Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0012740

Physical Location & Seq

Genomic Coordinates Reverse (-)

15620428 .. 15625496

Gene Structure 5069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCAGGTTTATCAACTTTCAATTGGAGCTGTTTGTGGGCTATCATGGCCTGCTGATAGACTCATCATTCAAGTCCTTGATGATTCAACAGACACAACTATCAAGGCCATGGTAGAGCGAGAGTGCCAAAGATGGGCAAGCAAAGGCATAAACATCAGGTACGAAATCAGAGACAACAGAACTGGGTACAAATCAGGGGCTCTCAAAGAAGGCCTGAACCGCAACTACGTCAAAAACTGCGATTACGTCGCCATTTTCGACGCCGACTTTCAACCGGAGCCAGATTTTCTCTGTCGCACCATTCCCTTCTTCATCCACAACTCCAATATCGCTCTAGTTCAGGCTCGCTGGAGATTCGTGAACTCTAATGAGTGCATGATGACAAGATTGCAAGAAATGTCACTGGATTATCATTTCACAGTTGAACAAGAAGTGGGCTCTTCCACTCATGCATTCTTTGGATTCAATGGGACTGCTGGTGTGTGGAGAATTGCTGCAATCAATGAGGCTGGGGGATGGAAGGACCGGACCACGGTGGAAGATATGGATCTGGCTGTTCGAGCGAGCCTCAAAGGCTGGAAATTTGTATATCTTGGTGATCTGCAGGTGAAGAGTGAATTGCCAAGTACTTTCAAGGCCTACCGCCACCAACAACACAGGTGGTCTTGCGGTCCGGCTAATCTTTTCAGGAAAATGGTGTTGGATATTATAAGAAACAAGAAAGTATCAGTATGGCAAAAATTTCATGTGATTTACAGCTTCTTCTTCGTTAGGAAGATCATAGCACACATCAATGCCTTTTTCTTCTATTGCATTGTCTTGCCGGGAACTGTTCTCGTGCCTGAAGTTACCGTACCAAAGTGGGGTGGAGTTTACATCCCTACCATAATTACCCTTCTTAATGCAGTCGGCACTCCAAGGTCAGCGCACCTGTTGGTCTTCTGGATCCTATTCGAGAACGTCATGTCACTGCACCGTACAAAGGCTACGATCATTGGTCTACTAGAGGGTAGTAGTGTGAATGAATGGATCGTCACTGAAAAGCTTGGAGATATTCTTAAGAATAAAGTAGGAGCAAAAGCGCCCAGAAAATTTCGATTCAGGATTGGAGAAAGGCTTCATTTGACAGAGCTTGCTGTGGGATGTTATCTCTTCTTTTGTGGCTGTTATGATGTCCTCTTTGGCAAAAATAACTACTTCATCTTCTTTTACATCCAAGCCTTAGCCTTCTTTATCATGGGGTTTGGGTACGTTGGGACATTTGTTCCCACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0043207 GO:0044764 GO:0050896 GO:0051704 GO:0051707 GO:0051753 GO:0070085 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

425

Amino Acids

48.74

Weight (kDa)

9.17

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tranf_2_3	PF13641	17 - 224	1.2e-15	Glycosyltransferase like family 2
Glycos_transf_2	PF00535	22 - 155	1.1e-09	Glycosyl transferase family 2
Glyco_trans_2_3	PF13632	82 - 274	3.5e-20	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03760
fragaria_vesca	FvH4_6g17730
malus_domestica	MD12G1016200.v1.1 MD14G1014300.v1.1
prunus_persica	Prupe.7G119100_v2.0.a1
pyrus_communis	pycom12g01330 pycom14g01200
rosa_chinensis	RchiOBHm_Chr3g0471961
rosa_laevigata	RLG00000024116
rosa_multiflora	Rmu_sc0000090.1_g000021
rosa_roxburghii	Rroxscaffold_6G00409410
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172700 Rh3BG198200 Rh3CG189300 Rh3CG196700 Rh3DG176200
rosa_wichuraiana	Rw3G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AarI	CACCTGC	1 cut(s)	595
Acc36I	ACCTGC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	1000
AciI	CCGC	3 cut(s)	220, 643, 669
AclWI	GGATC	4 cut(s)	555, 940, 953, 1037
AcsI	RAATTY	3 cut(s)	581, 740, 1091
AcuI	CTGAAG	1 cut(s)	864
AcyI	GRCGYC	1 cut(s)	261
AfaI	GTAC	6 cut(s)	161, 188, 628, 855, 979, 1250
AfiI	CCNNNNNNNGG	4 cut(s)	133, 532, 863, 982
AflII	CTTAAG	1 cut(s)	1058
AgsI	TTSAA	7 cut(s)	21, 71, 87, 272, 425, 466, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	4 cut(s)	29, 759, 1045, 1132
AluI	AGCT	4 cut(s)	29, 759, 1045, 1132
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	4 cut(s)	555, 940, 953, 1037
AoxI	GGCC	4 cut(s)	47, 105, 211, 636
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	3 cut(s)	581, 740, 1091
Asp700I	GAANNNNTTC	1 cut(s)	1116
AspLEI	GCGC	2 cut(s)	928, 1084
AspS9I	GGNCC	3 cut(s)	523, 528, 671
AsuC2I	CCSGG	1 cut(s)	825
AsuHPI	GGTGA	2 cut(s)	608, 619
AvaII	GGWCC	3 cut(s)	523, 528, 671
BamHI	GGATCC	1 cut(s)	945
BanII	GRGCYC	2 cut(s)	202, 440
BarI	GAAGNNNNNNTAC	2 cut(s)	837, 869
BauI	CACGAG	1 cut(s)	836
BbsI	GAAGAC	1 cut(s)	931
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	2 cut(s)	126, 510
BcnI	CCSGG	1 cut(s)	825
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	335, 1004
BfmI	CTRYAG	1 cut(s)	602
BfoI	RGCGCY	1 cut(s)	1085
BfrI	CTTAAG	1 cut(s)	1058
BfuAI	ACCTGC	1 cut(s)	595
BglI	GCCNNNNNGGC	1 cut(s)	573
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	3 cut(s)	523, 528, 671
BmgT120I	GGNCC	3 cut(s)	523, 528, 671
BmiI	GGNNCC	2 cut(s)	279, 947
BmrFI	CCNGG	1 cut(s)	825
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	931
BplI	GAGNNNNNCTC	2 cut(s)	552, 584
BpmI	CTGGAG	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	1222
BpuMI	CCSGG	1 cut(s)	825
BsaBI	GATNNNNATC	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	108, 531, 917
BsaWI	WCCGGW	2 cut(s)	274, 525
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 532, 863, 982
Bse1I	ACTGG	2 cut(s)	187, 408
Bse8I	GATNNNNATC	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	108, 531, 917
BseGI	GGATG	5 cut(s)	312, 521, 876, 1148, 1212
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	4 cut(s)	133, 532, 863, 982
BseNI	ACTGG	2 cut(s)	187, 408
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	956
BshFI	GGCC	4 cut(s)	49, 107, 213, 638
BsiSI	CCGG	4 cut(s)	275, 526, 674, 824
BslFI	GGGAC	2 cut(s)	484, 1270
BslI	CCNNNNNNNGG	4 cut(s)	133, 532, 863, 982
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	484, 1270
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	49, 107, 213, 638
Bsp1286I	GDGCHC	2 cut(s)	202, 440
Bsp143I	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	3 cut(s)	220, 643, 669
BspANI	GGCC	4 cut(s)	49, 107, 213, 638
BspLI	GGNNCC	2 cut(s)	279, 947
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	4 cut(s)	555, 940, 953, 1037
BspQI	GCTCTTC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	1058
BsrI	ACTGG	2 cut(s)	187, 408
BssECI	CCNNGG	3 cut(s)	108, 531, 917
BssMI	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
BssNI	GRCGYC	1 cut(s)	261
BssSI	CACGAG	1 cut(s)	836
BssT1I	CCWWGG	2 cut(s)	108, 917
Bst2BI	CACGAG	1 cut(s)	836
Bst4CI	ACNGT	5 cut(s)	421, 535, 832, 853, 977
Bst6I	CTCTTC	3 cut(s)	445, 605, 1157
BstACI	GRCGYC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	1058
BstC8I	GCNNGC	5 cut(s)	51, 139, 346, 565, 1134
BstDEI	CTNAG	2 cut(s)	1222, 1275
BstDSI	CCRYGG	2 cut(s)	108, 531
BstF5I	GGATG	5 cut(s)	312, 521, 876, 1148, 1212
BstH2I	RGCGCY	1 cut(s)	1085
BstHHI	GCGC	2 cut(s)	928, 1084
BstKTI	GATC	6 cut(s)	550, 601, 780, 948, 993, 1032
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 219, 560, 573
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	1 cut(s)	931
BstX2I	RGATCY	2 cut(s)	547, 945
BstYI	RGATCY	2 cut(s)	547, 945
BsuRI	GGCC	4 cut(s)	49, 107, 213, 638
BtgI	CCRYGG	2 cut(s)	108, 531
BtsCI	GGATG	5 cut(s)	312, 521, 876, 1148, 1212
BtsI	GCAGTG	1 cut(s)	968
BtsIMutI	CAGTG	3 cut(s)	401, 968, 1035
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	5 cut(s)	51, 139, 346, 565, 1134
CfoI	GCGC	2 cut(s)	928, 1084
Cfr13I	GGNCC	3 cut(s)	523, 528, 671
CpoI	CGGWCCG	1 cut(s)	671
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	6 cut(s)	160, 187, 627, 854, 978, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	641, 676
CspI	CGGWCCG	1 cut(s)	671
CviAII	CATG	7 cut(s)	45, 109, 376, 449, 746, 964, 1237
CviQI	GTAC	6 cut(s)	160, 187, 627, 854, 978, 1249
DdeI	CTNAG	2 cut(s)	1222, 1275
DpnI	GATC	6 cut(s)	549, 600, 779, 947, 992, 1031
DpnII	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
Eam1104I	CTCTTC	3 cut(s)	445, 605, 1157
EarI	CTCTTC	3 cut(s)	445, 605, 1157
Eco130I	CCWWGG	2 cut(s)	108, 917
Eco147I	AGGCCT	2 cut(s)	213, 638
Eco24I	GRGCYC	2 cut(s)	202, 440
Eco47I	GGWCC	3 cut(s)	523, 528, 671
Eco57I	CTGAAG	1 cut(s)	864
EcoT14I	CCWWGG	2 cut(s)	108, 917
EcoT22I	ATGCAT	1 cut(s)	454
EcoT38I	GRGCYC	2 cut(s)	202, 440
ErhI	CCWWGG	2 cut(s)	108, 917
FaeI	CATG	7 cut(s)	48, 112, 379, 452, 749, 967, 1240
FaqI	GGGAC	2 cut(s)	484, 1270
FatI	CATG	7 cut(s)	44, 108, 375, 448, 745, 963, 1236
FblI	GTMKAC	1 cut(s)	1000
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	5 cut(s)	299, 528, 863, 1155, 1199
FriOI	GRGCYC	2 cut(s)	202, 440
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	2 cut(s)	335, 1004
GlaI	GCGC	2 cut(s)	927, 1083
GluI	GCNGC	1 cut(s)	495
GsaI	CCCAGC	1 cut(s)	513
GsuI	CTGGAG	1 cut(s)	370
HaeII	RGCGCY	1 cut(s)	1085
HaeIII	GGCC	4 cut(s)	49, 107, 213, 638
HapII	CCGG	4 cut(s)	275, 526, 674, 824
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	2 cut(s)	928, 1084
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	7 cut(s)	48, 112, 379, 452, 749, 967, 1240
Hin6I	GCGC	2 cut(s)	926, 1082
HinP1I	GCGC	2 cut(s)	926, 1082
HindIII	AAGCTT	1 cut(s)	1043
HinfI	GANTC	5 cut(s)	60, 83, 354, 462, 1098
HpaII	CCGG	4 cut(s)	275, 526, 674, 824
HphI	GGTGA	2 cut(s)	608, 619
Hpy166II	GTNNAC	3 cut(s)	361, 874, 1001
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	5 cut(s)	358, 688, 943, 955, 1102
Hpy8I	GTNNAC	3 cut(s)	361, 874, 1001
Hpy99I	CGWCG	2 cut(s)	251, 263
HpyAV	CCTTC	5 cut(s)	203, 316, 514, 905, 1237
HpyCH4III	ACNGT	5 cut(s)	421, 535, 832, 853, 977
HpyCH4IV	ACGT	4 cut(s)	228, 246, 960, 1251
HpyCH4V	TGCA	9 cut(s)	4, 375, 391, 452, 497, 604, 813, 905, 973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 219, 560, 573
HpyF3I	CTNAG	2 cut(s)	1222, 1275
HpySE526I	ACGT	4 cut(s)	228, 246, 960, 1251
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	7 cut(s)	48, 112, 379, 452, 749, 967, 1240
HspAI	GCGC	2 cut(s)	926, 1082
Kzo9I	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	3 cut(s)	26, 277, 1073
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	335, 1004
MaeII	ACGT	4 cut(s)	228, 246, 960, 1251
MaeIII	GTNAC	4 cut(s)	399, 847, 966, 1033
MalI	GATC	6 cut(s)	549, 600, 779, 947, 992, 1031
MboI	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	2 cut(s)	547, 945
MhlI	GDGCHC	2 cut(s)	202, 440
MluCI	AATT	7 cut(s)	21, 489, 581, 617, 740, 888, 1091
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	4 cut(s)	499, 578, 1000, 1187
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	1116
MseI	TTAA	2 cut(s)	900, 1059
MslI	CAYNNNNRTG	1 cut(s)	792
MspCI	CTTAAG	1 cut(s)	1058
MspI	CCGG	4 cut(s)	275, 526, 674, 824
MspR9I	CCNGG	1 cut(s)	825
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	452
MwoI	GCNNNNNNNGC	4 cut(s)	46, 219, 560, 573
NciI	CCSGG	1 cut(s)	825
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
NlaIII	CATG	7 cut(s)	48, 112, 379, 452, 749, 967, 1240
NlaIV	GGNNCC	2 cut(s)	279, 947
NmuCI	GTSAC	3 cut(s)	399, 966, 1033
NsiI	ATGCAT	1 cut(s)	454
PaqCI	CACCTGC	1 cut(s)	595
PceI	AGGCCT	2 cut(s)	213, 638
PciSI	GCTCTTC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	1116
PfeI	GAWTC	4 cut(s)	83, 354, 462, 1098
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	710
PspFI	CCCAGC	1 cut(s)	509
PspN4I	GGNNCC	2 cut(s)	279, 947
PspPI	GGNCC	3 cut(s)	523, 528, 671
PsrI	GAACNNNNNNTAC	2 cut(s)	209, 241
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	2 cut(s)	547, 945
RsaI	GTAC	6 cut(s)	161, 188, 628, 855, 979, 1250
RsaNI	GTAC	6 cut(s)	160, 187, 627, 854, 978, 1249
RseI	CAYNNNNRTG	1 cut(s)	792
Rsr2I	CGGWCCG	1 cut(s)	671
RsrII	CGGWCCG	1 cut(s)	671
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	900, 1059
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	6 cut(s)	547, 598, 777, 945, 990, 1029
Sau96I	GGNCC	3 cut(s)	523, 528, 671
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	825
SduI	GDGCHC	2 cut(s)	202, 440
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	3 cut(s)	523, 528, 671
SmiMI	CAYNNNNRTG	1 cut(s)	792
SmlI	CTYRAG	1 cut(s)	1058
SmoI	CTYRAG	1 cut(s)	1058
Sse9I	AATT	7 cut(s)	21, 489, 581, 617, 740, 888, 1091
SseBI	AGGCCT	2 cut(s)	213, 638
SsiI	CCGC	3 cut(s)	220, 643, 669
SspMI	CTAG	2 cut(s)	335, 1004
StuI	AGGCCT	2 cut(s)	213, 638
StyD4I	CCNGG	1 cut(s)	823
StyI	CCWWGG	2 cut(s)	108, 917
TaaI	ACNGT	5 cut(s)	421, 535, 832, 853, 977
TaiI	ACGT	4 cut(s)	231, 249, 963, 1254
TaqI	TCGA	4 cut(s)	258, 559, 954, 1096
TasI	AATT	7 cut(s)	21, 489, 581, 617, 740, 888, 1091
TatI	WGTACW	1 cut(s)	626
TfiI	GAWTC	4 cut(s)	83, 354, 462, 1098
Tru1I	TTAA	2 cut(s)	900, 1059
Tru9I	TTAA	2 cut(s)	900, 1059
TscAI	CASTG	3 cut(s)	408, 975, 1042
TseFI	GTSAC	3 cut(s)	399, 966, 1033
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	3 cut(s)	399, 966, 1033
TspDTI	ATGAA	5 cut(s)	301, 734, 1038, 1109, 1189
TspRI	CASTG	3 cut(s)	408, 975, 1042
Vha464I	CTTAAG	1 cut(s)	1058
VpaK11BI	GGWCC	3 cut(s)	523, 528, 671
XapI	RAATTY	3 cut(s)	581, 740, 1091
XmiI	GTMKAC	1 cut(s)	1000
XmnI	GAANNNNTTC	1 cut(s)	1116
XspI	CTAG	2 cut(s)	335, 1004
ZrmI	AGTACT	1 cut(s)	628
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.