Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015025

Physical Location & Seq

Genomic Coordinates Reverse (-)

10740347 .. 10742075

Gene Structure 1729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATGATGATGATGATGGAGGCTGCAAATCTTGAGGAGGACCAGAGCCAGATGATGATCATCAAAGGAAAGCGCACCAAGCGTCCGAGGCAGTCTTCTCCGATTGTGTTGACAACAACAGCTTCAAGCTCGTCTAGTCCTGGTGGTGGTGGTGATGACGTTGAAGATCATCATCATCATCATCAATCGGGAATGATGAGTACTCCGATTAGAGTTAGTGATCAAGATGATGAGACAACCGCCTCGCCGGCCACCTCAGCTGAACTCACAGAGATGAGCACTACAGAAGAAGAAGAAGACATGGCTAACTGTTTGATACTTTTGGCTCAGTCGGGTCAGACACAAATCCAAAAAGTTCAAGAACAACAACTACTACTACTACAACAACAGCAGCCTATCAAGGCTGTTGCTGCTGCTGATACTGCTCCTGGGTTATATGTGTACGAGTGCAAGACATGTAACAGGTGCTTTTCTTCTTTCCAAGCACTAGGTGGGCATAGAGCGAGTCACAAGAAACCCAAGGTCATCAGTAATGTCACCAACACAACACAAGCACAGCCCAAGAAAGCGTTGTCGTTTATGGAAGATCAAGACGAGTATGATCGTCGGTTTAACAACAACACAACAAGCACAACGCTTTCGTTACAAGTATCGAATAGGGTTTTTGGCAATAGCAAAGGCACCAAGGTTCATGAGTGTTCAGTGTGTGGGGCTGAGTTCGCTTCTGGTCAAGCTCTTGGGGGTCATATGAGGAGGCACAGAACTTTCATAAACACTACAACAACAGCACCAGCAGCTCCAACAATGAGTAGTCCTCAATCTCATCAAGCATCTAACAAGAGGCCAAGAAGTGTTTTGGAGTTAGACCTTAATCTTCCTGCGCCAGAAGAAGAGCGGCTCGATATCACCAAATTGCCATTTTCCAGCTCCAAGAAGGAACAAGTCATTGTCTTCTCTGCCTCTCCTTTGGTGAGATGCCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

329

Amino Acids

36.06

Weight (kDa)

6.46

Isoelectric Point (pI)

70.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	147 - 173	1e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	230 - 254	3.3e-12	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03510
fragaria_vesca	FvH4_6g16820
malus_domestica	MD04G1089100.v1.1 MD12G1107100.v1.1
prunus_persica	Prupe.7G125800_v2.0.a1
pyrus_communis	pycom12g10740
rosa_chinensis	RchiOBHm_Chr3g0470831
rosa_laevigata	RLG00000024242
rosa_multiflora	Rmu_sc0002790.1_g000023
rosa_roxburghii	Rroxscaffold_6G00410500
rosa_rugosa	Rorug03G0113100
rosa_samantha	Rh3AG162700 Rh3BG187800 Rh3CG177800 Rh3DG188000
rosa_wichuraiana	Rw3G015320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	680
AccBSI	CCGCTC	1 cut(s)	895
AciI	CCGC	2 cut(s)	240, 895
AcoI	YGGCCR	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	202, 443
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	455
AgsI	TTSAA	3 cut(s)	126, 164, 359
AjnI	CCWGG	2 cut(s)	139, 427
AluBI	AGCT	6 cut(s)	122, 129, 260, 734, 797, 927
AluI	AGCT	6 cut(s)	122, 129, 260, 734, 797, 927
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	249, 842
ApeKI	GCWGC	5 cut(s)	23, 391, 410, 413, 794
AspLEI	GCGC	2 cut(s)	75, 883
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	4 cut(s)	164, 529, 898, 982
AvaII	GGWCC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	680
BbsI	GAAGAC	3 cut(s)	87, 303, 943
Bbv12I	GWGCWC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	256
BbvI	GCAGC	5 cut(s)	10, 397, 400, 403, 806
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	2 cut(s)	141, 429
BclI	TGATCA	2 cut(s)	57, 220
BcoDI	GTCTC	1 cut(s)	227
BfaI	CTAG	2 cut(s)	135, 488
BfmI	CTRYAG	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	248
BisI	GCNGC	6 cut(s)	24, 392, 411, 414, 795, 896
BlsI	GCNGC	6 cut(s)	25, 393, 412, 415, 796, 897
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	141, 429
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	682
BmrFI	CCNGG	2 cut(s)	141, 429
BmsI	GCATC	2 cut(s)	839, 965
BpiI	GAAGAC	3 cut(s)	87, 303, 943
BplI	GAGNNNNNCTC	2 cut(s)	799, 831
Bpu10I	CCTNAGC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	3 cut(s)	56, 59, 171
BsaJI	CCNNGG	4 cut(s)	86, 428, 519, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	247
Bse8I	GATNNNNATC	3 cut(s)	56, 59, 171
BseBI	CCWGG	2 cut(s)	141, 429
BseDI	CCNNGG	4 cut(s)	86, 428, 519, 684
BseJI	GATNNNNATC	3 cut(s)	56, 59, 171
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	3 cut(s)	270, 341, 705
BseRI	GAGGAG	2 cut(s)	50, 766
BseXI	GCAGC	5 cut(s)	10, 397, 400, 403, 806
BshFI	GGCC	2 cut(s)	251, 844
BshNI	GGYRCC	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	251, 844
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	5 cut(s)	57, 166, 220, 586, 601
BspACI	CCGC	2 cut(s)	240, 895
BspANI	GGCC	2 cut(s)	251, 844
BspCNI	CTCAG	3 cut(s)	269, 340, 706
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	682
BspQI	GCTCTTC	1 cut(s)	885
BspT107I	GGYRCC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	895
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssECI	CCNNGG	4 cut(s)	86, 428, 519, 684
BssMI	GATC	5 cut(s)	57, 166, 220, 586, 601
BssT1I	CCWWGG	2 cut(s)	519, 684
Bst2UI	CCWGG	2 cut(s)	141, 429
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	885
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	3 cut(s)	256, 327, 714
BstHHI	GCGC	2 cut(s)	75, 883
BstKTI	GATC	5 cut(s)	60, 169, 223, 589, 604
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	5 cut(s)	57, 166, 220, 586, 601
BstMWI	GCNNNNNNNGC	8 cut(s)	79, 88, 248, 257, 410, 422, 719, 794
BstNI	CCWGG	2 cut(s)	141, 429
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	139, 427
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	5 cut(s)	10, 397, 400, 403, 806
BstV2I	GAAGAC	3 cut(s)	87, 303, 943
BsuRI	GGCC	2 cut(s)	251, 844
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	2 cut(s)	75, 883
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	40
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	201, 442
CviAII	CATG	3 cut(s)	301, 456, 692
CviQI	GTAC	2 cut(s)	201, 442
DdeI	CTNAG	3 cut(s)	256, 327, 714
DpnI	GATC	5 cut(s)	59, 168, 222, 588, 603
DpnII	GATC	5 cut(s)	57, 166, 220, 586, 601
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Eco130I	CCWWGG	2 cut(s)	519, 684
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	139, 427
EcoRV	GATATC	1 cut(s)	904
EcoT14I	CCWWGG	2 cut(s)	519, 684
ErhI	CCWWGG	2 cut(s)	519, 684
FaeI	CATG	3 cut(s)	304, 459, 695
FatI	CATG	3 cut(s)	300, 455, 691
FauNDI	CATATG	1 cut(s)	747
FbaI	TGATCA	2 cut(s)	57, 220
Fnu4HI	GCNGC	6 cut(s)	24, 392, 411, 414, 795, 896
Fsp4HI	GCNGC	6 cut(s)	24, 392, 411, 414, 795, 896
FspBI	CTAG	2 cut(s)	135, 488
GlaI	GCGC	2 cut(s)	74, 882
GluI	GCNGC	6 cut(s)	24, 392, 411, 414, 795, 896
HaeIII	GGCC	2 cut(s)	251, 844
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	75, 883
Hin1II	CATG	3 cut(s)	304, 459, 695
Hin6I	GCGC	2 cut(s)	73, 881
HinP1I	GCGC	2 cut(s)	73, 881
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	4 cut(s)	164, 529, 898, 982
Hpy166II	GTNNAC	2 cut(s)	111, 442
Hpy188I	TCNGA	4 cut(s)	87, 102, 207, 339
Hpy188III	TCNNGA	6 cut(s)	32, 189, 224, 359, 590, 692
Hpy8I	GTNNAC	2 cut(s)	111, 442
Hpy99I	CGWCG	1 cut(s)	609
HpyAV	CCTTC	1 cut(s)	928
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	2 cut(s)	26, 450
HpyF10VI	GCNNNNNNNGC	8 cut(s)	79, 88, 248, 257, 410, 422, 719, 794
HpyF3I	CTNAG	3 cut(s)	256, 327, 714
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	304, 459, 695
HspAI	GCGC	2 cut(s)	73, 881
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Ksp22I	TGATCA	2 cut(s)	57, 220
Kzo9I	GATC	5 cut(s)	57, 166, 220, 586, 601
LguI	GCTCTTC	1 cut(s)	885
LmnI	GCTCC	3 cut(s)	430, 802, 932
Lsp1109I	GCAGC	5 cut(s)	10, 397, 400, 403, 806
LweI	GCATC	2 cut(s)	839, 965
MaeI	CTAG	2 cut(s)	135, 488
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	4 cut(s)	458, 506, 535, 642
MalI	GATC	5 cut(s)	59, 168, 222, 588, 603
MbiI	CCGCTC	1 cut(s)	895
MboI	GATC	5 cut(s)	57, 166, 220, 586, 601
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	911
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	1 cut(s)	824
MroNI	GCCGGC	1 cut(s)	247
MseI	TTAA	2 cut(s)	612, 870
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	260
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	141, 429
MvaI	CCWGG	2 cut(s)	141, 429
MwoI	GCNNNNNNNGC	8 cut(s)	79, 88, 248, 257, 410, 422, 719, 794
NaeI	GCCGGC	1 cut(s)	249
NdeI	CATATG	1 cut(s)	747
NdeII	GATC	5 cut(s)	57, 166, 220, 586, 601
NgoMIV	GCCGGC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	304, 459, 695
NlaIV	GGNNCC	1 cut(s)	682
NmuCI	GTSAC	2 cut(s)	506, 535
NspI	RCATGY	1 cut(s)	459
PagI	TCATGA	1 cut(s)	691
PciI	ACATGT	1 cut(s)	455
PciSI	GCTCTTC	1 cut(s)	885
PdiI	GCCGGC	1 cut(s)	249
PkrI	GCNGC	6 cut(s)	25, 393, 412, 415, 796, 897
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PscI	ACATGT	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	139, 427
PspGI	CCWGG	2 cut(s)	139, 427
PspN4I	GGNNCC	1 cut(s)	682
PspPI	GGNCC	1 cut(s)	40
PsrI	GAACNNNNNNTAC	2 cut(s)	354, 386
PvuII	CAGCTG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	202, 443
RsaNI	GTAC	2 cut(s)	201, 442
RseI	CAYNNNNRTG	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	885
SaqAI	TTAA	2 cut(s)	612, 870
SatI	GCNGC	6 cut(s)	24, 392, 411, 414, 795, 896
Sau3AI	GATC	5 cut(s)	57, 166, 220, 586, 601
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	2 cut(s)	141, 429
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	2 cut(s)	839, 965
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	911
SsiI	CCGC	2 cut(s)	240, 895
SspMI	CTAG	2 cut(s)	135, 488
StyD4I	CCNGG	2 cut(s)	139, 427
StyI	CCWWGG	2 cut(s)	519, 684
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	653, 900
TasI	AATT	1 cut(s)	911
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	898
Tru1I	TTAA	2 cut(s)	612, 870
Tru9I	TTAA	2 cut(s)	612, 870
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	2 cut(s)	506, 535
TseI	GCWGC	5 cut(s)	23, 391, 410, 413, 794
Tsp45I	GTSAC	2 cut(s)	506, 535
TspDTI	ATGAA	2 cut(s)	680, 757
TspRI	CASTG	1 cut(s)	708
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XspI	CTAG	2 cut(s)	135, 488
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.