Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0012740

Physical Location & Seq

Genomic Coordinates Forward (+)

16660334 .. 16665393

Gene Structure 5060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG189300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGTAGAGCGAGAGTGCCAAAGATGGGCAAGCAAAGGCATAAACATCAGGTACGAAATCAGAGACAACAGAACTGGGTACAAATCAGGGGCTCTCAAAGAAGGCCTGAACCGCAACTACGTCAAAAACTGCGATTACGTCGCCATTTTCGACGCCGACTTTCAACCGGAGCCAGATTTTCTCTGTCGCACCATTCCCTTCTTCATCCACAACTCCAATATCGCTCTAGTTCAGGCTCGCTGGAGATTCGTGAACTCTAATGAGTGCATGATGACAAGATTGCAAGAAATGTCACTGGATTATCATTTCACAGTTGAACAAGAAGTGGGCTCTTCCACTCATGCATTCTTTGGATTCAATGGGACTGCTGGTGTGTGGAGAATTGCTGCAATCAATGAGGCTGGGGGATGGAAGGACCGGACCACGGTGGAAGATATGGATCTGGCTGTTCGAGCGAGCCTCAAAGGCTGGAAATTTGTATATCTTGGTGATCTGCAGGTGAAGAGTGAATTGCCAAGTACTTTCAAGGCCTACCGCCACCAACAACACAGGTGGTCTTGCGGTCCGGCTAATCTTTTCAGGAAAATGGTGTTGGATATTATAAGAAACAAGAAAGTATCAGTATGGCAAAAATTTCATGTGATTTACAGCTTCTTCTTCGTTAGGAAGATCATAGCACACATCAATGCCTTTTTCTTCTATTGCATTGTCTTGCCGGGAACTGTTCTCGTGCCTGAAGTTACCGTACCAAAGTGGGGTGGAGTTTACATCCCTACCATAATTACCCTTCTTAATGCAGTCGGCACTCCAAGGTCAGCGCACCTGTTGGTCTTCTGGATCCTATTCGAGAACGTCATGTCACTGCACCGTACAAAGGCTACGATCATTGGTCTACTAGAGGGTAGTAGTGTGAATGAATGGATCGTCACTGAAAAGCTTGGAGATATTCTTAAGAATAAAGTAGGAGCAAAAGCGCCCAGAAAATTTCGATTCAGGATTGGAGAAAGGCTTCATTTGACAGAGCTTGCTGTGGGATGTTATCTCTTCTTTTGTGGCTGTTATGATGTCCTCTTTGGCAAAAATAACTACTTCATCTTCTTTTACATCCAAGCCTTAGCCTTCTTTATCATGGGGTTTGGGTACGTTGGGACATTTGTTCCCACCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009292 GO:0009294 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0043207 GO:0044764 GO:0050896 GO:0051704 GO:0051707 GO:0051753 GO:0070085 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

389

Amino Acids

44.84

Weight (kDa)

9.35

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_2	PF00535	5 - 119	1.1e-07	Glycosyl transferase family 2
Glyco_tranf_2_3	PF13641	26 - 188	9.7e-15	Glycosyltransferase like family 2
Glyco_trans_2_3	PF13632	46 - 238	2.8e-20	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03760
fragaria_vesca	FvH4_6g17730
malus_domestica	MD12G1016200.v1.1 MD14G1014300.v1.1
prunus_persica	Prupe.7G119100_v2.0.a1
pyrus_communis	pycom12g01330 pycom14g01200
rosa_chinensis	RchiOBHm_Chr3g0471961
rosa_laevigata	RLG00000024116
rosa_multiflora	Rmu_sc0000090.1_g000021
rosa_roxburghii	Rroxscaffold_6G00409410
rosa_rugosa	Rorug03G0121400
rosa_samantha	Rh3AG172700 Rh3BG198200 Rh3CG189300 Rh3CG196700 Rh3DG176200
rosa_wichuraiana	Rw3G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AarI	CACCTGC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	892
AciI	CCGC	3 cut(s)	112, 535, 561
AclWI	GGATC	4 cut(s)	447, 832, 845, 929
AcsI	RAATTY	3 cut(s)	473, 632, 983
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	6 cut(s)	53, 80, 520, 747, 871, 1142
AfiI	CCNNNNNNNGG	4 cut(s)	25, 424, 755, 874
AflII	CTTAAG	1 cut(s)	950
AgsI	TTSAA	4 cut(s)	164, 317, 358, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	3 cut(s)	651, 937, 1024
AluI	AGCT	3 cut(s)	651, 937, 1024
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	4 cut(s)	447, 832, 845, 929
AoxI	GGCC	2 cut(s)	103, 528
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	3 cut(s)	473, 632, 983
Asp700I	GAANNNNTTC	1 cut(s)	1008
AspLEI	GCGC	2 cut(s)	820, 976
AspS9I	GGNCC	3 cut(s)	415, 420, 563
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	2 cut(s)	500, 511
AvaII	GGWCC	3 cut(s)	415, 420, 563
BamHI	GGATCC	1 cut(s)	837
BanII	GRGCYC	2 cut(s)	94, 332
BarI	GAAGNNNNNNTAC	2 cut(s)	729, 761
BauI	CACGAG	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	823
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	18, 402
BcnI	CCSGG	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	227, 896
BfmI	CTRYAG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	977
BfrI	CTTAAG	1 cut(s)	950
BfuAI	ACCTGC	1 cut(s)	487
BglI	GCCNNNNNGGC	1 cut(s)	465
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	717
Bme18I	GGWCC	3 cut(s)	415, 420, 563
BmgT120I	GGNCC	3 cut(s)	415, 420, 563
BmiI	GGNNCC	2 cut(s)	171, 839
BmrFI	CCNGG	1 cut(s)	717
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	823
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
BpmI	CTGGAG	1 cut(s)	262
Bpu10I	CCTNAGC	1 cut(s)	1114
BpuMI	CCSGG	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	423, 809
BsaWI	WCCGGW	2 cut(s)	166, 417
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 424, 755, 874
Bse1I	ACTGG	2 cut(s)	79, 300
Bse8I	GATNNNNATC	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	423, 809
BseGI	GGATG	5 cut(s)	204, 413, 768, 1040, 1104
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	4 cut(s)	25, 424, 755, 874
BseNI	ACTGG	2 cut(s)	79, 300
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	1 cut(s)	848
BshFI	GGCC	2 cut(s)	105, 530
BsiSI	CCGG	4 cut(s)	167, 418, 566, 716
BslFI	GGGAC	2 cut(s)	376, 1162
BslI	CCNNNNNNNGG	4 cut(s)	25, 424, 755, 874
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	376, 1162
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	105, 530
Bsp1286I	GDGCHC	2 cut(s)	94, 332
Bsp143I	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
BspACI	CCGC	3 cut(s)	112, 535, 561
BspANI	GGCC	2 cut(s)	105, 530
BspLI	GGNNCC	2 cut(s)	171, 839
BspMAI	CTGCAG	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	4 cut(s)	447, 832, 845, 929
BspQI	GCTCTTC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	950
BsrI	ACTGG	2 cut(s)	79, 300
BssECI	CCNNGG	2 cut(s)	423, 809
BssMI	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	1 cut(s)	809
Bst2BI	CACGAG	1 cut(s)	728
Bst4CI	ACNGT	5 cut(s)	313, 427, 724, 745, 869
Bst6I	CTCTTC	3 cut(s)	337, 497, 1049
BstACI	GRCGYC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	950
BstC8I	GCNNGC	4 cut(s)	31, 238, 457, 1026
BstDEI	CTNAG	2 cut(s)	1114, 1167
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	5 cut(s)	204, 413, 768, 1040, 1104
BstH2I	RGCGCY	1 cut(s)	977
BstHHI	GCGC	2 cut(s)	820, 976
BstKTI	GATC	6 cut(s)	442, 493, 672, 840, 885, 924
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 452, 465
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	823
BstX2I	RGATCY	2 cut(s)	439, 837
BstYI	RGATCY	2 cut(s)	439, 837
BsuRI	GGCC	2 cut(s)	105, 530
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	5 cut(s)	204, 413, 768, 1040, 1104
BtsI	GCAGTG	1 cut(s)	860
BtsIMutI	CAGTG	3 cut(s)	293, 860, 927
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	4 cut(s)	31, 238, 457, 1026
CfoI	GCGC	2 cut(s)	820, 976
Cfr13I	GGNCC	3 cut(s)	415, 420, 563
CpoI	CGGWCCG	1 cut(s)	563
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	6 cut(s)	52, 79, 519, 746, 870, 1141
CspCI	CAANNNNNGTGG	2 cut(s)	533, 568
CspI	CGGWCCG	1 cut(s)	563
CviAII	CATG	5 cut(s)	268, 341, 638, 856, 1129
CviQI	GTAC	6 cut(s)	52, 79, 519, 746, 870, 1141
DdeI	CTNAG	2 cut(s)	1114, 1167
DpnI	GATC	6 cut(s)	441, 492, 671, 839, 884, 923
DpnII	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
Eam1104I	CTCTTC	3 cut(s)	337, 497, 1049
EarI	CTCTTC	3 cut(s)	337, 497, 1049
Eco130I	CCWWGG	1 cut(s)	809
Eco147I	AGGCCT	2 cut(s)	105, 530
Eco24I	GRGCYC	2 cut(s)	94, 332
Eco47I	GGWCC	3 cut(s)	415, 420, 563
Eco57I	CTGAAG	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	809
EcoT22I	ATGCAT	1 cut(s)	346
EcoT38I	GRGCYC	2 cut(s)	94, 332
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	5 cut(s)	271, 344, 641, 859, 1132
FaqI	GGGAC	2 cut(s)	376, 1162
FatI	CATG	5 cut(s)	267, 340, 637, 855, 1128
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	5 cut(s)	191, 420, 755, 1047, 1091
FriOI	GRGCYC	2 cut(s)	94, 332
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	2 cut(s)	227, 896
GlaI	GCGC	2 cut(s)	819, 975
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	977
HaeIII	GGCC	2 cut(s)	105, 530
HapII	CCGG	4 cut(s)	167, 418, 566, 716
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	820, 976
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	271, 344, 641, 859, 1132
Hin6I	GCGC	2 cut(s)	818, 974
HinP1I	GCGC	2 cut(s)	818, 974
HindIII	AAGCTT	1 cut(s)	935
HinfI	GANTC	3 cut(s)	246, 354, 990
HpaII	CCGG	4 cut(s)	167, 418, 566, 716
HphI	GGTGA	2 cut(s)	500, 511
Hpy166II	GTNNAC	3 cut(s)	253, 766, 893
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	5 cut(s)	250, 580, 835, 847, 994
Hpy8I	GTNNAC	3 cut(s)	253, 766, 893
Hpy99I	CGWCG	2 cut(s)	143, 155
HpyAV	CCTTC	5 cut(s)	95, 208, 406, 797, 1129
HpyCH4III	ACNGT	5 cut(s)	313, 427, 724, 745, 869
HpyCH4IV	ACGT	4 cut(s)	120, 138, 852, 1143
HpyCH4V	TGCA	8 cut(s)	267, 283, 344, 389, 496, 705, 797, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 452, 465
HpyF3I	CTNAG	2 cut(s)	1114, 1167
HpySE526I	ACGT	4 cut(s)	120, 138, 852, 1143
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	271, 344, 641, 859, 1132
HspAI	GCGC	2 cut(s)	818, 974
Kzo9I	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	169, 965
Lsp1109I	GCAGC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	227, 896
MaeII	ACGT	4 cut(s)	120, 138, 852, 1143
MaeIII	GTNAC	4 cut(s)	291, 739, 858, 925
MalI	GATC	6 cut(s)	441, 492, 671, 839, 884, 923
MboI	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
MflI	RGATCY	2 cut(s)	439, 837
MhlI	GDGCHC	2 cut(s)	94, 332
MluCI	AATT	6 cut(s)	381, 473, 509, 632, 780, 983
MmeI	TCCRAC	1 cut(s)	573
MnlI	CCTC	4 cut(s)	391, 470, 892, 1079
Mph1103I	ATGCAT	1 cut(s)	346
MroXI	GAANNNNTTC	1 cut(s)	1008
MseI	TTAA	2 cut(s)	792, 951
MslI	CAYNNNNRTG	1 cut(s)	684
MspCI	CTTAAG	1 cut(s)	950
MspI	CCGG	4 cut(s)	167, 418, 566, 716
MspR9I	CCNGG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	111, 452, 465
NciI	CCSGG	1 cut(s)	717
NdeII	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
NlaIII	CATG	5 cut(s)	271, 344, 641, 859, 1132
NlaIV	GGNNCC	2 cut(s)	171, 839
NmuCI	GTSAC	3 cut(s)	291, 858, 925
NsiI	ATGCAT	1 cut(s)	346
PaqCI	CACCTGC	1 cut(s)	487
PceI	AGGCCT	2 cut(s)	105, 530
PciSI	GCTCTTC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PctI	GAATGC	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	1008
PfeI	GAWTC	3 cut(s)	246, 354, 990
PkrI	GCNGC	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	602
PspFI	CCCAGC	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	171, 839
PspPI	GGNCC	3 cut(s)	415, 420, 563
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
PstI	CTGCAG	1 cut(s)	498
PsuI	RGATCY	2 cut(s)	439, 837
RsaI	GTAC	6 cut(s)	53, 80, 520, 747, 871, 1142
RsaNI	GTAC	6 cut(s)	52, 79, 519, 746, 870, 1141
RseI	CAYNNNNRTG	1 cut(s)	684
Rsr2I	CGGWCCG	1 cut(s)	563
RsrII	CGGWCCG	1 cut(s)	563
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	792, 951
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	6 cut(s)	439, 490, 669, 837, 882, 921
Sau96I	GGNCC	3 cut(s)	415, 420, 563
ScaI	AGTACT	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	717
SduI	GDGCHC	2 cut(s)	94, 332
SfcI	CTRYAG	1 cut(s)	494
SinI	GGWCC	3 cut(s)	415, 420, 563
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
Sse9I	AATT	6 cut(s)	381, 473, 509, 632, 780, 983
SseBI	AGGCCT	2 cut(s)	105, 530
SsiI	CCGC	3 cut(s)	112, 535, 561
SspMI	CTAG	2 cut(s)	227, 896
StuI	AGGCCT	2 cut(s)	105, 530
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	5 cut(s)	313, 427, 724, 745, 869
TaiI	ACGT	4 cut(s)	123, 141, 855, 1146
TaqI	TCGA	4 cut(s)	150, 451, 846, 988
TasI	AATT	6 cut(s)	381, 473, 509, 632, 780, 983
TatI	WGTACW	1 cut(s)	518
TfiI	GAWTC	3 cut(s)	246, 354, 990
Tru1I	TTAA	2 cut(s)	792, 951
Tru9I	TTAA	2 cut(s)	792, 951
TscAI	CASTG	3 cut(s)	300, 867, 934
TseFI	GTSAC	3 cut(s)	291, 858, 925
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	3 cut(s)	291, 858, 925
TspDTI	ATGAA	5 cut(s)	193, 626, 930, 1001, 1081
TspRI	CASTG	3 cut(s)	300, 867, 934
Vha464I	CTTAAG	1 cut(s)	950
VpaK11BI	GGWCC	3 cut(s)	415, 420, 563
XapI	RAATTY	3 cut(s)	473, 632, 983
XmiI	GTMKAC	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	1008
XspI	CTAG	2 cut(s)	227, 896
ZrmI	AGTACT	1 cut(s)	520
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.