Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015025

Physical Location & Seq

Genomic Coordinates Reverse (-)

15459619 .. 15460614

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1089100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGATGATGATGATGGAAGCTGCAGATCACCAAGATCAGGATGAAGCTGCTTTGGGTTCTAAGGATCAGGCTCAGATGATGATCATCAAGGGAAAACGCACAAAACGGCAACGTTTGGCTTCCCCGCTTTCTGCCATAGCTACAACAGCTTCAAGCTCATCAAGTGCAGGCCATGATCATGATCATCTTCAACATCAAGGCCTTGTAGGTCCCAGACCAAGAGATAGTACTGATGTTGTTGGTCCCACAGCCTCACCAGCCACCTCAGCTGATCAATTCACAGAGATCAGTACGGAGGAAAAGGAGGACATGGCGAACTGTTTGATTCTTTTGGCGCAAGGCAATTCCATCCCCAAACCCCAAAACCGTAATTTGGTTACCAACAATAAGGCGGCTTCAGCTGCAGCTTCGGCCGGGTTATATTTGTATCAGTGCAAGACATGTGACCGGTGCTTCCCATCGTTTCAAGCGCTTGGTGGACATAGAGCCAGTCACAAGAAACCTGGTAAGCAGATTAATATTAACAGCACAACGCAAGAAAATAAGAAAGCGTTGTTGTTTGTGGAAGAAGCGGAGGAATTTGATCGGTTTAACAACACAAGCACCATGTTGTCATTACAAATTTCAAATACGGCTTTCAGGGCATTGAGCAGTGCTACTAGTCCTTGTTACAACAACAACAACAAAGCCAATAAGGTTCATGAGTGTTCAGTGTGTGGCGCGGAGTTCACATCTGGTCAAGCTTTAGGGGGTCATATGAGGAGGCATAGAACATTCATAAACACAGCTGCAACAACAACAGCAGTAGCAGCCATGAGTAGTCCTCCTCAGTCTCAATCGGGATCAAAGAGACCACGAAATGTTTTGCAGTTGGATCTTAATCTTCCTGCGCCAGAAGAAGAGTGCCTGCATGAAACCAGTAAGTTTCCCTTTGGCCCCAAGATGGAACAAGTCATCGTCTTCTCTGCCTCTCCTTTGGTGGGTTGCCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

332

Amino Acids

35.81

Weight (kDa)

8.06

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	143 - 168	2.5e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	233 - 257	4e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03510
fragaria_vesca	FvH4_6g16820
malus_domestica	MD04G1089100.v1.1 MD12G1107100.v1.1
prunus_persica	Prupe.7G125800_v2.0.a1
pyrus_communis	pycom12g10740
rosa_chinensis	RchiOBHm_Chr3g0470831
rosa_laevigata	RLG00000024242
rosa_multiflora	Rmu_sc0002790.1_g000023
rosa_roxburghii	Rroxscaffold_6G00410500
rosa_rugosa	Rorug03G0113100
rosa_samantha	Rh3AG162700 Rh3BG187800 Rh3CG177800 Rh3DG188000
rosa_wichuraiana	Rw3G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	722
AciI	CCGC	4 cut(s)	125, 392, 572, 722
AclI	AACGTT	1 cut(s)	112
AclWI	GGATC	3 cut(s)	72, 850, 882
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	2 cut(s)	578, 621
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	229, 292
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	4 cut(s)	37, 373, 943, 980
AflIII	ACRYGT	1 cut(s)	440
AgeI	ACCGGT	1 cut(s)	447
AgsI	TTSAA	4 cut(s)	153, 191, 467, 627
AhlI	ACTAGT	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	502
Alw26I	GTCTC	2 cut(s)	837, 844
AlwI	GGATC	3 cut(s)	72, 850, 882
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	4 cut(s)	169, 199, 411, 934
ApeKI	GCWGC	6 cut(s)	20, 47, 401, 404, 788, 809
ApoI	RAATTY	2 cut(s)	578, 621
AseI	ATTAAT	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	447
AspLEI	GCGC	4 cut(s)	337, 472, 722, 892
AspS9I	GGNCC	3 cut(s)	209, 242, 935
AsuC2I	CCSGG	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	20, 246
AvaII	GGWCC	2 cut(s)	209, 242
BbsI	GAAGAC	1 cut(s)	952
BbvCI	CCTCAGC	1 cut(s)	265
BbvI	GCAGC	6 cut(s)	7, 34, 388, 416, 775, 821
BccI	CCATC	4 cut(s)	7, 356, 466, 937
BceAI	ACGGC	2 cut(s)	122, 648
BciT130I	CCWGG	1 cut(s)	504
BclI	TGATCA	4 cut(s)	81, 175, 181, 271
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	837, 844
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	2 cut(s)	21, 402
BfoI	RGCGCY	1 cut(s)	473
BisI	GCNGC	7 cut(s)	21, 48, 393, 402, 405, 789, 810
BlsI	GCNGC	7 cut(s)	22, 49, 394, 403, 406, 790, 811
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	415, 504
Bme18I	GGWCC	2 cut(s)	209, 242
BmgT120I	GGNCC	3 cut(s)	209, 242, 935
BmiI	GGNNCC	3 cut(s)	211, 244, 937
BmrFI	CCNGG	2 cut(s)	415, 504
BpiI	GAAGAC	1 cut(s)	952
BplI	GAGNNNNNCTC	2 cut(s)	808, 840
Bpu10I	CCTNAGC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	415
BsaBI	GATNNNNATC	4 cut(s)	80, 83, 180, 879
BsaI	GGTCTC	1 cut(s)	844
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 373, 943, 980
Bse118I	RCCGGY	1 cut(s)	447
Bse1I	ACTGG	2 cut(s)	489, 918
Bse8I	GATNNNNATC	4 cut(s)	80, 83, 180, 879
BseBI	CCWGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	46, 348
BseJI	GATNNNNATC	4 cut(s)	80, 83, 180, 879
BseLI	CCNNNNNNNGG	4 cut(s)	37, 373, 943, 980
BseMII	CTCAG	3 cut(s)	86, 279, 842
BseNI	ACTGG	2 cut(s)	489, 918
BseRI	GAGGAG	2 cut(s)	775, 816
BseX3I	CGGCCG	1 cut(s)	411
BseXI	GCAGC	6 cut(s)	7, 34, 388, 416, 775, 821
BsgI	GTGCAG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	722
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	4 cut(s)	171, 201, 413, 936
BshTI	ACCGGT	1 cut(s)	447
BsiEI	CGRYCG	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	414, 448
BslFI	GGGAC	2 cut(s)	195, 228
BslI	CCNNNNNNNGG	4 cut(s)	37, 373, 943, 980
BsmAI	GTCTC	2 cut(s)	837, 844
BsmFI	GGGAC	2 cut(s)	195, 228
BsnI	GGCC	4 cut(s)	171, 201, 413, 936
Bso31I	GGTCTC	1 cut(s)	844
BspACI	CCGC	4 cut(s)	125, 392, 572, 722
BspANI	GGCC	4 cut(s)	171, 201, 413, 936
BspCNI	CTCAG	3 cut(s)	85, 278, 841
BspFNI	CGCG	1 cut(s)	722
BspHI	TCATGA	2 cut(s)	178, 700
BspLI	GGNNCC	3 cut(s)	211, 244, 937
BspMAI	CTGCAG	2 cut(s)	25, 406
BspPI	GGATC	3 cut(s)	72, 850, 882
BspTNI	GGTCTC	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	489, 918
BssAI	RCCGGY	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	320, 368
Bst6I	CTCTTC	1 cut(s)	894
BstC8I	GCNNGC	2 cut(s)	169, 908
BstDEI	CTNAG	4 cut(s)	60, 72, 265, 828
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	46, 348
BstFNI	CGCG	1 cut(s)	722
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	4 cut(s)	337, 472, 722, 892
BstMAI	GTCTC	2 cut(s)	837, 844
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	8 cut(s)	146, 257, 266, 398, 401, 410, 641, 809
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	444
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	413, 502
BstSFI	CTRYAG	2 cut(s)	21, 402
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	6 cut(s)	7, 34, 388, 416, 775, 821
BstV2I	GAAGAC	1 cut(s)	952
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BstZI	CGGCCG	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	171, 201, 413, 936
BtsCI	GGATG	2 cut(s)	46, 348
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	3 cut(s)	437, 658, 717
Cac8I	GCNNGC	2 cut(s)	169, 908
CciI	TCATGA	2 cut(s)	178, 700
CfoI	GCGC	4 cut(s)	337, 472, 722, 892
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	3 cut(s)	209, 242, 935
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	2 cut(s)	228, 291
CspAI	ACCGGT	1 cut(s)	447
CviAII	CATG	8 cut(s)	173, 179, 310, 441, 607, 701, 814, 911
CviQI	GTAC	2 cut(s)	228, 291
DdeI	CTNAG	4 cut(s)	60, 72, 265, 828
EaeI	YGGCCR	1 cut(s)	411
EagI	CGGCCG	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
EclXI	CGGCCG	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	844
Eco47I	GGWCC	2 cut(s)	209, 242
Eco47III	AGCGCT	1 cut(s)	471
Eco52I	CGGCCG	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	381
Eco91I	GGTNACC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	502
FaeI	CATG	8 cut(s)	176, 182, 313, 444, 610, 704, 817, 914
FalI	AAGNNNNNCTT	2 cut(s)	914, 946
FaqI	GGGAC	2 cut(s)	195, 228
FatI	CATG	8 cut(s)	172, 178, 309, 440, 606, 700, 813, 910
FauI	CCCGC	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	756
FbaI	TGATCA	4 cut(s)	81, 175, 181, 271
Fnu4HI	GCNGC	7 cut(s)	21, 48, 393, 402, 405, 789, 810
FokI	GGATG	2 cut(s)	53, 335
Fsp4HI	GCNGC	7 cut(s)	21, 48, 393, 402, 405, 789, 810
FspBI	CTAG	1 cut(s)	660
GlaI	GCGC	4 cut(s)	336, 471, 721, 891
GluI	GCNGC	7 cut(s)	21, 48, 393, 402, 405, 789, 810
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	4 cut(s)	171, 201, 413, 936
HapII	CCGG	2 cut(s)	414, 448
HhaI	GCGC	4 cut(s)	337, 472, 722, 892
Hin1II	CATG	8 cut(s)	176, 182, 313, 444, 610, 704, 817, 914
Hin6I	GCGC	4 cut(s)	335, 470, 720, 890
HinP1I	GCGC	4 cut(s)	335, 470, 720, 890
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	2 cut(s)	414, 448
HphI	GGTGA	2 cut(s)	20, 246
Hpy166II	GTNNAC	2 cut(s)	479, 729
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	4 cut(s)	38, 179, 701, 840
Hpy8I	GTNNAC	2 cut(s)	479, 729
HpyCH4III	ACNGT	2 cut(s)	320, 368
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	7 cut(s)	23, 167, 404, 435, 791, 868, 910
HpyF10VI	GCNNNNNNNGC	8 cut(s)	146, 257, 266, 398, 401, 410, 641, 809
HpyF3I	CTNAG	4 cut(s)	60, 72, 265, 828
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	8 cut(s)	176, 182, 313, 444, 610, 704, 817, 914
HspAI	GCGC	4 cut(s)	335, 470, 720, 890
Ksp22I	TGATCA	4 cut(s)	81, 175, 181, 271
Lsp1109I	GCAGC	6 cut(s)	7, 34, 388, 416, 775, 821
MabI	ACCWGGT	1 cut(s)	502
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	4 cut(s)	376, 443, 491, 668
MboII	GAAGA	6 cut(s)	179, 578, 875, 908, 911, 952
MflI	RGATCY	1 cut(s)	874
MluCI	AATT	5 cut(s)	275, 343, 370, 578, 621
MmeI	TCCRAC	1 cut(s)	852
MseI	TTAA	4 cut(s)	516, 522, 591, 879
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	3 cut(s)	269, 401, 788
MspI	CCGG	2 cut(s)	414, 448
MspR9I	CCNGG	2 cut(s)	415, 504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	8 cut(s)	146, 257, 266, 398, 401, 410, 641, 809
NciI	CCSGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	756
NlaIII	CATG	8 cut(s)	176, 182, 313, 444, 610, 704, 817, 914
NlaIV	GGNNCC	3 cut(s)	211, 244, 937
NmuCI	GTSAC	2 cut(s)	443, 491
NspI	RCATGY	1 cut(s)	444
PagI	TCATGA	2 cut(s)	178, 700
PceI	AGGCCT	1 cut(s)	201
PciI	ACATGT	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	447
PkrI	GCNGC	7 cut(s)	22, 49, 394, 403, 406, 790, 811
PpuMI	RGGWCCY	1 cut(s)	209
PscI	ACATGT	1 cut(s)	440
PshBI	ATTAAT	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	502
PspEI	GGTNACC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	211, 244, 937
PspPI	GGNCC	3 cut(s)	209, 242, 935
PspPPI	RGGWCCY	1 cut(s)	209
PstI	CTGCAG	2 cut(s)	25, 406
PsuI	RGATCY	1 cut(s)	874
PvuII	CAGCTG	3 cut(s)	269, 401, 788
RsaI	GTAC	2 cut(s)	229, 292
RsaNI	GTAC	2 cut(s)	228, 291
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	516, 522, 591, 879
SatI	GCNGC	7 cut(s)	21, 48, 393, 402, 405, 789, 810
Sau96I	GGNCC	3 cut(s)	209, 242, 935
ScaI	AGTACT	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	415, 504
SexAI	ACCWGGT	1 cut(s)	502
SfcI	CTRYAG	2 cut(s)	21, 402
SinI	GGWCC	2 cut(s)	209, 242
SmiMI	CAYNNNNRTG	1 cut(s)	177
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	5 cut(s)	275, 343, 370, 578, 621
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	4 cut(s)	125, 392, 572, 722
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	1 cut(s)	660
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	413, 502
TaaI	ACNGT	2 cut(s)	320, 368
TaiI	ACGT	1 cut(s)	115
TasI	AATT	5 cut(s)	275, 343, 370, 578, 621
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	4 cut(s)	516, 522, 591, 879
Tru9I	TTAA	4 cut(s)	516, 522, 591, 879
TscAI	CASTG	3 cut(s)	437, 658, 717
TseFI	GTSAC	2 cut(s)	443, 491
TseI	GCWGC	6 cut(s)	20, 47, 401, 404, 788, 809
Tsp45I	GTSAC	2 cut(s)	443, 491
TspDTI	ATGAA	4 cut(s)	57, 689, 766, 927
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	3 cut(s)	437, 658, 717
VpaK11BI	GGWCC	2 cut(s)	209, 242
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	2 cut(s)	578, 621
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	1 cut(s)	660
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.