Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015025

Physical Location & Seq

Genomic Coordinates Reverse (-)

14759738 .. 14760721

Gene Structure 984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G125800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATGATCATCAAAGGCAAACGCACCAAACGGCAGAGGCTGGCTTCTCCGCTTGCTCATGCCTCAACAGCAACAGCTTCAAGCTCATCTAGTGCAGGTCATGATCATCAACATCAAGTCCTTGTTGGTCCCACAGAAACCTCACCAGCCACCTCAGCTGATCAATTCACAGAGATCAGTACAGAAGAAGAGGAGGACATGGCAAACTGTTTGATTCTTTTGGCTCAAGGAAATTCAACGCCCAAAACCCAACACCCCATATTGGTTCACAACAATAAGGCTTCAGCTTCAGCTGGGTTATATGTTTACCAGTGCAAGACATGTGACCGGTGCTTCTCTTCGTTCCAAGCTCTCGGTGGACACAGAGCCAGTCACAAGAAACCCAACAAGGCTAACATGAACATCACACAGGACAACAAGAAAGCCTTGTCGTTCGTGGAAGAAGCGGAGGAGTATGATCGGTTTAACAACACGAGCACCACCCTTTCGTTACAAATATCGAATCGGGATTACAGGGCATCGAGCAGTGCTGCTACTCCTGTTAATAACAGCAAAGCCAATAAGGTTCATGAGTGTTCAGTTTGTGGTGCTGAGTTCACATCTGGTCAAGCTTTAGGGGGTCATATGAGGAGGCACAGAACATTTATGAACACAACAACAACAGCAACAGCAGCAGCTATGAGTTCTCCGCAGCCACAATCAGGATCAAAGAGACCAAGAAGTATTTTGCAGTTGGATCTTAATCTTCCTGCACCAGAAGAAGAACGCCTCGAAACCAAGTTTCCCTTTGGCCCCAAGAAGGAACAAGTCATTGTCTTCTCTACCTCTCCTTTGGTGGGTTGCCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

284

Amino Acids

30.8

Weight (kDa)

8.94

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03510
fragaria_vesca	FvH4_6g16820
malus_domestica	MD04G1089100.v1.1 MD12G1107100.v1.1
prunus_persica	Prupe.7G125800_v2.0.a1
pyrus_communis	pycom12g10740
rosa_chinensis	RchiOBHm_Chr3g0470831
rosa_laevigata	RLG00000024242
rosa_multiflora	Rmu_sc0002790.1_g000023
rosa_roxburghii	Rroxscaffold_6G00410500
rosa_rugosa	Rorug03G0113100
rosa_samantha	Rh3AG162700 Rh3BG187800 Rh3CG177800 Rh3DG188000
rosa_wichuraiana	Rw3G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AciI	CCGC	3 cut(s)	50, 446, 689
AclWI	GGATC	2 cut(s)	712, 744
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	2 cut(s)	267, 273
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	4 cut(s)	262, 701, 799, 836
AflIII	ACRYGT	1 cut(s)	320
AgeI	ACCGGT	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	81, 237
AluBI	AGCT	8 cut(s)	77, 84, 158, 287, 293, 350, 611, 677
AluI	AGCT	8 cut(s)	77, 84, 158, 287, 293, 350, 611, 677
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	706
AlwI	GGATC	2 cut(s)	712, 744
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	1 cut(s)	790
ApeKI	GCWGC	4 cut(s)	530, 671, 674, 691
ApoI	RAATTY	1 cut(s)	232
AsiGI	ACCGGT	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	128, 791
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	128
BauI	CACGAG	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	479
BbvCI	CCTCAGC	1 cut(s)	154
BbvI	GCAGC	4 cut(s)	517, 683, 686, 703
BceAI	ACGGC	1 cut(s)	47
BclI	TGATCA	3 cut(s)	6, 103, 160
BcoDI	GTCTC	1 cut(s)	706
BfaI	CTAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	4 cut(s)	531, 672, 675, 692
BlsI	GCNGC	4 cut(s)	532, 673, 676, 693
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 791
BmiI	GGNNCC	2 cut(s)	130, 793
BmsI	GCATC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	808
Bpu10I	CCTNAGC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	210
BsaBI	GATNNNNATC	2 cut(s)	8, 741
BsaI	GGTCTC	1 cut(s)	706
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 701, 799, 836
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	310, 369
Bse8I	GATNNNNATC	2 cut(s)	8, 741
BseJI	GATNNNNATC	2 cut(s)	8, 741
BseLI	CCNNNNNNNGG	4 cut(s)	262, 701, 799, 836
BseMII	CTCAG	2 cut(s)	168, 582
BseNI	ACTGG	2 cut(s)	310, 369
BseRI	GAGGAG	3 cut(s)	206, 464, 643
BseXI	GCAGC	4 cut(s)	517, 683, 686, 703
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	2 cut(s)	114, 735
BshFI	GGCC	1 cut(s)	792
BshTI	ACCGGT	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	479
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	4 cut(s)	262, 701, 799, 836
BsmAI	GTCTC	1 cut(s)	706
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	792
Bso31I	GGTCTC	1 cut(s)	706
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
BspACI	CCGC	3 cut(s)	50, 446, 689
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	2 cut(s)	167, 583
BspHI	TCATGA	2 cut(s)	100, 568
BspLI	GGNNCC	2 cut(s)	130, 793
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	2 cut(s)	712, 744
BspTNI	GGTCTC	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	310, 369
BssAI	RCCGGY	1 cut(s)	327
BssMI	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
BssSI	CACGAG	1 cut(s)	472
Bst2BI	CACGAG	1 cut(s)	472
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	2 cut(s)	183, 343
BstC8I	GCNNGC	2 cut(s)	42, 54
BstDEI	CTNAG	2 cut(s)	154, 591
BstKTI	GATC	7 cut(s)	9, 106, 163, 177, 460, 707, 739
BstMAI	GTCTC	1 cut(s)	706
BstMBI	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 155, 671
BstNSI	RCATGY	1 cut(s)	324
BstV1I	GCAGC	4 cut(s)	517, 683, 686, 703
BstV2I	GAAGAC	1 cut(s)	808
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	1 cut(s)	792
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	317, 532
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	42, 54
CaiI	CAGNNNCTG	1 cut(s)	40
CciI	TCATGA	2 cut(s)	100, 568
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	128, 791
Csp6I	GTAC	1 cut(s)	180
CspAI	ACCGGT	1 cut(s)	327
CviAII	CATG	6 cut(s)	59, 101, 199, 321, 397, 569
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	154, 591
DpnI	GATC	7 cut(s)	8, 105, 162, 176, 459, 706, 738
DpnII	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
Eam1104I	CTCTTC	2 cut(s)	183, 343
EarI	CTCTTC	2 cut(s)	183, 343
Eco31I	GGTCTC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	267, 273
FaeI	CATG	6 cut(s)	62, 104, 202, 324, 400, 572
FalI	AAGNNNNNCTT	4 cut(s)	410, 442, 770, 802
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	6 cut(s)	58, 100, 198, 320, 396, 568
FauNDI	CATATG	1 cut(s)	624
FbaI	TGATCA	3 cut(s)	6, 103, 160
Fnu4HI	GCNGC	4 cut(s)	531, 672, 675, 692
Fsp4HI	GCNGC	4 cut(s)	531, 672, 675, 692
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	4 cut(s)	531, 672, 675, 692
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	6 cut(s)	62, 104, 202, 324, 400, 572
HindIII	AAGCTT	1 cut(s)	609
HinfI	GANTC	2 cut(s)	214, 502
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	4 cut(s)	268, 307, 359, 597
Hpy188III	TCNNGA	4 cut(s)	101, 506, 569, 702
Hpy8I	GTNNAC	4 cut(s)	268, 307, 359, 597
HpyAV	CCTTC	1 cut(s)	793
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	95, 315, 730, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 155, 671
HpyF3I	CTNAG	2 cut(s)	154, 591
Hsp92II	CATG	6 cut(s)	62, 104, 202, 324, 400, 572
Ksp22I	TGATCA	3 cut(s)	6, 103, 160
Kzo9I	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
Lsp1109I	GCAGC	4 cut(s)	517, 683, 686, 703
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	323, 371, 489
MalI	GATC	7 cut(s)	8, 105, 162, 176, 459, 706, 738
MboI	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
MboII	GAAGA	8 cut(s)	197, 200, 330, 452, 737, 770, 773, 808
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	2 cut(s)	164, 232
MmeI	TCCRAC	1 cut(s)	714
MseI	TTAA	3 cut(s)	465, 543, 741
MspA1I	CMGCKG	2 cut(s)	158, 293
MspI	CCGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	68, 155, 671
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
NlaIII	CATG	6 cut(s)	62, 104, 202, 324, 400, 572
NlaIV	GGNNCC	2 cut(s)	130, 793
NmuCI	GTSAC	2 cut(s)	323, 371
NspI	RCATGY	1 cut(s)	324
PagI	TCATGA	2 cut(s)	100, 568
PciI	ACATGT	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	214, 502
PinAI	ACCGGT	1 cut(s)	327
PkrI	GCNGC	4 cut(s)	532, 673, 676, 693
PscI	ACATGT	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	130, 793
PspPI	GGNCC	2 cut(s)	128, 791
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	2 cut(s)	158, 293
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	465, 543, 741
SatI	GCNGC	4 cut(s)	531, 672, 675, 692
Sau3AI	GATC	7 cut(s)	6, 103, 160, 174, 457, 704, 736
Sau96I	GGNCC	2 cut(s)	128, 791
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	527
SinI	GGWCC	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	164, 232
SsiI	CCGC	3 cut(s)	50, 446, 689
SspMI	CTAG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	500, 521, 771
TasI	AATT	2 cut(s)	164, 232
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	214, 502
Tru1I	TTAA	3 cut(s)	465, 543, 741
Tru9I	TTAA	3 cut(s)	465, 543, 741
TscAI	CASTG	2 cut(s)	317, 532
TseFI	GTSAC	2 cut(s)	323, 371
TseI	GCWGC	4 cut(s)	530, 671, 674, 691
Tsp45I	GTSAC	2 cut(s)	323, 371
TspDTI	ATGAA	3 cut(s)	413, 557, 662
TspRI	CASTG	2 cut(s)	317, 532
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.