Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015025

Physical Location & Seq

Genomic Coordinates Forward (+)

33410332 .. 33411282

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024242

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGATGATGATGATGATGGAGGCTGCAAACCTTGAGGAGGATCAGAACCAGATGATGATCATCAAAGGGAAGCGCACCAAGCGTCCGAGGCTGTCATCTCCGATTGTGTTAACAACGACAGCTTCAAGCTCATCTAGTCCAGGTGGTGGTGATGATGTTGAAGATCATCATCATCATCATCATCAATTGGGTATGATTAGTACTCCAATTAGAGTTAGTGATCAAGATGATGAGACAACCGCCTCGCCGGCCACCTCAGCTGAATTCACAGAGATGAGCACTACAGAAGAAGAAGAAGACATGGCAAACTGTTTGATACTTTTGGCTCAGTCGGGTCAGACACAAATCCGAAAAGTTCAAGAACAACAACAACCTATTAAGGCTGTTGCTGCTGCTGATACAGCTCCTGGGTTATATGTGTATGAGTGCAAGACATGTAACAGGTGCTTTTCTTCGTTCCAAGCACTTGGTGGGCATAGAGCAAGTCACAAGAAACCCAAGGCTAGTAATGTCATCAACACAACACAAGCACAGCCGAAGAAAGCTTTGTCGTGTATGGAAGATCAAGATGAGTATGATCGTCGTTTTAACAACAACACAACAAGCACAACGCTTTCGTTACAAATATCGAACAGGGGTTTTGGCAATAGCAAAGGCAACAAGGTTCATGAGTGTTCAGTGTGTGGGGCTGAGTTCAGCTCTGGTCAAGCTCTTGGGGGTCATATGAGGAGGCACAGAACTTTCATGAACTCTACAACAACAGCACCAACATTGAGTAGTCCGCAACCTCAAGCACCTGACAAGAAGCCTAGAAGTGTTTTAGAGTTGGATCTTAATCTTCCTGCGCCAGAAGAAGAGCGGCTCGAAATGACCAAATTGCCATTTTCCAGCTCCAAGAAGGAACAAGTCATTGTCTTCTCTGCCTCTCCTTTGGTGGGATGCCATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

317

Amino Acids

34.75

Weight (kDa)

6.31

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	140 - 166	9.7e-11	C2H2-type zinc finger
zf-C2H2_6	PF13912	222 - 246	1.4e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03510
fragaria_vesca	FvH4_6g16820
malus_domestica	MD04G1089100.v1.1 MD12G1107100.v1.1
prunus_persica	Prupe.7G125800_v2.0.a1
pyrus_communis	pycom12g10740
rosa_chinensis	RchiOBHm_Chr3g0470831
rosa_laevigata	RLG00000024242
rosa_multiflora	Rmu_sc0002790.1_g000023
rosa_roxburghii	Rroxscaffold_6G00410500
rosa_rugosa	Rorug03G0113100
rosa_samantha	Rh3AG162700 Rh3BG187800 Rh3CG177800 Rh3DG188000
rosa_wichuraiana	Rw3G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	859
AciI	CCGC	3 cut(s)	240, 782, 859
AclWI	GGATC	2 cut(s)	48, 837
AcoI	YGGCCR	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	263
AdeI	CACNNNGTG	1 cut(s)	470
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	37, 146, 935
AflIII	ACRYGT	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	126, 161, 359
AjnI	CCWGG	2 cut(s)	139, 406
AluBI	AGCT	8 cut(s)	122, 129, 260, 404, 545, 699, 710, 891
AluI	AGCT	8 cut(s)	122, 129, 260, 404, 545, 699, 710, 891
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	48, 837
AlwNI	CAGNNNCTG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	23, 389, 392
ApoI	RAATTY	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	75, 847
AsuHPI	GGTGA	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	303, 907
Bbv12I	GWGCWC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	256
BbvI	GCAGC	3 cut(s)	10, 376, 379
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	141, 408
BclI	TGATCA	2 cut(s)	57, 220
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	3 cut(s)	135, 504, 810
BfmI	CTRYAG	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	24, 390, 393, 860
BlsI	GCNGC	4 cut(s)	25, 391, 394, 861
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	141, 408
BmrFI	CCNGG	2 cut(s)	141, 408
BmsI	GCATC	1 cut(s)	929
BpiI	GAAGAC	2 cut(s)	303, 907
BplI	GAGNNNNNCTC	2 cut(s)	683, 715
Bpu10I	CCTNAGC	1 cut(s)	256
BpuEI	CTTGAG	2 cut(s)	53, 774
BsaBI	GATNNNNATC	4 cut(s)	56, 59, 168, 834
BsaJI	CCNNGG	3 cut(s)	86, 407, 498
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 146, 935
Bse118I	RCCGGY	1 cut(s)	247
Bse8I	GATNNNNATC	4 cut(s)	56, 59, 168, 834
BseBI	CCWGG	2 cut(s)	141, 408
BseDI	CCNNGG	3 cut(s)	86, 407, 498
BseGI	GGATG	1 cut(s)	944
BseJI	GATNNNNATC	4 cut(s)	56, 59, 168, 834
BseLI	CCNNNNNNNGG	3 cut(s)	37, 146, 935
BseMII	CTCAG	3 cut(s)	270, 341, 681
BseRI	GAGGAG	2 cut(s)	50, 742
BseXI	GCAGC	3 cut(s)	10, 376, 379
BshFI	GGCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	37, 146, 935
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
BspACI	CCGC	3 cut(s)	240, 782, 859
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	3 cut(s)	269, 340, 682
BspHI	TCATGA	2 cut(s)	667, 744
BspPI	GGATC	2 cut(s)	48, 837
BspQI	GCTCTTC	1 cut(s)	849
BsrBI	CCGCTC	1 cut(s)	859
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	86, 407, 498
BssMI	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	141, 408
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	849
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	256, 327, 690
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	944
BstHHI	GCGC	2 cut(s)	75, 847
BstKTI	GATC	7 cut(s)	43, 60, 166, 223, 565, 580, 832
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 88, 248, 257, 389, 401
BstNI	CCWGG	2 cut(s)	141, 408
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	139, 406
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	10, 376, 379
BstV2I	GAAGAC	2 cut(s)	303, 907
BstX2I	RGATCY	1 cut(s)	829
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	829
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	944
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	407
CciI	TCATGA	2 cut(s)	667, 744
CfoI	GCGC	2 cut(s)	75, 847
Cfr10I	RCCGGY	1 cut(s)	247
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	4 cut(s)	301, 435, 668, 745
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	3 cut(s)	256, 327, 690
DpnI	GATC	7 cut(s)	42, 59, 165, 222, 564, 579, 831
DpnII	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
DraIII	CACNNNGTG	1 cut(s)	470
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	498
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	139, 406
EcoT14I	CCWWGG	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	4 cut(s)	304, 438, 671, 748
FatI	CATG	4 cut(s)	300, 434, 667, 744
FauNDI	CATATG	1 cut(s)	723
FbaI	TGATCA	2 cut(s)	57, 220
Fnu4HI	GCNGC	4 cut(s)	24, 390, 393, 860
Fsp4HI	GCNGC	4 cut(s)	24, 390, 393, 860
FspBI	CTAG	3 cut(s)	135, 504, 810
GlaI	GCGC	2 cut(s)	74, 846
GluI	GCNGC	4 cut(s)	24, 390, 393, 860
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	75, 847
Hin1II	CATG	4 cut(s)	304, 438, 671, 748
Hin6I	GCGC	2 cut(s)	73, 845
HinP1I	GCGC	2 cut(s)	73, 845
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	543
HpaI	GTTAAC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	5 cut(s)	45, 87, 102, 339, 350
Hpy188III	TCNNGA	5 cut(s)	224, 359, 566, 668, 745
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	585
HpyAV	CCTTC	1 cut(s)	892
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	26, 429
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 88, 248, 257, 389, 401
HpyF3I	CTNAG	3 cut(s)	256, 327, 690
Hsp92II	CATG	4 cut(s)	304, 438, 671, 748
HspAI	GCGC	2 cut(s)	73, 845
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Ksp22I	TGATCA	2 cut(s)	57, 220
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
LguI	GCTCTTC	1 cut(s)	849
LmnI	GCTCC	2 cut(s)	409, 896
Lsp1109I	GCAGC	3 cut(s)	10, 376, 379
LweI	GCATC	1 cut(s)	929
MaeI	CTAG	3 cut(s)	135, 504, 810
MaeIII	GTNAC	3 cut(s)	437, 485, 618
MalI	GATC	7 cut(s)	42, 59, 165, 222, 564, 579, 831
MbiI	CCGCTC	1 cut(s)	859
MboI	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
MfeI	CAATTG	1 cut(s)	185
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	4 cut(s)	185, 207, 263, 875
MmeI	TCCRAC	1 cut(s)	807
MroNI	GCCGGC	1 cut(s)	247
MseI	TTAA	4 cut(s)	110, 378, 588, 834
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	141, 408
MunI	CAATTG	1 cut(s)	185
MvaI	CCWGG	2 cut(s)	141, 408
MwoI	GCNNNNNNNGC	6 cut(s)	79, 88, 248, 257, 389, 401
NaeI	GCCGGC	1 cut(s)	249
NdeI	CATATG	1 cut(s)	723
NdeII	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
NgoMIV	GCCGGC	1 cut(s)	247
NlaIII	CATG	4 cut(s)	304, 438, 671, 748
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	438
PagI	TCATGA	2 cut(s)	667, 744
PciI	ACATGT	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	849
PdiI	GCCGGC	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	4 cut(s)	25, 391, 394, 861
PscI	ACATGT	1 cut(s)	434
Psp6I	CCWGG	2 cut(s)	139, 406
PspGI	CCWGG	2 cut(s)	139, 406
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	829
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	849
SaqAI	TTAA	4 cut(s)	110, 378, 588, 834
SatI	GCNGC	4 cut(s)	24, 390, 393, 860
Sau3AI	GATC	7 cut(s)	40, 57, 163, 220, 562, 577, 829
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	2 cut(s)	141, 408
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	929
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	32, 789
SmoI	CTYRAG	2 cut(s)	32, 789
Sse9I	AATT	4 cut(s)	185, 207, 263, 875
SsiI	CCGC	3 cut(s)	240, 782, 859
SspMI	CTAG	3 cut(s)	135, 504, 810
StyD4I	CCNGG	2 cut(s)	139, 406
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	2 cut(s)	629, 864
TasI	AATT	4 cut(s)	185, 207, 263, 875
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	862
Tru1I	TTAA	4 cut(s)	110, 378, 588, 834
Tru9I	TTAA	4 cut(s)	110, 378, 588, 834
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	3 cut(s)	23, 389, 392
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	3 cut(s)	656, 733, 761
TspRI	CASTG	1 cut(s)	684
Van91I	CCANNNNNTGG	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XspI	CTAG	3 cut(s)	135, 504, 810
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.