, 823
BstMCI	CGRYCG	1 cut(s)	846
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 403, 674
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	4 cut(s)	35, 37, 809, 848
BstV1I	GCAGC	5 cut(s)	94, 97, 157, 276, 776
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BstZI	CGGCCG	1 cut(s)	843
Bsu36I	CCTNAGG	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	596, 733, 845
BtsCI	GGATG	1 cut(s)	815
BtsIMutI	CAGTG	3 cut(s)	153, 362, 501
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	2 cut(s)	37, 397
Cfr10I	RCCGGY	1 cut(s)	316
CseI	GACGC	6 cut(s)	26, 75, 445, 462, 468, 837
CspAI	ACCGGT	1 cut(s)	316
CviAII	CATG	2 cut(s)	575, 716
DdeI	CTNAG	1 cut(s)	619
DpnI	GATC	5 cut(s)	142, 233, 273, 756, 825
DpnII	GATC	5 cut(s)	140, 231, 271, 754, 823
EaeI	YGGCCR	2 cut(s)	731, 843
EagI	CGGCCG	1 cut(s)	843
Eam1104I	CTCTTC	1 cut(s)	842
EarI	CTCTTC	1 cut(s)	842
EclXI	CGGCCG	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	693
Eco47III	AGCGCT	1 cut(s)	396
Eco52I	CGGCCG	1 cut(s)	843
Eco57I	CTGAAG	2 cut(s)	591, 657
Eco81I	CCTNAGG	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	185
EcoRV	GATATC	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	578, 719
FaiI	YATR	8 cut(s)	98, 218, 576, 630, 632, 642, 717, 728
FatI	CATG	2 cut(s)	574, 715
FauNDI	CATATG	1 cut(s)	630
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	6 cut(s)	108, 111, 171, 265, 790, 846
FokI	GGATG	1 cut(s)	802
Fsp4HI	GCNGC	6 cut(s)	108, 111, 171, 265, 790, 846
FspBI	CTAG	6 cut(s)	329, 341, 398, 414, 441, 540
GlaI	GCGC	2 cut(s)	36, 396
GluI	GCNGC	6 cut(s)	108, 111, 171, 265, 790, 846
GsuI	CTGGAG	2 cut(s)	525, 731
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	3 cut(s)	596, 733, 845
HapII	CCGG	2 cut(s)	317, 563
HgaI	GACGC	6 cut(s)	26, 75, 445, 462, 468, 837
HhaI	GCGC	2 cut(s)	37, 397
Hin1I	GRCGYC	1 cut(s)	473
Hin1II	CATG	2 cut(s)	578, 719
Hin6I	GCGC	2 cut(s)	35, 395
HinP1I	GCGC	2 cut(s)	35, 395
HindIII	AAGCTT	2 cut(s)	376, 517
HinfI	GANTC	3 cut(s)	722, 760, 829
HpaII	CCGG	2 cut(s)	317, 563
HphI	GGTGA	3 cut(s)	146, 188, 704
Hpy166II	GTNNAC	3 cut(s)	137, 352, 483
Hpy188I	TCNGA	3 cut(s)	231, 759, 828
Hpy188III	TCNNGA	3 cut(s)	14, 460, 609
Hpy8I	GTNNAC	3 cut(s)	137, 352, 483
Hpy99I	CGWCG	2 cut(s)	272, 461
HpyCH4III	ACNGT	3 cut(s)	347, 487, 496
HpyCH4IV	ACGT	2 cut(s)	73, 365
HpyCH4V	TGCA	5 cut(s)	113, 286, 360, 591, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 403, 674
HpyF3I	CTNAG	1 cut(s)	619
HpySE526I	ACGT	2 cut(s)	73, 365
Hsp92I	GRCGYC	1 cut(s)	473
Hsp92II	CATG	2 cut(s)	578, 719
HspAI	GCGC	2 cut(s)	35, 395
Kzo9I	GATC	5 cut(s)	140, 231, 271, 754, 823
LmnI	GCTCC	3 cut(s)	194, 437, 506
Lsp1109I	GCAGC	5 cut(s)	94, 97, 157, 276, 776
LweI	GCATC	3 cut(s)	273, 776, 824
MaeI	CTAG	6 cut(s)	329, 341, 398, 414, 441, 540
MaeII	ACGT	2 cut(s)	73, 365
MaeIII	GTNAC	2 cut(s)	416, 535
MalI	GATC	5 cut(s)	142, 233, 273, 756, 825
MboI	GATC	5 cut(s)	140, 231, 271, 754, 823
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	4 cut(s)	185, 223, 803, 853
MnlI	CCTC	8 cut(s)	10, 59, 102, 145, 395, 617, 627, 638
MseI	TTAA	1 cut(s)	650
MslI	CAYNNNNRTG	2 cut(s)	577, 714
MspI	CCGG	2 cut(s)	317, 563
MvnI	CGCG	4 cut(s)	35, 37, 809, 848
MwoI	GCNNNNNNNGC	3 cut(s)	129, 403, 674
NdeI	CATATG	1 cut(s)	630
NdeII	GATC	5 cut(s)	140, 231, 271, 754, 823
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	578, 719
NlaIV	GGNNCC	1 cut(s)	508
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	416, 535
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 476
PfeI	GAWTC	3 cut(s)	722, 760, 829
PflMI	CCANNNNNTGG	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	316
PkrI	GCNGC	6 cut(s)	109, 112, 172, 266, 791, 847
PspN4I	GGNNCC	1 cut(s)	508
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	754
RseI	CAYNNNNRTG	2 cut(s)	577, 714
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	6 cut(s)	108, 111, 171, 265, 790, 846
Sau3AI	GATC	5 cut(s)	140, 231, 271, 754, 823
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	3 cut(s)	273, 776, 824
SfcI	CTRYAG	1 cut(s)	111
SmiMI	CAYNNNNRTG	2 cut(s)	577, 714
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	4 cut(s)	185, 223, 803, 853
SsiI	CCGC	2 cut(s)	132, 846
SspMI	CTAG	6 cut(s)	329, 341, 398, 414, 441, 540
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	3 cut(s)	347, 487, 496
TaiI	ACGT	2 cut(s)	76, 368
TaqI	TCGA	2 cut(s)	281, 459
TasI	AATT	4 cut(s)	185, 223, 803, 853
TauI	GCSGC	1 cut(s)	848
TfiI	GAWTC	3 cut(s)	722, 760, 829
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	3 cut(s)	153, 362, 501
TseFI	GTSAC	2 cut(s)	416, 535
TseI	GCWGC	5 cut(s)	107, 110, 170, 264, 789
Tsp45I	GTSAC	2 cut(s)	416, 535
TspDTI	ATGAA	5 cut(s)	116, 219, 591, 732, 795
TspRI	CASTG	3 cut(s)	153, 362, 501
Van91I	CCANNNNNTGG	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	3 cut(s)	185, 803, 853
XmiI	GTMKAC	1 cut(s)	482
XspI	CTAG	6 cut(s)	329, 341, 398, 414, 441, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.