Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0015025

Physical Location & Seq

Genomic Coordinates Forward (+)

32921137 .. 32922081

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATGATGATGATGATGGAGGCTGCAAACCTTGAGGAGGATCAGAACCAGATGATGATCATCAAAGGAAAGCGCACCAAGCGTCCGAGGCTGTCATCTCCGATTGTGTTAACAACGACAGCTTCAAGCTCATCTAGTCCAGGGGGTGGTGATGATGTTGAAGATCATCATCATCATCAATTGGGTATGATTAGTACTCCAATTAGAGTTAGTGATCAAGATGATGAGACAACCGCCTCGCCGGCCACCTCAGCTGAATTCACAGAGATGAGTACTACAGAAGAAGAAGAAGACATGGCAAACTGTTTGATACTTTTGGCTCAGTCGGGTCAGACACAAATCCGAAAAGTTCAAGAACAACAACCACCTATTAAGGCTGTTGCTGCTGCTGATACAGCTCCTGGGTTATATGTGTATGAGTGCAAGACATGTAACAGGTGCTTTTCTTCGTTCCAAGCACTTGGTGGGCATAGAGCAAGTCACAAGAAACCCAAGGCTAGTAATGTCATCAACACAACACAAGCACAGCCGAAGAAAGCGTTGTCGTGTATGGAAGATCAAGATGAGTATGATCGTCGGTTTAACAACAACACAACAAGCACAACGCTTTCGTTACAAATATCGAACAGGGGTTTTGGCAATAGCAAAGGCAACAAGGTTCATGAGTGTTCAGTGTGTGGGGCTGAGTTCAGCTCTGGTCAAGCTCTTGGGGGTCATATGAGGAGGCACAGAACTTCCATGAACTCTACAACAACAGCACCAACATTGAGTAGTCCGCAACCTCAAGCACCTAACAAGAGGCCAAGAAGTGTTTTAGAGTTAGATCTTAATCTTCCTGCGCCAGAAGAAGAGCGGCTCGAAATGACCAAATTGCCATTTTCCAGCTCCAAGAAGGAACAAGTCATTGTCTTCTCTGCCTCTCCTTTGGTGGGATGCCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

314

Amino Acids

34.41

Weight (kDa)

6.37

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	138 - 164	9.6e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	220 - 245	9.4e-13	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03510
fragaria_vesca	FvH4_6g16820
malus_domestica	MD04G1089100.v1.1 MD12G1107100.v1.1
prunus_persica	Prupe.7G125800_v2.0.a1
pyrus_communis	pycom12g10740
rosa_chinensis	RchiOBHm_Chr3g0470831
rosa_laevigata	RLG00000024242
rosa_multiflora	Rmu_sc0002790.1_g000023
rosa_roxburghii	Rroxscaffold_6G00410500
rosa_rugosa	Rorug03G0113100
rosa_samantha	Rh3AG162700 Rh3BG187800 Rh3CG177800 Rh3DG188000
rosa_wichuraiana	Rw3G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	853
AciI	CCGC	3 cut(s)	234, 776, 853
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	2 cut(s)	196, 274
AfiI	CCNNNNNNNGG	3 cut(s)	37, 146, 929
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	126, 161, 353
AjnI	CCWGG	2 cut(s)	139, 400
AluBI	AGCT	7 cut(s)	122, 129, 254, 398, 693, 704, 885
AluI	AGCT	7 cut(s)	122, 129, 254, 398, 693, 704, 885
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	243, 800
ApeKI	GCWGC	3 cut(s)	23, 383, 386
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	75, 841
AsuHPI	GGTGA	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	297, 901
BbvCI	CCTCAGC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	10, 370, 373
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	141, 402
BclI	TGATCA	2 cut(s)	57, 214
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	135, 498
BfmI	CTRYAG	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	4 cut(s)	24, 384, 387, 854
BlsI	GCNGC	4 cut(s)	25, 385, 388, 855
BmcAI	AGTACT	2 cut(s)	196, 274
Bme1390I	CCNGG	2 cut(s)	141, 402
BmrFI	CCNGG	2 cut(s)	141, 402
BmsI	GCATC	1 cut(s)	923
BpiI	GAAGAC	2 cut(s)	297, 901
BplI	GAGNNNNNCTC	2 cut(s)	677, 709
Bpu10I	CCTNAGC	1 cut(s)	250
BpuEI	CTTGAG	2 cut(s)	53, 768
BsaBI	GATNNNNATC	4 cut(s)	56, 59, 168, 828
BsaJI	CCNNGG	4 cut(s)	86, 140, 401, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 146, 929
Bse118I	RCCGGY	1 cut(s)	241
Bse8I	GATNNNNATC	4 cut(s)	56, 59, 168, 828
BseBI	CCWGG	2 cut(s)	141, 402
BseDI	CCNNGG	4 cut(s)	86, 140, 401, 492
BseGI	GGATG	1 cut(s)	938
BseJI	GATNNNNATC	4 cut(s)	56, 59, 168, 828
BseLI	CCNNNNNNNGG	3 cut(s)	37, 146, 929
BseMII	CTCAG	3 cut(s)	264, 335, 675
BseRI	GAGGAG	2 cut(s)	50, 736
BseXI	GCAGC	3 cut(s)	10, 370, 373
BshFI	GGCC	2 cut(s)	245, 802
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	37, 146, 929
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	245, 802
Bsp143I	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
BspACI	CCGC	3 cut(s)	234, 776, 853
BspANI	GGCC	2 cut(s)	245, 802
BspCNI	CTCAG	3 cut(s)	263, 334, 676
BspHI	TCATGA	1 cut(s)	661
BspPI	GGATC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	843
BsrBI	CCGCTC	1 cut(s)	853
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	4 cut(s)	86, 140, 401, 492
BssMI	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	141, 402
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	843
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	250, 321, 684
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	938
BstHHI	GCGC	2 cut(s)	75, 841
BstKTI	GATC	7 cut(s)	43, 60, 166, 217, 559, 574, 826
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 88, 242, 251, 383, 395
BstNI	CCWGG	2 cut(s)	141, 402
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	139, 400
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	10, 370, 373
BstV2I	GAAGAC	2 cut(s)	297, 901
BstX2I	RGATCY	1 cut(s)	823
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	245, 802
BtsCI	GGATG	1 cut(s)	938
BtsIMutI	CAGTG	1 cut(s)	678
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	2 cut(s)	75, 841
Cfr10I	RCCGGY	1 cut(s)	241
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	195, 273
CviAII	CATG	4 cut(s)	295, 429, 662, 739
CviQI	GTAC	2 cut(s)	195, 273
DdeI	CTNAG	3 cut(s)	250, 321, 684
DpnI	GATC	7 cut(s)	42, 59, 165, 216, 558, 573, 825
DpnII	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Eco130I	CCWWGG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	139, 400
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	4 cut(s)	298, 432, 665, 742
FatI	CATG	4 cut(s)	294, 428, 661, 738
FauNDI	CATATG	1 cut(s)	717
FbaI	TGATCA	2 cut(s)	57, 214
Fnu4HI	GCNGC	4 cut(s)	24, 384, 387, 854
Fsp4HI	GCNGC	4 cut(s)	24, 384, 387, 854
FspBI	CTAG	2 cut(s)	135, 498
GlaI	GCGC	2 cut(s)	74, 840
GluI	GCNGC	4 cut(s)	24, 384, 387, 854
HaeIII	GGCC	2 cut(s)	245, 802
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	75, 841
Hin1II	CATG	4 cut(s)	298, 432, 665, 742
Hin6I	GCGC	2 cut(s)	73, 839
HinP1I	GCGC	2 cut(s)	73, 839
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HpaI	GTTAAC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	5 cut(s)	45, 87, 102, 333, 344
Hpy188III	TCNNGA	4 cut(s)	218, 353, 560, 662
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	579
HpyAV	CCTTC	1 cut(s)	886
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	26, 423
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 88, 242, 251, 383, 395
HpyF3I	CTNAG	3 cut(s)	250, 321, 684
Hsp92II	CATG	4 cut(s)	298, 432, 665, 742
HspAI	GCGC	2 cut(s)	73, 839
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	57, 214
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	2 cut(s)	403, 890
Lsp1109I	GCAGC	3 cut(s)	10, 370, 373
LweI	GCATC	1 cut(s)	923
MaeI	CTAG	2 cut(s)	135, 498
MaeIII	GTNAC	3 cut(s)	431, 479, 612
MalI	GATC	7 cut(s)	42, 59, 165, 216, 558, 573, 825
MbiI	CCGCTC	1 cut(s)	853
MboI	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	823
MluCI	AATT	4 cut(s)	179, 201, 257, 869
MroNI	GCCGGC	1 cut(s)	241
MseI	TTAA	4 cut(s)	110, 372, 582, 828
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	141, 402
MunI	CAATTG	1 cut(s)	179
MvaI	CCWGG	2 cut(s)	141, 402
MwoI	GCNNNNNNNGC	6 cut(s)	79, 88, 242, 251, 383, 395
NaeI	GCCGGC	1 cut(s)	243
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	4 cut(s)	298, 432, 665, 742
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	1 cut(s)	432
PagI	TCATGA	1 cut(s)	661
PciI	ACATGT	1 cut(s)	428
PciSI	GCTCTTC	1 cut(s)	843
PdiI	GCCGGC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	4 cut(s)	25, 385, 388, 855
PscI	ACATGT	1 cut(s)	428
Psp6I	CCWGG	2 cut(s)	139, 400
PspGI	CCWGG	2 cut(s)	139, 400
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	196, 274
RsaNI	GTAC	2 cut(s)	195, 273
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	4 cut(s)	110, 372, 582, 828
SatI	GCNGC	4 cut(s)	24, 384, 387, 854
Sau3AI	GATC	7 cut(s)	40, 57, 163, 214, 556, 571, 823
ScaI	AGTACT	2 cut(s)	196, 274
ScrFI	CCNGG	2 cut(s)	141, 402
SfaNI	GCATC	1 cut(s)	923
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	32, 783
SmoI	CTYRAG	2 cut(s)	32, 783
Sse9I	AATT	4 cut(s)	179, 201, 257, 869
SsiI	CCGC	3 cut(s)	234, 776, 853
SspMI	CTAG	2 cut(s)	135, 498
StyD4I	CCNGG	2 cut(s)	139, 400
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	623, 858
TasI	AATT	4 cut(s)	179, 201, 257, 869
TatI	WGTACW	2 cut(s)	194, 272
TauI	GCSGC	1 cut(s)	856
Tru1I	TTAA	4 cut(s)	110, 372, 582, 828
Tru9I	TTAA	4 cut(s)	110, 372, 582, 828
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	3 cut(s)	23, 383, 386
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	2 cut(s)	650, 755
TspRI	CASTG	1 cut(s)	678
Van91I	CCANNNNNTGG	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XspI	CTAG	2 cut(s)	135, 498
ZrmI	AGTACT	2 cut(s)	196, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.