MD12G1016200.v1.1

Glucomannan 4-beta-mannosyltransferase 9-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
1621188 .. 1627270
6083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1016200.v1.1.491

Sequence Viewer

Length: 1605 bp
ATGGAGCGGCTGTCGACGGCGGCGAAGCTCCCGGATTCATTTTTTGGCGGCAGAGACGACATTTCCATGCAAATGGGGTTGATTTGGAGCCAGATCAAAGCCCCACTGATCGTTCCTTTGCTGCGGCTCGCCGTCGTTCTGTGTATGATCATGTCGGTGATGCTCTTCGTCGAGCGGCTGTACATGGCGGTCGTCATCGTTCTGATCAAGTTGTTCGGGCGGAAGCCGGAGAAAAGGTACAAATGGGAGCCCATGAAAGATGACGTGGAGCTCGGAAACTCGGCTTATCCAATGGTTCTGGTTCAAATCCCAATGTACAATGAAAGAGAGGTTTATCAGCTTTCAATTGGAGCTGCATGTGGGCTTTCATGGCCCTCCGATAGGATCATCATCCAAGTCCTTGATGATTCAACTGACCCAACCATCAAGGACATGGTGGAGTTGGAGTGCCAAAGGTGGGCAAGCAAGGGGATAAACATTAAGTACGAAATAAGAGACAACAGAAATGGCTACAAAGCTGGGGCTCTCAAAGAAGGCATGAAGCGCAGCTACGTCAAAAGCTGCGATTTTGTGGCCATTTTTGACGCGGATTTCCAGCCGGAGCCCGACTTTCTGTGGCGGACGATCCCCTTCCTCCTCCACAACCCTGAGCTCGCACTCGTCCAGACTCGCTGGAAGTTCGTGAATTCAAACGAGTGCTTGATGACAAGAATGCAAGAAATGTCACTGGATTATCATTTTACTGTTGAACAAGAAGTGGGCTCCTCCACTCATGCCTTCTTTGGATTCAATGGGACTGCTGGTGTATGGAGAATTGCTGCGATCAATGAAGCCGGAGGATGGAAGGACCGGACAACAGTGGAAGATATGGATCTGGCTGTTCGAGCGAGTCTCCAAGGCTGGAAATTTGTATATCTTGGTAGTATACAGGTGAAGAATGAATTGCCAAGCACTTTCAAAGCCTACCGCTACCAACAGCACAGGTGGTCTTGCGGTCCAGCTAATCTTTTCAGGAAAATGGTCATGGAAATTATAAGGAACAAGAAAGTAACATTCTGGAAGAAGGTACATGTGATTTACAGCTTCTTCTTCGTCAGGAAGATCATAGCGCATATCAACGCGTTTGTATTTTACTGCATTGTCTTGCCCGCAACTGTCCTGGTTCCTGAGGTTGTGGTGCCAAAGTGGGGAGGAATTTATATTCCTTCCTTGATTACCCTTCTCAATGCAGTTGGCACTCCAAGGTCAATCCACTTGTTGGTGTTCTGGATCCTATTTGAGAACATCATGTCACTACACCGTACGAAGGCTACAATTATTGGTCTGCTAGAGGCTAGTCGAGTGAATGAATGGATCGTCACTGAGAAACTTGGAGATGCGCTCAAGACTTTGAAAGTGGCCACAAAATTACCCCGAAAACCTAGATTCAGGATCGGAGAAAGGCTTCATTTGTTAGAGCTAGCTGTTGGATTGTACCTCTTCTTCTGTGGCTGTTACGATTTCATCTTTGGGAAGAACTACTTCTACCTGTTCCTTTACATCCAAGCAACTGCCTTCTTTATCATTGGTTTCGGGTATGTTGGGACATTCGTTCCCAACTCTTAA

Protein Analysis

535

Amino Acids

61.52

Weight (kDa)

9.2

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 97 - 332 1.1e-14 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 102 - 262 4.1e-11 Glycosyl transferase family 2
Glyco_trans_2_3 PF13632 191 - 385 1.1e-20 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012740)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1034
AccB1I GGYRCC 1 cut(s) 1177
AccB7I CCANNNNNTGG 1 cut(s) 1258
AccBSI CCGCTC 2 cut(s) 7, 175
AccI GTMKAC 2 cut(s) 14, 925
AccII CGCG 2 cut(s) 587, 1121
AclWI GGATC 7 cut(s) 392, 619, 879, 1264, 1277, 1361, 1439
AcoI YGGCCR 2 cut(s) 573, 1398
AcsI RAATTY 3 cut(s) 685, 905, 1194
AfaI GTAC 7 cut(s) 182, 239, 317, 485, 1068, 1303, 1475
AfiI CCNNNNNNNGG 6 cut(s) 381, 457, 840, 1187, 1258, 1306
AflIII ACRYGT 2 cut(s) 1069, 1119
AgsI TTSAA 8 cut(s) 305, 345, 411, 690, 749, 790, 958, 1393
AjiI CACGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 1158
Alw21I GWGCWC 2 cut(s) 273, 654
Alw26I GTCTC 3 cut(s) 48, 489, 896
AlwI GGATC 7 cut(s) 392, 619, 879, 1264, 1277, 1361, 1439
AoxI GGCC 3 cut(s) 371, 573, 1398
ApeKI GCWGC 5 cut(s) 121, 353, 546, 561, 818
ApoI RAATTY 3 cut(s) 685, 905, 1194
Asp700I GAANNNNTTC 2 cut(s) 1443, 1520
AspLEI GCGC 3 cut(s) 546, 1111, 1381
AspS9I GGNCC 3 cut(s) 372, 847, 995
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 169, 943
AsuNHI GCTAGC 1 cut(s) 1459
AvaII GGWCC 2 cut(s) 847, 995
AxyI CCTNAGG 1 cut(s) 1167
BalI TGGCCA 2 cut(s) 575, 1400
BamHI GGATCC 1 cut(s) 1269
BanI GGYRCC 1 cut(s) 1177
BanII GRGCYC 6 cut(s) 252, 273, 526, 606, 654, 764
BarI GAAGNNNNNNTAC 4 cut(s) 533, 565, 1466, 1498
Bbv12I GWGCWC 2 cut(s) 273, 654
BbvI GCAGC 5 cut(s) 108, 340, 548, 558, 805
BccI CCATC 2 cut(s) 431, 834
BceAI ACGGC 2 cut(s) 33, 116
BciT130I CCWGG 1 cut(s) 1160
BclI TGATCA 2 cut(s) 147, 204
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 3 cut(s) 48, 489, 896
BfaI CTAG 4 cut(s) 1328, 1335, 1422, 1460
Bme1390I CCNGG 2 cut(s) 32, 1160
Bme18I GGWCC 2 cut(s) 847, 995
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 3 cut(s) 372, 847, 995
BmiI GGNNCC 7 cut(s) 89, 249, 603, 763, 1164, 1179, 1271
BmrFI CCNGG 2 cut(s) 32, 1160
BmsI GCATC 2 cut(s) 150, 1366
BmtI GCTAGC 1 cut(s) 1463
BplI GAGNNNNNCTC 4 cut(s) 876, 908, 1365, 1397
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 1367
BpuMI CCSGG 1 cut(s) 32
BsaBI GATNNNNATC 2 cut(s) 389, 870
BsaJI CCNNGG 2 cut(s) 895, 1241
BsaWI WCCGGW 1 cut(s) 849
BsaXI ACNNNNNCTCC 5 cut(s) 26, 221, 251, 431, 461
Bsc4I CCNNNNNNNGG 6 cut(s) 381, 457, 840, 1187, 1258, 1306
Bse1I ACTGG 1 cut(s) 732
Bse21I CCTNAGG 1 cut(s) 1167
Bse8I GATNNNNATC 2 cut(s) 389, 870
BseBI CCWGG 1 cut(s) 1160
BseDI CCNNGG 2 cut(s) 895, 1241
BseGI GGATG 3 cut(s) 390, 845, 1539
BseJI GATNNNNATC 2 cut(s) 389, 870
BseLI CCNNNNNNNGG 6 cut(s) 381, 457, 840, 1187, 1258, 1306
BseMII CTCAG 3 cut(s) 639, 1158, 1353
BseNI ACTGG 1 cut(s) 732
BseRI GAGGAG 2 cut(s) 626, 754
BseXI GCAGC 5 cut(s) 108, 340, 548, 558, 805
BseYI CCCAGC 1 cut(s) 518
Bsh1236I CGCG 2 cut(s) 587, 1121
Bsh1285I CGRYCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 373, 575, 1400
BshNI GGYRCC 1 cut(s) 1177
BsiEI CGRYCG 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 273, 654
BsiSI CCGG 5 cut(s) 32, 227, 599, 834, 850
BsiWI CGTACG 1 cut(s) 1301
BslFI GGGAC 2 cut(s) 808, 1597
BslI CCNNNNNNNGG 6 cut(s) 381, 457, 840, 1187, 1258, 1306
BsmAI GTCTC 3 cut(s) 48, 489, 896
BsmBI CGTCTC 1 cut(s) 48
BsmFI GGGAC 2 cut(s) 808, 1597
BsmI GAATGC 1 cut(s) 717
BsnI GGCC 3 cut(s) 373, 575, 1400
Bsp1286I GDGCHC 6 cut(s) 252, 273, 526, 606, 654, 764
Bsp1407I TGTACA 2 cut(s) 180, 315
BspANI GGCC 3 cut(s) 373, 575, 1400
BspCNI CTCAG 3 cut(s) 640, 1159, 1354
BspFNI CGCG 2 cut(s) 587, 1121
BspLI GGNNCC 7 cut(s) 89, 249, 603, 763, 1164, 1179, 1271
BspOI GCTAGC 1 cut(s) 1463
BspPI GGATC 7 cut(s) 392, 619, 879, 1264, 1277, 1361, 1439
BspQI GCTCTTC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 1177
BsrBI CCGCTC 2 cut(s) 7, 175
BsrGI TGTACA 2 cut(s) 180, 315
BsrI ACTGG 1 cut(s) 732
BssECI CCNNGG 2 cut(s) 895, 1241
BssNAI GTATAC 1 cut(s) 926
BssT1I CCWWGG 2 cut(s) 895, 1241
Bst1107I GTATAC 1 cut(s) 926
Bst2UI CCWGG 1 cut(s) 1160
Bst4CI ACNGT 4 cut(s) 745, 859, 1156, 1301
Bst6I CTCTTC 2 cut(s) 170, 1484
BstAUI TGTACA 2 cut(s) 180, 315
BstC8I GCNNGC 5 cut(s) 129, 463, 654, 1149, 1461
BstDEI CTNAG 3 cut(s) 648, 1167, 1362
BstENI CCTNNNNNAGG 1 cut(s) 379
BstF5I GGATG 3 cut(s) 390, 845, 1539
BstFNI CGCG 2 cut(s) 587, 1121
BstHHI GCGC 3 cut(s) 546, 1111, 1381
BstMAI GTCTC 3 cut(s) 48, 489, 896
BstMCI CGRYCG 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 370, 543, 884
BstNI CCWGG 1 cut(s) 1160
BstNSI RCATGY 2 cut(s) 360, 1073
BstSCI CCNGG 2 cut(s) 30, 1158
BstUI CGCG 2 cut(s) 587, 1121
BstV1I GCAGC 5 cut(s) 108, 340, 548, 558, 805
BstX2I RGATCY 2 cut(s) 871, 1269
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 2 cut(s) 871, 1269
BstZ17I GTATAC 1 cut(s) 926
Bsu36I CCTNAGG 1 cut(s) 1167
BsuRI GGCC 3 cut(s) 373, 575, 1400
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 390, 845, 1539
BtsIMutI CAGTG 4 cut(s) 104, 725, 864, 1359
Cac8I GCNNGC 5 cut(s) 129, 463, 654, 1149, 1461
CfoI GCGC 3 cut(s) 546, 1111, 1381
Cfr13I GGNCC 3 cut(s) 372, 847, 995
CseI GACGC 1 cut(s) 593
Csp6I GTAC 7 cut(s) 181, 238, 316, 484, 1067, 1302, 1474
CviQI GTAC 7 cut(s) 181, 238, 316, 484, 1067, 1302, 1474
DdeI CTNAG 3 cut(s) 648, 1167, 1362
EaeI YGGCCR 2 cut(s) 573, 1398
Eam1104I CTCTTC 2 cut(s) 170, 1484
EarI CTCTTC 2 cut(s) 170, 1484
EciI GGCGGA 2 cut(s) 235, 634
Ecl136II GAGCTC 2 cut(s) 271, 652
Eco130I CCWWGG 2 cut(s) 895, 1241
Eco24I GRGCYC 6 cut(s) 252, 273, 526, 606, 654, 764
Eco47I GGWCC 2 cut(s) 847, 995
Eco53kI GAGCTC 2 cut(s) 271, 652
Eco81I CCTNAGG 1 cut(s) 1167
EcoICRI GAGCTC 2 cut(s) 271, 652
EcoNI CCTNNNNNAGG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 1158
EcoT14I CCWWGG 2 cut(s) 895, 1241
EcoT38I GRGCYC 6 cut(s) 252, 273, 526, 606, 654, 764
ErhI CCWWGG 2 cut(s) 895, 1241
Esp3I CGTCTC 1 cut(s) 48
FalI AAGNNNNNCTT 2 cut(s) 1505, 1537
FaqI GGGAC 2 cut(s) 808, 1597
FauI CCCGC 1 cut(s) 1156
FbaI TGATCA 2 cut(s) 147, 204
FblI GTMKAC 2 cut(s) 14, 925
FokI GGATG 3 cut(s) 377, 852, 1526
FriOI GRGCYC 6 cut(s) 252, 273, 526, 606, 654, 764
FspBI CTAG 4 cut(s) 1328, 1335, 1422, 1460
GlaI GCGC 3 cut(s) 545, 1110, 1380
GsaI CCCAGC 1 cut(s) 522
HaeIII GGCC 3 cut(s) 373, 575, 1400
HapII CCGG 5 cut(s) 32, 227, 599, 834, 850
HgaI GACGC 1 cut(s) 593
HhaI GCGC 3 cut(s) 546, 1111, 1381
Hin6I GCGC 3 cut(s) 544, 1109, 1379
HinP1I GCGC 3 cut(s) 544, 1109, 1379
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 6 cut(s) 35, 407, 667, 786, 889, 1425
HpaII CCGG 5 cut(s) 32, 227, 599, 834, 850
HphI GGTGA 2 cut(s) 169, 943
Hpy166II GTNNAC 2 cut(s) 15, 926
Hpy188I TCNGA 4 cut(s) 204, 275, 379, 1436
Hpy188III TCNNGA 9 cut(s) 664, 682, 1012, 1057, 1096, 1166, 1267, 1384, 1429
Hpy8I GTNNAC 2 cut(s) 15, 926
Hpy99I CGWCG 3 cut(s) 19, 137, 173
HpyAV CCTTC 9 cut(s) 527, 640, 787, 838, 1057, 1215, 1229, 1300, 1564
HpyCH4III ACNGT 4 cut(s) 745, 859, 1156, 1301
HpyCH4IV ACGT 2 cut(s) 264, 552
HpyCH4V TGCA 5 cut(s) 70, 356, 715, 1137, 1229
HpyF10VI GCNNNNNNNGC 3 cut(s) 370, 543, 884
HpyF3I CTNAG 3 cut(s) 648, 1167, 1362
HpySE526I ACGT 2 cut(s) 264, 552
HspAI GCGC 3 cut(s) 544, 1109, 1379
Ksp22I TGATCA 2 cut(s) 147, 204
LguI GCTCTTC 1 cut(s) 170
LmnI GCTCC 8 cut(s) 4, 33, 87, 247, 268, 350, 601, 767
Lsp1109I GCAGC 5 cut(s) 108, 340, 548, 558, 805
LweI GCATC 2 cut(s) 150, 1366
MaeI CTAG 4 cut(s) 1328, 1335, 1422, 1460
MaeII ACGT 2 cut(s) 264, 552
MaeIII GTNAC 5 cut(s) 723, 1048, 1290, 1357, 1493
MbiI CCGCTC 2 cut(s) 7, 175
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 871, 1269
MhlI GDGCHC 6 cut(s) 252, 273, 526, 606, 654, 764
MlsI TGGCCA 2 cut(s) 575, 1400
MluCI AATT 9 cut(s) 345, 685, 813, 905, 941, 1029, 1194, 1314, 1406
MluI ACGCGT 1 cut(s) 1119
MluNI TGGCCA 2 cut(s) 575, 1400
MlyI GAGTC 2 cut(s) 661, 898
MmeI TCCRAC 2 cut(s) 423, 1447
Mox20I TGGCCA 2 cut(s) 575, 1400
MroXI GAANNNNTTC 2 cut(s) 1443, 1520
MscI TGGCCA 2 cut(s) 575, 1400
MseI TTAA 2 cut(s) 480, 1603
MslI CAYNNNNRTG 3 cut(s) 65, 71, 155
Msp20I TGGCCA 2 cut(s) 575, 1400
MspI CCGG 5 cut(s) 32, 227, 599, 834, 850
MspR9I CCNGG 2 cut(s) 32, 1160
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 1 cut(s) 1160
MvnI CGCG 2 cut(s) 587, 1121
MwoI GCNNNNNNNGC 3 cut(s) 370, 543, 884
NciI CCSGG 1 cut(s) 32
NheI GCTAGC 1 cut(s) 1459
NlaIV GGNNCC 7 cut(s) 89, 249, 603, 763, 1164, 1179, 1271
NmeAIII GCCGAG 1 cut(s) 260
NmuCI GTSAC 3 cut(s) 723, 1290, 1357
NspI RCATGY 2 cut(s) 360, 1073
PciI ACATGT 1 cut(s) 1069
PciSI GCTCTTC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 717
PdmI GAANNNNTTC 2 cut(s) 1443, 1520
PfeI GAWTC 4 cut(s) 35, 407, 786, 1425
Pfl23II CGTACG 1 cut(s) 1301
PflMI CCANNNNNTGG 1 cut(s) 1258
PfoI TCCNGGA 1 cut(s) 30
PleI GAGTC 2 cut(s) 661, 897
PpsI GAGTC 2 cut(s) 661, 897
PscI ACATGT 1 cut(s) 1069
PsiI TTATAA 1 cut(s) 1034
Psp124BI GAGCTC 2 cut(s) 273, 654
Psp6I CCWGG 1 cut(s) 1158
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 1 cut(s) 1158
PspLI CGTACG 1 cut(s) 1301
PspN4I GGNNCC 7 cut(s) 89, 249, 603, 763, 1164, 1179, 1271
PspPI GGNCC 3 cut(s) 372, 847, 995
PsrI GAACNNNNNNTAC 2 cut(s) 1508, 1540
PsuI RGATCY 2 cut(s) 871, 1269
RsaI GTAC 7 cut(s) 182, 239, 317, 485, 1068, 1303, 1475
RsaNI GTAC 7 cut(s) 181, 238, 316, 484, 1067, 1302, 1474
RseI CAYNNNNRTG 3 cut(s) 65, 71, 155
SacI GAGCTC 2 cut(s) 273, 654
SalI GTCGAC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 480, 1603
Sau96I GGNCC 3 cut(s) 372, 847, 995
SchI GAGTC 2 cut(s) 661, 898
ScrFI CCNGG 2 cut(s) 32, 1160
SduI GDGCHC 6 cut(s) 252, 273, 526, 606, 654, 764
SfaNI GCATC 2 cut(s) 150, 1366
SinI GGWCC 2 cut(s) 847, 995
SmiMI CAYNNNNRTG 3 cut(s) 65, 71, 155
SmlI CTYRAG 1 cut(s) 1382
SmoI CTYRAG 1 cut(s) 1382
Sse9I AATT 9 cut(s) 345, 685, 813, 905, 941, 1029, 1194, 1314, 1406
SspMI CTAG 4 cut(s) 1328, 1335, 1422, 1460
SstI GAGCTC 2 cut(s) 273, 654
StyD4I CCNGG 2 cut(s) 30, 1158
StyI CCWWGG 2 cut(s) 895, 1241
TaaI ACNGT 4 cut(s) 745, 859, 1156, 1301
TaiI ACGT 2 cut(s) 267, 555
TaqI TCGA 4 cut(s) 14, 171, 883, 1339
TasI AATT 9 cut(s) 345, 685, 813, 905, 941, 1029, 1194, 1314, 1406
TatI WGTACW 2 cut(s) 180, 315
TauI GCSGC 5 cut(s) 10, 23, 51, 127, 178
TfiI GAWTC 4 cut(s) 35, 407, 786, 1425
Tru1I TTAA 2 cut(s) 480, 1603
Tru9I TTAA 2 cut(s) 480, 1603
TscAI CASTG 4 cut(s) 111, 732, 864, 1366
TseFI GTSAC 3 cut(s) 723, 1290, 1357
TseI GCWGC 5 cut(s) 121, 353, 546, 561, 818
Tsp45I GTSAC 3 cut(s) 723, 1290, 1357
TspRI CASTG 4 cut(s) 111, 732, 864, 1366
Van91I CCANNNNNTGG 1 cut(s) 1258
VpaK11BI GGWCC 2 cut(s) 847, 995
XagI CCTNNNNNAGG 1 cut(s) 379
XapI RAATTY 3 cut(s) 685, 905, 1194
XceI RCATGY 2 cut(s) 360, 1073
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmiI GTMKAC 2 cut(s) 14, 925
XmnI GAANNNNTTC 2 cut(s) 1443, 1520
XspI CTAG 4 cut(s) 1328, 1335, 1422, 1460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.