Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015025

Physical Location & Seq

Genomic Coordinates Reverse (-)

16932324 .. 16933313

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1107100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGATGATGATGGAAGCTGCAGATCATCAAGATCAGGAGGAAGCTGTTTTAGGTTATAAGGATCAGGCTCAGATGATGATCATCAAGGGAAAACGCACAAAACGGCAACGTTTGACTTCCCCACTTTCTGCCATAGCCACAACAGCTTCAAGCTCATCAAGTGCAGGCCATGATCATGATCATCTTCAAGACCAAGGCCTTTTGGGTCCCAGACAAAGGATTAGTACTGATGTTGGTCCCACAGCCTCACCAGCCACCTCATCTGATCAATTCACAGAGATCAGTACGGAGGAAGAGGAGGACATGGCAAACTGTTTGATTCTTCTGGCGCAAGGCAATTCTACCCCAAAACCCCAAAACCCTAATTTGGTTAACAACAATAAGGCGGCTTCAGCAGCAGCTTCGGCCGGGTTATATTTGTATCAGTGCAAGACGTGTGACCGGTGCTTCCCGTCGTTTCAAGCGCTTGGTGGACATAGAGCCAGTCACAGGAAACCGGGTAAGCAGGCTAACATTCACAGCACAATTCAAGACAATAAGAAAGCGTTGTCATTCTTGGAAGAAGTGGAGGAATTTGATCAGTTTAACAACACCAGCACCACGTTGTCATTACAAATTTCGAATAGGGCTTTCAGGGCATTGAACAGTGATACTACTAGTCCTTGTTATTACAAAAACAAAGCCAATAAGGTTCATGAGTGTTCGGTGTGTGGTGCGGAGTTCGCATCTGGTCAAGCTCTAGGGGGTCATATGAGAAGGCATAGAACATTAAGCAGCACAGCAGCAACAACAGCAGCAGCAGAAGCCATGAATAGTCATCCTCAGTCGCAATCGGGATCAAAGAGACCACGAAATGTTTTGCAGTTGGATCTTAATCTTCCTGCGCCGGAAGAAGAGCACCAGCAGGAAACCAATAAGTTTCCCTTTGGAGCCAAGAAGGAACAAGTCATCGTCTTCTCTGCCTCTCCTTTGGTGGGTTGCCAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

330

Amino Acids

35.83

Weight (kDa)

6.86

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	141 - 166	6e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	231 - 255	2.6e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03510
fragaria_vesca	FvH4_6g16820
malus_domestica	MD04G1089100.v1.1 MD12G1107100.v1.1
prunus_persica	Prupe.7G125800_v2.0.a1
pyrus_communis	pycom12g10740
rosa_chinensis	RchiOBHm_Chr3g0470831
rosa_laevigata	RLG00000024242
rosa_multiflora	Rmu_sc0002790.1_g000023
rosa_roxburghii	Rroxscaffold_6G00410500
rosa_rugosa	Rorug03G0113100
rosa_samantha	Rh3AG162700 Rh3BG187800 Rh3CG177800 Rh3DG188000
rosa_wichuraiana	Rw3G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AciI	CCGC	2 cut(s)	386, 716
AclI	AACGTT	1 cut(s)	109
AclWI	GGATC	3 cut(s)	69, 844, 876
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	572, 615
AcuI	CTGAAG	1 cut(s)	375
AfaI	GTAC	2 cut(s)	226, 286
AfeI	AGCGCT	1 cut(s)	465
AfiI	CCNNNNNNNGG	4 cut(s)	216, 367, 489, 974
AflIII	ACRYGT	1 cut(s)	434
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	5 cut(s)	150, 188, 461, 530, 643
AhlI	ACTAGT	1 cut(s)	656
AjiI	CACGTC	1 cut(s)	435
AluBI	AGCT	6 cut(s)	17, 44, 146, 153, 401, 737
AluI	AGCT	6 cut(s)	17, 44, 146, 153, 401, 737
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	3 cut(s)	69, 844, 876
Aor51HI	AGCGCT	1 cut(s)	465
AoxI	GGCC	3 cut(s)	166, 196, 405
ApeKI	GCWGC	7 cut(s)	17, 395, 398, 774, 782, 794, 797
ApoI	RAATTY	2 cut(s)	572, 615
AsiGI	ACCGGT	1 cut(s)	441
AspLEI	GCGC	3 cut(s)	331, 466, 886
AspS9I	GGNCC	2 cut(s)	206, 236
AsuC2I	CCSGG	2 cut(s)	409, 498
AsuHPI	GGTGA	1 cut(s)	240
AsuII	TTCGAA	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	206, 236
BbsI	GAAGAC	1 cut(s)	946
Bbv12I	GWGCWC	1 cut(s)	900
BbvI	GCAGC	7 cut(s)	4, 407, 410, 786, 794, 806, 809
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	384, 418
BclI	TGATCA	5 cut(s)	78, 172, 178, 265, 577
BcnI	CCSGG	2 cut(s)	409, 498
BcoDI	GTCTC	1 cut(s)	838
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	2 cut(s)	657, 740
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	467
BisI	GCNGC	8 cut(s)	18, 387, 396, 399, 775, 783, 795, 798
BlsI	GCNGC	8 cut(s)	19, 388, 397, 400, 776, 784, 796, 799
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	409, 498
Bme18I	GGWCC	2 cut(s)	206, 236
BmgBI	CACGTC	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	206, 236
BmiI	GGNNCC	4 cut(s)	207, 208, 238, 931
BmrFI	CCNGG	2 cut(s)	409, 498
BmsI	GCATC	1 cut(s)	734
BpiI	GAAGAC	1 cut(s)	946
Bpu14I	TTCGAA	1 cut(s)	620
BpuMI	CCSGG	2 cut(s)	409, 498
BsaBI	GATNNNNATC	4 cut(s)	77, 80, 177, 873
BsaI	GGTCTC	1 cut(s)	838
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 367, 489, 974
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	483
Bse8I	GATNNNNATC	4 cut(s)	77, 80, 177, 873
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	817
BseJI	GATNNNNATC	4 cut(s)	77, 80, 177, 873
BseLI	CCNNNNNNNGG	4 cut(s)	216, 367, 489, 974
BseMII	CTCAG	2 cut(s)	83, 836
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	1 cut(s)	311
BseX3I	CGGCCG	1 cut(s)	405
BseXI	GCAGC	7 cut(s)	4, 407, 410, 786, 794, 806, 809
BsgI	GTGCAG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	168, 198, 407
BshTI	ACCGGT	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	900
BsiSI	CCGG	4 cut(s)	408, 442, 497, 887
BslFI	GGGAC	2 cut(s)	192, 222
BslI	CCNNNNNNNGG	4 cut(s)	216, 367, 489, 974
BsmAI	GTCTC	1 cut(s)	838
BsmFI	GGGAC	2 cut(s)	192, 222
BsnI	GGCC	3 cut(s)	168, 198, 407
Bso31I	GGTCTC	1 cut(s)	838
Bsp119I	TTCGAA	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	900
BspACI	CCGC	2 cut(s)	386, 716
BspANI	GGCC	3 cut(s)	168, 198, 407
BspCNI	CTCAG	2 cut(s)	82, 835
BspHI	TCATGA	2 cut(s)	175, 694
BspLI	GGNNCC	4 cut(s)	207, 208, 238, 931
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	3 cut(s)	69, 844, 876
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	838
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	483
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	314, 647
Bst6I	CTCTTC	2 cut(s)	288, 888
BstBI	TTCGAA	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	166, 507
BstDEI	CTNAG	2 cut(s)	69, 822
BstF5I	GGATG	1 cut(s)	817
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	3 cut(s)	331, 466, 886
BstMAI	GTCTC	1 cut(s)	838
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	9 cut(s)	143, 251, 392, 395, 404, 635, 722, 791, 803
BstSCI	CCNGG	2 cut(s)	407, 496
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	7 cut(s)	4, 407, 410, 786, 794, 806, 809
BstV2I	GAAGAC	1 cut(s)	946
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
BstZI	CGGCCG	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	168, 198, 407
BtrI	CACGTC	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	817
BtsIMutI	CAGTG	2 cut(s)	431, 652
Cac8I	GCNNGC	2 cut(s)	166, 507
CciI	TCATGA	2 cut(s)	175, 694
CfoI	GCGC	3 cut(s)	331, 466, 886
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	2 cut(s)	206, 236
Csp6I	GTAC	2 cut(s)	225, 285
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	5 cut(s)	170, 176, 304, 695, 808
CviQI	GTAC	2 cut(s)	225, 285
DdeI	CTNAG	2 cut(s)	69, 822
EaeI	YGGCCR	1 cut(s)	405
EagI	CGGCCG	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	288, 888
EarI	CTCTTC	2 cut(s)	288, 888
EclXI	CGGCCG	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	206, 236
Eco47III	AGCGCT	1 cut(s)	465
Eco52I	CGGCCG	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	5 cut(s)	173, 179, 307, 698, 811
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FaqI	GGGAC	2 cut(s)	192, 222
FatI	CATG	5 cut(s)	169, 175, 303, 694, 807
FauNDI	CATATG	1 cut(s)	750
FbaI	TGATCA	5 cut(s)	78, 172, 178, 265, 577
Fnu4HI	GCNGC	8 cut(s)	18, 387, 396, 399, 775, 783, 795, 798
FokI	GGATG	1 cut(s)	804
Fsp4HI	GCNGC	8 cut(s)	18, 387, 396, 399, 775, 783, 795, 798
FspBI	CTAG	2 cut(s)	657, 740
GlaI	GCGC	3 cut(s)	330, 465, 885
GluI	GCNGC	8 cut(s)	18, 387, 396, 399, 775, 783, 795, 798
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	3 cut(s)	168, 198, 407
HapII	CCGG	4 cut(s)	408, 442, 497, 887
HhaI	GCGC	3 cut(s)	331, 466, 886
Hin1II	CATG	5 cut(s)	173, 179, 307, 698, 811
Hin6I	GCGC	3 cut(s)	329, 464, 884
HinP1I	GCGC	3 cut(s)	329, 464, 884
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	319
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	4 cut(s)	408, 442, 497, 887
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	2 cut(s)	373, 473
Hpy188I	TCNGA	2 cut(s)	72, 265
Hpy188III	TCNNGA	7 cut(s)	29, 35, 176, 188, 530, 695, 834
Hpy8I	GTNNAC	2 cut(s)	373, 473
Hpy99I	CGWCG	1 cut(s)	457
HpyAV	CCTTC	2 cut(s)	750, 931
HpyCH4III	ACNGT	2 cut(s)	314, 647
HpyCH4IV	ACGT	3 cut(s)	109, 434, 602
HpyCH4V	TGCA	4 cut(s)	20, 164, 429, 862
HpyF10VI	GCNNNNNNNGC	9 cut(s)	143, 251, 392, 395, 404, 635, 722, 791, 803
HpyF3I	CTNAG	2 cut(s)	69, 822
HpySE526I	ACGT	3 cut(s)	109, 434, 602
Hsp92II	CATG	5 cut(s)	173, 179, 307, 698, 811
HspAI	GCGC	3 cut(s)	329, 464, 884
KflI	GGGWCCC	1 cut(s)	206
Ksp22I	TGATCA	5 cut(s)	78, 172, 178, 265, 577
KspAI	GTTAAC	1 cut(s)	373
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	1 cut(s)	929
Lsp1109I	GCAGC	7 cut(s)	4, 407, 410, 786, 794, 806, 809
LweI	GCATC	1 cut(s)	734
MaeI	CTAG	2 cut(s)	657, 740
MaeII	ACGT	3 cut(s)	109, 434, 602
MaeIII	GTNAC	2 cut(s)	437, 485
MboII	GAAGA	8 cut(s)	176, 305, 314, 572, 869, 902, 905, 946
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	1 cut(s)	900
MluCI	AATT	6 cut(s)	269, 337, 364, 525, 572, 615
MmeI	TCCRAC	1 cut(s)	846
MnlI	CCTC	9 cut(s)	31, 256, 268, 283, 289, 292, 562, 831, 973
MseI	TTAA	4 cut(s)	372, 585, 770, 873
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	4 cut(s)	408, 442, 497, 887
MspR9I	CCNGG	2 cut(s)	409, 498
MwoI	GCNNNNNNNGC	9 cut(s)	143, 251, 392, 395, 404, 635, 722, 791, 803
NciI	CCSGG	2 cut(s)	409, 498
NdeI	CATATG	1 cut(s)	750
NlaIII	CATG	5 cut(s)	173, 179, 307, 698, 811
NlaIV	GGNNCC	4 cut(s)	207, 208, 238, 931
NmuCI	GTSAC	2 cut(s)	437, 485
NspV	TTCGAA	1 cut(s)	620
PagI	TCATGA	2 cut(s)	175, 694
PceI	AGGCCT	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	888
PfeI	GAWTC	1 cut(s)	319
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	8 cut(s)	19, 388, 397, 400, 776, 784, 796, 799
PpuMI	RGGWCCY	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	57
Psp1406I	AACGTT	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	207, 208, 238, 931
PspPI	GGNCC	2 cut(s)	206, 236
PspPPI	RGGWCCY	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	868
RsaI	GTAC	2 cut(s)	226, 286
RsaNI	GTAC	2 cut(s)	225, 285
RseI	CAYNNNNRTG	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	4 cut(s)	372, 585, 770, 873
SatI	GCNGC	8 cut(s)	18, 387, 396, 399, 775, 783, 795, 798
Sau96I	GGNCC	2 cut(s)	206, 236
ScaI	AGTACT	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	409, 498
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	1 cut(s)	734
SfcI	CTRYAG	1 cut(s)	18
SfuI	TTCGAA	1 cut(s)	620
SinI	GGWCC	2 cut(s)	206, 236
SmiMI	CAYNNNNRTG	1 cut(s)	174
SpeI	ACTAGT	1 cut(s)	656
Sse9I	AATT	6 cut(s)	269, 337, 364, 525, 572, 615
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	2 cut(s)	386, 716
SspMI	CTAG	2 cut(s)	657, 740
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	2 cut(s)	407, 496
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	314, 647
TaiI	ACGT	3 cut(s)	112, 437, 605
TaqI	TCGA	1 cut(s)	620
TasI	AATT	6 cut(s)	269, 337, 364, 525, 572, 615
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	4 cut(s)	372, 585, 770, 873
Tru9I	TTAA	4 cut(s)	372, 585, 770, 873
TscAI	CASTG	2 cut(s)	431, 652
TseFI	GTSAC	2 cut(s)	437, 485
TseI	GCWGC	7 cut(s)	17, 395, 398, 774, 782, 794, 797
Tsp45I	GTSAC	2 cut(s)	437, 485
TspDTI	ATGAA	2 cut(s)	683, 824
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	2 cut(s)	431, 652
VpaK11BI	GGWCC	2 cut(s)	206, 236
XapI	RAATTY	2 cut(s)	572, 615
XspI	CTAG	2 cut(s)	657, 740
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.