Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012740

Physical Location & Seq

Genomic Coordinates Reverse (-)

985622 .. 990630

Gene Structure 5009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGGAGCTAGGAGATACGACGTCGGTGATTCCAGACTCGTTCATGGGATACAGAGACGACATAACAATGCAAATGTCAATGGTTTTGGATCAGATACGAGCTCCATTGATTGTTCCAGCCCTTAGGCTCGGTGTTTACATCTGTTTGACAATGTCGGTGATGCTCTTTGTTGAAAGGGTTTACATGGGAATTGTTATCTCTCTTGTGAAGCTGTTTGGTCGAAAACCAGATAAACGTTTCAAATATGAACCAATCAAAGATGACATCGAGCTTGGAAACTCTGCTTACCCGATGGTTCTTATTCAAATCCCAATGTTCAACGAACGAGAGGTTTATCAACTATCTATTGGAGCTGCTTGTGGACTCTCATGGCCTTCTGATCGAATCGTTATTCAAGTTCTTGATGATTCCACTGATCCAACGATCAAAGATCTAGTGGAGATGGAGTGTAGCAGGTGGGCGAGTAAAGGAGTAAACATCAAGTATGAGATCAGAGACAACAGAAATGGATACAAAGCAGGAGCTTTGAAAGAAGGAATGAAGAAGAGTTATGTCAAAAGCTGCGATTACGTTGCAATCTTCGACGCTGATTTTCAACCTGAAGCGGATTTTCTATGGAGAACCGTACCGTATCTACTCCATAACCCTAAGCTTGCTCTTGTTCAAGCTCGCTGGAAATTCGTAAATTCGGATGAATGTTTGATGACAAGGATGCAAGAAATGTCTTTGGATTATCATTTTACGGTGGAACAAGAAGTTGGTTCTTCTACTTACGCTTTCTTCGGATTCAATGGAACTGCGGGAATATGGAGAATATCGGCATTAAACGAAGCTGGTGGTTGGAAAGATAGAACGACCGTGGAAGATATGGATTTGGCCGTGAGAGCTAGTCTCAAGGGTTGGAAATTCTTGTACCTCGGTTCTTTGAAGGTTAAAAACGAGTTGCCAAGTACATTCAAGGCTTATAGGTATCAACAGCACAGGTGGTCATGTGGTCCAGCTAATCTTTTCAGGAAAATGGCATTCGAAATCATGACTAATAAGAACGTGACTTTGTGGAAGAAAGTTCATGTGATATATAGCTTCTTCGTGGTTAGAAAGCTAGTGGCACACATTGTTACCTTCATCTTCTACTGTGTGATCTTACCCGCTACAGTTCTTGTACCGGAAGTTACTGTTCCGAAATGGGGAGCGGTTTACATTCCTTCAGTCATTACTCTCCTCAACGCCGTTGGGACACCAAGGTCATTGCATCTTATGGTCTTTTGGATTCTGTTCGAGAATGTGATGTCTCTTCACAGAACAAAAGCTACCTTTATCGGTTTACTCGAAGGAGGAAGAGTTAATGAGTGGATTGTTACAGAGAAGCTGGGAGATGTTAAGGCTAAATCAGCCACCAAGACTTCAAAGAAGGTTATTCGTTTTAGATTTGGAGATAGAATTCATGTGTTGGAACTCGGTGTAGGAATGTATCTGTTATTTGTGGGATGTTATGACGCGTTTTTTGGGAAGAATCATTATTATCTATACCTTTTCGCACAAGCAATCGCGTTCTTCATTGCGGGATTCGGGCAAATTGGGACAATTGTGCCTAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0043207 GO:0044764 GO:0050896 GO:0051704 GO:0051707 GO:0051753 GO:0070085 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

533

Amino Acids

60.92

Weight (kDa)

9.04

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tranf_2_3	PF13641	98 - 332	1.9e-13	Glycosyltransferase like family 2
Glycos_transf_2	PF00535	103 - 251	2.1e-09	Glycosyl transferase family 2
Glyco_trans_2_3	PF13632	190 - 386	2.8e-18	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03760
fragaria_vesca	FvH4_6g17730
malus_domestica	MD12G1016200.v1.1 MD14G1014300.v1.1
prunus_persica	Prupe.7G119100_v2.0.a1
pyrus_communis	pycom12g01330 pycom14g01200
rosa_chinensis	RchiOBHm_Chr3g0471961
rosa_laevigata	RLG00000024116
rosa_multiflora	Rmu_sc0000090.1_g000021
rosa_roxburghii	Rroxscaffold_6G00409410
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172700 Rh3BG198200 Rh3CG189300 Rh3CG196700 Rh3DG176200
rosa_wichuraiana	Rw3G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	444
AasI	GACNNNNNNGTC	1 cut(s)	1243
AatII	GACGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	444
AccBSI	CCGCTC	1 cut(s)	1193
AccII	CGCG	2 cut(s)	1499, 1550
AciI	CCGC	5 cut(s)	605, 800, 1149, 1193, 1562
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	2 cut(s)	96, 410
AcoI	YGGCCR	1 cut(s)	876
AcsI	RAATTY	4 cut(s)	677, 685, 905, 1440
AcuI	CTGAAG	2 cut(s)	621, 1191
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	4 cut(s)	627, 914, 952, 1164
AfiI	CCNNNNNNNGG	1 cut(s)	1187
AflIII	ACRYGT	1 cut(s)	1497
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	4 cut(s)	48, 489, 896, 1296
AlwI	GGATC	2 cut(s)	96, 410
AoxI	GGCC	2 cut(s)	371, 876
ApeKI	GCWGC	2 cut(s)	353, 561
ApoI	RAATTY	4 cut(s)	677, 685, 905, 1440
ArsI	GACNNNNNNTTYG	2 cut(s)	1487, 1519
AspS9I	GGNCC	1 cut(s)	995
AsuHPI	GGTGA	2 cut(s)	37, 169
AsuII	TTCGAA	1 cut(s)	1026
AvaII	GGWCC	1 cut(s)	995
AxyI	CCTNAGG	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	340, 548
BccI	CCATC	2 cut(s)	286, 436
BceAI	ACGGC	2 cut(s)	863, 1214
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciVI	GTATCC	2 cut(s)	41, 503
BcoDI	GTCTC	4 cut(s)	48, 489, 896, 1296
BfaI	CTAG	4 cut(s)	8, 434, 888, 1103
BfmI	CTRYAG	1 cut(s)	1152
BfuAI	ACCTGC	1 cut(s)	444
BfuI	GTATCC	2 cut(s)	41, 503
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	2 cut(s)	354, 562
BlsI	GCNGC	2 cut(s)	355, 563
Bme18I	GGWCC	1 cut(s)	995
BmgT120I	GGNCC	1 cut(s)	995
BmsI	GCATC	3 cut(s)	150, 702, 1261
BplI	GAGNNNNNCTC	2 cut(s)	876, 908
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	1026
BpuEI	CTTGAG	1 cut(s)	878
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	3 cut(s)	858, 916, 1241
BsaWI	WCCGGW	1 cut(s)	1165
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 1326, 1356
Bsc4I	CCNNNNNNNGG	1 cut(s)	1187
Bse21I	CCTNAGG	1 cut(s)	122
Bse3DI	GCAATG	2 cut(s)	1247, 1557
BseDI	CCNNGG	3 cut(s)	858, 916, 1241
BseGI	GGATG	3 cut(s)	697, 717, 1493
BseLI	CCNNNNNNNGG	1 cut(s)	1187
BseMI	GCAATG	2 cut(s)	1247, 1557
BseRI	GAGGAG	1 cut(s)	1211
BseXI	GCAGC	2 cut(s)	340, 548
BseYI	CCCAGC	1 cut(s)	1369
Bsh1236I	CGCG	2 cut(s)	1499, 1550
Bsh1285I	CGRYCG	1 cut(s)	858
BshFI	GGCC	2 cut(s)	373, 878
BsiEI	CGRYCG	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	1166
BslFI	GGGAC	2 cut(s)	1249, 1594
BslI	CCNNNNNNNGG	1 cut(s)	1187
BsmAI	GTCTC	4 cut(s)	48, 489, 896, 1296
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	1249, 1594
BsmI	GAATGC	1 cut(s)	1022
BsnI	GGCC	2 cut(s)	373, 878
Bsp119I	TTCGAA	1 cut(s)	1026
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
BspACI	CCGC	5 cut(s)	605, 800, 1149, 1193, 1562
BspANI	GGCC	2 cut(s)	373, 878
BspFNI	CGCG	2 cut(s)	1499, 1550
BspHI	TCATGA	1 cut(s)	1032
BspMI	ACCTGC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	96, 410
BspT104I	TTCGAA	1 cut(s)	1026
BsrBI	CCGCTC	1 cut(s)	1193
BsrDI	GCAATG	2 cut(s)	1247, 1557
BssECI	CCNNGG	3 cut(s)	858, 916, 1241
BssMI	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	1241
Bst4CI	ACNGT	7 cut(s)	625, 630, 745, 859, 1136, 1156, 1177
Bst6I	CTCTTC	3 cut(s)	539, 1299, 1333
BstACI	GRCGYC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	1026
BstC8I	GCNNGC	2 cut(s)	654, 670
BstDEI	CTNAG	2 cut(s)	122, 648
BstDSI	CCRYGG	1 cut(s)	858
BstF5I	GGATG	3 cut(s)	697, 717, 1493
BstFNI	CGCG	2 cut(s)	1499, 1550
BstKTI	GATC	7 cut(s)	91, 382, 418, 426, 433, 492, 1143
BstMAI	GTCTC	4 cut(s)	48, 489, 896, 1296
BstMBI	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
BstMCI	CGRYCG	1 cut(s)	858
BstMWI	GCNNNNNNNGC	2 cut(s)	884, 1391
BstSFI	CTRYAG	1 cut(s)	1152
BstUI	CGCG	2 cut(s)	1499, 1550
BstV1I	GCAGC	2 cut(s)	340, 548
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	122
BsuI	GTATCC	2 cut(s)	41, 503
BsuRI	GGCC	2 cut(s)	373, 878
BtgI	CCRYGG	1 cut(s)	858
BtsCI	GGATG	3 cut(s)	697, 717, 1493
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	444
Cac8I	GCNNGC	2 cut(s)	654, 670
CciI	TCATGA	1 cut(s)	1032
Cfr13I	GGNCC	1 cut(s)	995
CseI	GACGC	2 cut(s)	593, 1505
Csp6I	GTAC	4 cut(s)	626, 913, 951, 1163
CviAII	CATG	7 cut(s)	43, 184, 369, 990, 1033, 1070, 1445
CviQI	GTAC	4 cut(s)	626, 913, 951, 1163
DdeI	CTNAG	2 cut(s)	122, 648
DpnI	GATC	7 cut(s)	90, 381, 417, 425, 432, 491, 1142
DpnII	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
DrdI	GACNNNNNNGTC	1 cut(s)	1243
DseDI	GACNNNNNNGTC	1 cut(s)	1243
EaeI	YGGCCR	1 cut(s)	876
Eam1104I	CTCTTC	3 cut(s)	539, 1299, 1333
EarI	CTCTTC	3 cut(s)	539, 1299, 1333
Ecl136II	GAGCTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	1241
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	995
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	2 cut(s)	621, 1191
Eco81I	CCTNAGG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	1440
EcoT14I	CCWWGG	1 cut(s)	1241
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	1241
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	7 cut(s)	46, 187, 372, 993, 1036, 1073, 1448
FaqI	GGGAC	2 cut(s)	1249, 1594
FatI	CATG	7 cut(s)	42, 183, 368, 989, 1032, 1069, 1444
FauI	CCCGC	3 cut(s)	793, 1156, 1555
Fnu4HI	GCNGC	2 cut(s)	354, 562
FokI	GGATG	3 cut(s)	704, 724, 1500
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	354, 562
FspBI	CTAG	4 cut(s)	8, 434, 888, 1103
GluI	GCNGC	2 cut(s)	354, 562
GsaI	CCCAGC	1 cut(s)	1373
HaeIII	GGCC	2 cut(s)	373, 878
HapII	CCGG	1 cut(s)	1166
HgaI	GACGC	2 cut(s)	593, 1505
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	7 cut(s)	46, 187, 372, 993, 1036, 1073, 1448
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	9 cut(s)	28, 35, 363, 384, 407, 786, 1270, 1513, 1566
HpaII	CCGG	1 cut(s)	1166
HphI	GGTGA	2 cut(s)	37, 169
Hpy166II	GTNNAC	6 cut(s)	136, 181, 362, 475, 1198, 1325
Hpy188I	TCNGA	6 cut(s)	93, 379, 494, 691, 785, 1182
Hpy188III	TCNNGA	5 cut(s)	32, 401, 1012, 1033, 1279
Hpy8I	GTNNAC	6 cut(s)	136, 181, 362, 475, 1198, 1325
Hpy99I	CGWCG	3 cut(s)	22, 25, 587
HpyAV	CCTTC	7 cut(s)	384, 527, 922, 1132, 1215, 1325, 1405
HpyCH4III	ACNGT	7 cut(s)	625, 630, 745, 859, 1136, 1156, 1177
HpyCH4IV	ACGT	4 cut(s)	20, 235, 570, 1047
HpyCH4V	TGCA	4 cut(s)	70, 575, 715, 1252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	884, 1391
HpyF3I	CTNAG	2 cut(s)	122, 648
HpySE526I	ACGT	4 cut(s)	20, 235, 570, 1047
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	7 cut(s)	46, 187, 372, 993, 1036, 1073, 1448
Kzo9I	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
LmnI	GCTCC	5 cut(s)	4, 106, 350, 521, 1190
Lsp1109I	GCAGC	2 cut(s)	340, 548
LweI	GCATC	3 cut(s)	150, 702, 1261
MaeI	CTAG	4 cut(s)	8, 434, 888, 1103
MaeII	ACGT	4 cut(s)	20, 235, 570, 1047
MaeIII	GTNAC	4 cut(s)	1048, 1117, 1171, 1357
MalI	GATC	7 cut(s)	90, 381, 417, 425, 432, 491, 1142
MbiI	CCGCTC	1 cut(s)	1193
MboI	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
MfeI	CAATTG	1 cut(s)	1584
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	7 cut(s)	189, 677, 685, 905, 1440, 1575, 1584
MluI	ACGCGT	1 cut(s)	1497
MlyI	GAGTC	2 cut(s)	29, 357
MmeI	TCCRAC	4 cut(s)	443, 821, 881, 1431
MnlI	CCTC	4 cut(s)	322, 926, 1232, 1328
MseI	TTAA	4 cut(s)	824, 933, 1344, 1380
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	1 cut(s)	1166
MunI	CAATTG	1 cut(s)	1584
Mva1269I	GAATGC	1 cut(s)	1022
MvnI	CGCG	2 cut(s)	1499, 1550
MwoI	GCNNNNNNNGC	2 cut(s)	884, 1391
NdeII	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
NlaIII	CATG	7 cut(s)	46, 187, 372, 993, 1036, 1073, 1448
NmuCI	GTSAC	1 cut(s)	1048
NspV	TTCGAA	1 cut(s)	1026
PagI	TCATGA	1 cut(s)	1032
PaqCI	CACCTGC	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	1326
PctI	GAATGC	1 cut(s)	1022
PfeI	GAWTC	7 cut(s)	28, 384, 407, 786, 1270, 1513, 1566
PflFI	GACNNNGTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	355, 563
PleI	GAGTC	2 cut(s)	29, 357
PpsI	GAGTC	2 cut(s)	29, 357
Psp124BI	GAGCTC	1 cut(s)	103
Psp1406I	AACGTT	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	1369
PspPI	GGNCC	1 cut(s)	995
PsrI	GAACNNNNNNTAC	2 cut(s)	1294, 1326
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	151
RsaI	GTAC	4 cut(s)	627, 914, 952, 1164
RsaNI	GTAC	4 cut(s)	626, 913, 951, 1163
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	4 cut(s)	824, 933, 1344, 1380
SatI	GCNGC	2 cut(s)	354, 562
Sau3AI	GATC	7 cut(s)	88, 379, 415, 423, 430, 489, 1140
Sau96I	GGNCC	1 cut(s)	995
SchI	GAGTC	2 cut(s)	29, 357
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	3 cut(s)	150, 702, 1261
SfcI	CTRYAG	1 cut(s)	1152
SfuI	TTCGAA	1 cut(s)	1026
SinI	GGWCC	1 cut(s)	995
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	7 cut(s)	189, 677, 685, 905, 1440, 1575, 1584
SsiI	CCGC	5 cut(s)	605, 800, 1149, 1193, 1562
SspMI	CTAG	4 cut(s)	8, 434, 888, 1103
SstI	GAGCTC	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	1241
TaaI	ACNGT	7 cut(s)	625, 630, 745, 859, 1136, 1156, 1177
TaiI	ACGT	4 cut(s)	23, 238, 573, 1050
TaqI	TCGA	7 cut(s)	220, 267, 382, 582, 1026, 1278, 1329
TasI	AATT	7 cut(s)	189, 677, 685, 905, 1440, 1575, 1584
TatI	WGTACW	1 cut(s)	950
TfiI	GAWTC	7 cut(s)	28, 384, 407, 786, 1270, 1513, 1566
Tru1I	TTAA	4 cut(s)	824, 933, 1344, 1380
Tru9I	TTAA	4 cut(s)	824, 933, 1344, 1380
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	1048
TseI	GCWGC	2 cut(s)	353, 561
Tsp45I	GTSAC	1 cut(s)	1048
TspDTI	ATGAA	8 cut(s)	31, 261, 554, 708, 1058, 1114, 1433, 1546
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	995
XapI	RAATTY	4 cut(s)	677, 685, 905, 1440
XspI	CTAG	4 cut(s)	8, 434, 888, 1103
ZraI	GACGTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.