Rh3CG196700

Glucomannan 4-beta-mannosyltransferase 9-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
17575183 .. 17579003
3821 bp
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UTR
Exon/CDS
Intron
Rh3CG196700.1

Sequence Viewer

Length: 1602 bp
ATGGAGCGGCTTTCGTCGGCAGCGGTTCTTCCAGACTCATTCATAGGCGCGAGAGATGACATTTTCATGCAATTTGGATTGATTTGGAATCTGATCAAAGCCCCATTGATCGTTCCTCTGCTAAACCTCGGAGTGGTTCTCTGCTTGATCATGGCGGTTATAATCTTCGCCGAGAGGCTTTACATGGGCATTGTCATTGCTCTGGTACACCTTTTCGGGCGAAAACCGGAGAAGCGATACAAATGGGAGCCCATGAAAGATGATGTTGAGTTGGGAAGCTCGACTCATCCCATAGTTCTGGTCCAAATCCCTATGTTCAATGAAAGAGAGGTTTATCAACTTTCAATTGGAGCTGTTTGTGGGCTATCATGGCCTGCTGATAGACTCATCATTCAAGTCCTTGATGATTCAACAGACACAACTATCAAGGCCATGGTAGAGCGAGAGTGCCAAAGATGGGCAAGCAAAGGCATAAACATCAGGTACGAAATCAGAGACAACAGAACTGGGTACAAATCAGGGGCTCTCAAAGAAGGCCTGAACCGCAACTACGTCAAAAACTGCGATTACGTCGCCATTTTCGACGCCGACTTTCAACCGGAGCCAGATTTTCTCTGTCGCACCATTCCCTTCTTCATCCACAACTCCAATATCGCTCTAGTTCAGGCTCGCTGGAGATTCGTGAACTCTAATGAGTGCATGATGACAAGATTGCAAGAAATGTCACTGGATTATCATTTCACAGTTGAACAAGAAGTGGGCTCTTCCACTCATGCATTCTTTGGATTCAATGGGACTGCTGGTGTGTGGAGAATTGCTGCAATCAATGAGGCTGGGGGATGGAAGGACCGGACCACGGTGGAAGATATGGATCTGGCTGTTCGAGCGAGCCTCAAAGGCTGGAAATTTGTATATCTTGGTGATCTGCAGGTGAAGAGTGAATTGCCAAGTACTTTCAAGGCCTACCGCCACCAACAACACAGGTGGTCTTGCGGTCCGGCTAATCTTTTCAGGAAAATGGTGTTGGATATTATAAGAAACAAGAAAGTATCAGTATGGCAAAAATTTCATGTGATTTACAGCTTCTTCTTCGTTAGGAAGATCATAGCACACATCAATGCCTTTTTCTTCTATTGCATTGTCTTGCCGGGAACTGTTCTCGTGCCTGAAGTTACCGTACCAAAGTGGGGTGGAGTTTACATCCCTACCATAATTACCCTTCTTAATGCAGTCGGCACTCCAAGGTCAGCGCACCTGTTGGTCTTCTGGATCCTATTCGAGAACGTCATGTCACTGCACCGTACAAAGGCTACGATCATTGGTCTACTAGAGGGTAGTAGTGTGAATGAATGGATCGTCACTGAAAAGCTTGGAGATATTCTTAAGAATAAAGTAGGAGCAAAAGCGCCCAGAAAATTTCGATTCAGGATTGGAGAAAGGCTTCATTTGACAGAGCTTGCTGTGGGATGTTATCTCTTCTTTTGTGGCTGTTATGATGTCCTCTTTGGCAAAAATAACTACTTCATCTTCTTTTACATCCAAGCCTTAGCCTTCTTTATCATGGGGTTTGGGTACGTTGGGACATTTGTTCCCACCTCTTAG

Protein Analysis

533

Amino Acids

60.99

Weight (kDa)

9.02

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 97 - 332 3.5e-17 Glycosyltransferase like family 2
Glycos_transf_2 PF00535 102 - 263 9.5e-12 Glycosyl transferase family 2
Glyco_trans_2_3 PF13632 190 - 381 4e-20 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012740)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 161, 1034
AarI CACCTGC 1 cut(s) 919
Acc36I ACCTGC 1 cut(s) 919
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 1324
AccII CGCG 1 cut(s) 50
AciI CCGC 6 cut(s) 7, 23, 155, 544, 967, 993
AclWI GGATC 4 cut(s) 879, 1264, 1277, 1361
AcsI RAATTY 3 cut(s) 905, 1064, 1415
AcuI CTGAAG 1 cut(s) 1188
AcyI GRCGYC 1 cut(s) 585
AfaI GTAC 7 cut(s) 207, 485, 512, 952, 1179, 1303, 1574
AfiI CCNNNNNNNGG 5 cut(s) 133, 457, 856, 1187, 1306
AflII CTTAAG 1 cut(s) 1382
AgsI TTSAA 8 cut(s) 319, 345, 395, 411, 596, 749, 790, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 1007, 1039
AluBI AGCT 5 cut(s) 279, 353, 1083, 1369, 1456
AluI AGCT 5 cut(s) 279, 353, 1083, 1369, 1456
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 4 cut(s) 879, 1264, 1277, 1361
AoxI GGCC 4 cut(s) 371, 429, 535, 960
ApeKI GCWGC 2 cut(s) 20, 818
ApoI RAATTY 3 cut(s) 905, 1064, 1415
Asp700I GAANNNNTTC 1 cut(s) 1440
AspLEI GCGC 3 cut(s) 50, 1252, 1408
AspS9I GGNCC 4 cut(s) 301, 847, 852, 995
AsuC2I CCSGG 1 cut(s) 1149
AsuHPI GGTGA 2 cut(s) 932, 943
AvaII GGWCC 4 cut(s) 301, 847, 852, 995
BamHI GGATCC 1 cut(s) 1269
BanII GRGCYC 3 cut(s) 252, 526, 764
BarI GAAGNNNNNNTAC 2 cut(s) 1161, 1193
BauI CACGAG 1 cut(s) 1160
BbsI GAAGAC 1 cut(s) 1255
BbvI GCAGC 2 cut(s) 32, 805
BccI CCATC 2 cut(s) 450, 834
BclI TGATCA 2 cut(s) 93, 147
BcnI CCSGG 1 cut(s) 1149
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 2 cut(s) 659, 1328
BfmI CTRYAG 1 cut(s) 926
BfoI RGCGCY 1 cut(s) 1409
BfrI CTTAAG 1 cut(s) 1382
BfuAI ACCTGC 1 cut(s) 919
BglI GCCNNNNNGGC 1 cut(s) 897
BisI GCNGC 3 cut(s) 8, 21, 819
BlsI GCNGC 3 cut(s) 9, 22, 820
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 1 cut(s) 1149
Bme18I GGWCC 4 cut(s) 301, 847, 852, 995
BmgT120I GGNCC 4 cut(s) 301, 847, 852, 995
BmiI GGNNCC 3 cut(s) 249, 603, 1271
BmrFI CCNGG 1 cut(s) 1149
BmrI ACTGGG 1 cut(s) 516
BmuI ACTGGG 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 1255
BplI GAGNNNNNCTC 4 cut(s) 123, 155, 876, 908
BpmI CTGGAG 1 cut(s) 694
Bpu10I CCTNAGC 1 cut(s) 1546
BpuMI CCSGG 1 cut(s) 1149
BsaBI GATNNNNATC 1 cut(s) 870
BsaHI GRCGYC 1 cut(s) 585
BsaJI CCNNGG 4 cut(s) 127, 432, 855, 1241
BsaWI WCCGGW 3 cut(s) 226, 598, 849
Bsc4I CCNNNNNNNGG 5 cut(s) 133, 457, 856, 1187, 1306
Bse1I ACTGG 2 cut(s) 511, 732
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 870
BseDI CCNNGG 4 cut(s) 127, 432, 855, 1241
BseGI GGATG 6 cut(s) 286, 636, 845, 1200, 1472, 1536
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 5 cut(s) 133, 457, 856, 1187, 1306
BseMI GCAATG 1 cut(s) 195
BseNI ACTGG 2 cut(s) 511, 732
BseXI GCAGC 2 cut(s) 32, 805
BseYI CCCAGC 1 cut(s) 833
BsgI GTGCAG 1 cut(s) 1280
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 4 cut(s) 373, 431, 537, 962
BsiSI CCGG 5 cut(s) 227, 599, 850, 998, 1148
BslFI GGGAC 2 cut(s) 808, 1594
BslI CCNNNNNNNGG 5 cut(s) 133, 457, 856, 1187, 1306
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 2 cut(s) 808, 1594
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 4 cut(s) 373, 431, 537, 962
Bsp1286I GDGCHC 3 cut(s) 252, 526, 764
Bsp143I GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 6 cut(s) 7, 23, 155, 544, 967, 993
BspANI GGCC 4 cut(s) 373, 431, 537, 962
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 3 cut(s) 249, 603, 1271
BspMAI CTGCAG 1 cut(s) 930
BspMI ACCTGC 1 cut(s) 919
BspPI GGATC 4 cut(s) 879, 1264, 1277, 1361
BspQI GCTCTTC 1 cut(s) 769
BspTI CTTAAG 1 cut(s) 1382
BsrBI CCGCTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 511, 732
BssECI CCNNGG 4 cut(s) 127, 432, 855, 1241
BssMI GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
BssNI GRCGYC 1 cut(s) 585
BssSI CACGAG 1 cut(s) 1160
BssT1I CCWWGG 2 cut(s) 432, 1241
Bst2BI CACGAG 1 cut(s) 1160
Bst4CI ACNGT 5 cut(s) 745, 859, 1156, 1177, 1301
Bst6I CTCTTC 3 cut(s) 769, 929, 1481
BstACI GRCGYC 1 cut(s) 585
BstAFI CTTAAG 1 cut(s) 1382
BstC8I GCNNGC 5 cut(s) 375, 463, 670, 889, 1458
BstDEI CTNAG 2 cut(s) 1546, 1599
BstDSI CCRYGG 2 cut(s) 432, 855
BstF5I GGATG 6 cut(s) 286, 636, 845, 1200, 1472, 1536
BstFNI CGCG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 1409
BstHHI GCGC 3 cut(s) 50, 1252, 1408
BstKTI GATC 9 cut(s) 96, 111, 150, 874, 925, 1104, 1272, 1317, 1356
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
BstMWI GCNNNNNNNGC 4 cut(s) 370, 543, 884, 897
BstSCI CCNGG 1 cut(s) 1147
BstSFI CTRYAG 1 cut(s) 926
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 32, 805
BstV2I GAAGAC 1 cut(s) 1255
BstX2I RGATCY 2 cut(s) 871, 1269
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 2 cut(s) 871, 1269
BsuRI GGCC 4 cut(s) 373, 431, 537, 962
BtgI CCRYGG 2 cut(s) 432, 855
BtsCI GGATG 6 cut(s) 286, 636, 845, 1200, 1472, 1536
BtsI GCAGTG 1 cut(s) 1292
BtsIMutI CAGTG 3 cut(s) 725, 1292, 1359
BveI ACCTGC 1 cut(s) 919
Cac8I GCNNGC 5 cut(s) 375, 463, 670, 889, 1458
CfoI GCGC 3 cut(s) 50, 1252, 1408
Cfr13I GGNCC 4 cut(s) 301, 847, 852, 995
CpoI CGGWCCG 1 cut(s) 995
CseI GACGC 1 cut(s) 593
Csp6I GTAC 7 cut(s) 206, 484, 511, 951, 1178, 1302, 1573
CspCI CAANNNNNGTGG 2 cut(s) 965, 1000
CspI CGGWCCG 1 cut(s) 995
CviQI GTAC 7 cut(s) 206, 484, 511, 951, 1178, 1302, 1573
DdeI CTNAG 2 cut(s) 1546, 1599
DpnI GATC 9 cut(s) 95, 110, 149, 873, 924, 1103, 1271, 1316, 1355
DpnII GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
Eam1104I CTCTTC 3 cut(s) 769, 929, 1481
EarI CTCTTC 3 cut(s) 769, 929, 1481
Eco130I CCWWGG 2 cut(s) 432, 1241
Eco147I AGGCCT 2 cut(s) 537, 962
Eco24I GRGCYC 3 cut(s) 252, 526, 764
Eco47I GGWCC 4 cut(s) 301, 847, 852, 995
Eco57I CTGAAG 1 cut(s) 1188
EcoT14I CCWWGG 2 cut(s) 432, 1241
EcoT22I ATGCAT 1 cut(s) 778
EcoT38I GRGCYC 3 cut(s) 252, 526, 764
ErhI CCWWGG 2 cut(s) 432, 1241
FaqI GGGAC 2 cut(s) 808, 1594
FbaI TGATCA 2 cut(s) 93, 147
FblI GTMKAC 1 cut(s) 1324
Fnu4HI GCNGC 3 cut(s) 8, 21, 819
FokI GGATG 6 cut(s) 273, 623, 852, 1187, 1479, 1523
FriOI GRGCYC 3 cut(s) 252, 526, 764
Fsp4HI GCNGC 3 cut(s) 8, 21, 819
FspBI CTAG 2 cut(s) 659, 1328
GlaI GCGC 3 cut(s) 49, 1251, 1407
GluI GCNGC 3 cut(s) 8, 21, 819
GsaI CCCAGC 1 cut(s) 837
GsuI CTGGAG 1 cut(s) 694
HaeII RGCGCY 1 cut(s) 1409
HaeIII GGCC 4 cut(s) 373, 431, 537, 962
HapII CCGG 5 cut(s) 227, 599, 850, 998, 1148
HgaI GACGC 1 cut(s) 593
HhaI GCGC 3 cut(s) 50, 1252, 1408
Hin1I GRCGYC 1 cut(s) 585
Hin6I GCGC 3 cut(s) 48, 1250, 1406
HinP1I GCGC 3 cut(s) 48, 1250, 1406
HindIII AAGCTT 1 cut(s) 1367
HinfI GANTC 8 cut(s) 35, 88, 283, 384, 407, 678, 786, 1422
HpaII CCGG 5 cut(s) 227, 599, 850, 998, 1148
HphI GGTGA 2 cut(s) 932, 943
Hpy166II GTNNAC 4 cut(s) 208, 685, 1198, 1325
Hpy188I TCNGA 3 cut(s) 93, 131, 494
Hpy188III TCNNGA 6 cut(s) 32, 682, 1012, 1267, 1279, 1426
Hpy8I GTNNAC 4 cut(s) 208, 685, 1198, 1325
Hpy99I CGWCG 3 cut(s) 19, 575, 587
HpyAV CCTTC 5 cut(s) 527, 640, 838, 1229, 1561
HpyCH4III ACNGT 5 cut(s) 745, 859, 1156, 1177, 1301
HpyCH4IV ACGT 4 cut(s) 552, 570, 1284, 1575
HpyCH4V TGCA 9 cut(s) 70, 699, 715, 776, 821, 928, 1137, 1229, 1297
HpyF10VI GCNNNNNNNGC 4 cut(s) 370, 543, 884, 897
HpyF3I CTNAG 2 cut(s) 1546, 1599
HpySE526I ACGT 4 cut(s) 552, 570, 1284, 1575
Hsp92I GRCGYC 1 cut(s) 585
HspAI GCGC 3 cut(s) 48, 1250, 1406
Ksp22I TGATCA 2 cut(s) 93, 147
Kzo9I GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
LguI GCTCTTC 1 cut(s) 769
LmnI GCTCC 5 cut(s) 4, 247, 350, 601, 1397
Lsp1109I GCAGC 2 cut(s) 32, 805
MaeI CTAG 2 cut(s) 659, 1328
MaeII ACGT 4 cut(s) 552, 570, 1284, 1575
MaeIII GTNAC 4 cut(s) 723, 1171, 1290, 1357
MalI GATC 9 cut(s) 95, 110, 149, 873, 924, 1103, 1271, 1316, 1355
MbiI CCGCTC 1 cut(s) 7
MboI GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 871, 1269
MhlI GDGCHC 3 cut(s) 252, 526, 764
MluCI AATT 8 cut(s) 71, 345, 813, 905, 941, 1064, 1212, 1415
MlyI GAGTC 3 cut(s) 29, 277, 378
MmeI TCCRAC 1 cut(s) 1005
MnlI CCTC 8 cut(s) 126, 137, 168, 322, 823, 902, 1324, 1511
Mph1103I ATGCAT 1 cut(s) 778
MroXI GAANNNNTTC 1 cut(s) 1440
MseI TTAA 2 cut(s) 1224, 1383
MslI CAYNNNNRTG 2 cut(s) 65, 1116
MspA1I CMGCKG 1 cut(s) 23
MspCI CTTAAG 1 cut(s) 1382
MspI CCGG 5 cut(s) 227, 599, 850, 998, 1148
MspR9I CCNGG 1 cut(s) 1149
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 776
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 4 cut(s) 370, 543, 884, 897
NciI CCSGG 1 cut(s) 1149
NcoI CCATGG 1 cut(s) 432
NdeII GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
NlaIV GGNNCC 3 cut(s) 249, 603, 1271
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 3 cut(s) 723, 1290, 1357
NsiI ATGCAT 1 cut(s) 778
PaqCI CACCTGC 1 cut(s) 919
PceI AGGCCT 2 cut(s) 537, 962
PciSI GCTCTTC 1 cut(s) 769
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PctI GAATGC 1 cut(s) 776
PdmI GAANNNNTTC 1 cut(s) 1440
PfeI GAWTC 5 cut(s) 88, 407, 678, 786, 1422
PkrI GCNGC 3 cut(s) 9, 22, 820
PleI GAGTC 3 cut(s) 29, 277, 378
PpsI GAGTC 3 cut(s) 29, 277, 378
PsiI TTATAA 2 cut(s) 161, 1034
PspFI CCCAGC 1 cut(s) 833
PspN4I GGNNCC 3 cut(s) 249, 603, 1271
PspPI GGNCC 4 cut(s) 301, 847, 852, 995
PsrI GAACNNNNNNTAC 2 cut(s) 533, 565
PstI CTGCAG 1 cut(s) 930
PsuI RGATCY 2 cut(s) 871, 1269
RsaI GTAC 7 cut(s) 207, 485, 512, 952, 1179, 1303, 1574
RsaNI GTAC 7 cut(s) 206, 484, 511, 951, 1178, 1302, 1573
RseI CAYNNNNRTG 2 cut(s) 65, 1116
Rsr2I CGGWCCG 1 cut(s) 995
RsrII CGGWCCG 1 cut(s) 995
SapI GCTCTTC 1 cut(s) 769
SaqAI TTAA 2 cut(s) 1224, 1383
SatI GCNGC 3 cut(s) 8, 21, 819
Sau3AI GATC 9 cut(s) 93, 108, 147, 871, 922, 1101, 1269, 1314, 1353
Sau96I GGNCC 4 cut(s) 301, 847, 852, 995
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 3 cut(s) 29, 277, 378
ScrFI CCNGG 1 cut(s) 1149
SduI GDGCHC 3 cut(s) 252, 526, 764
SfcI CTRYAG 1 cut(s) 926
SinI GGWCC 4 cut(s) 301, 847, 852, 995
SmiMI CAYNNNNRTG 2 cut(s) 65, 1116
SmlI CTYRAG 1 cut(s) 1382
SmoI CTYRAG 1 cut(s) 1382
Sse9I AATT 8 cut(s) 71, 345, 813, 905, 941, 1064, 1212, 1415
SseBI AGGCCT 2 cut(s) 537, 962
SsiI CCGC 6 cut(s) 7, 23, 155, 544, 967, 993
SspMI CTAG 2 cut(s) 659, 1328
StuI AGGCCT 2 cut(s) 537, 962
StyD4I CCNGG 1 cut(s) 1147
StyI CCWWGG 2 cut(s) 432, 1241
TaaI ACNGT 5 cut(s) 745, 859, 1156, 1177, 1301
TaiI ACGT 4 cut(s) 555, 573, 1287, 1578
TaqI TCGA 5 cut(s) 281, 582, 883, 1278, 1420
TasI AATT 8 cut(s) 71, 345, 813, 905, 941, 1064, 1212, 1415
TatI WGTACW 1 cut(s) 950
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 5 cut(s) 88, 407, 678, 786, 1422
Tru1I TTAA 2 cut(s) 1224, 1383
Tru9I TTAA 2 cut(s) 1224, 1383
TscAI CASTG 3 cut(s) 732, 1299, 1366
TseFI GTSAC 3 cut(s) 723, 1290, 1357
TseI GCWGC 2 cut(s) 20, 818
Tsp45I GTSAC 3 cut(s) 723, 1290, 1357
TspDTI ATGAA 9 cut(s) 31, 55, 269, 336, 625, 1058, 1362, 1433, 1513
TspRI CASTG 3 cut(s) 732, 1299, 1366
Vha464I CTTAAG 1 cut(s) 1382
VpaK11BI GGWCC 4 cut(s) 301, 847, 852, 995
XapI RAATTY 3 cut(s) 905, 1064, 1415
XmiI GTMKAC 1 cut(s) 1324
XmnI GAANNNNTTC 1 cut(s) 1440
XspI CTAG 2 cut(s) 659, 1328
ZrmI AGTACT 1 cut(s) 952
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.