Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1024500 .. 1025872

Gene Structure 1373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGAATATGGGAACTAGAGTGATAGAGCCATTGATAATGGGGAGAGTGGTAGGAGATGTTCTTGATTTCTTCACTCCAACAACTAAGATGAATGTTAGTTATAACAAGAAGCAAGTCTCCAATGGCCATGAGCTCTTTCCTTCTTCTGTTTCCTCCAAGCCTAGGGTTGAGATCCATGGTGGTGATCTCAGATCCTTCTTCACTTTGGTGATGATAGACCCAGATGTTCCAGGTCCTAGTGACCCCTTTCTAAAAGAACACCTGCACTGGATCGTTACAAACATTCCCGGCACAACAGATGCTACGTTTGGCAAAGAGGTGGTGAGCTATGAATTGCCAAGGCCAAGCATAGGGATACATAGGTTTGTGTTTGTTCTGTTCAGGCAGAAGCAAAGACGTGTTATCTTTCCTAATATCCCTTCGAGAGATCACTTCAACACTCGTAAATTTGCGGTCGAGTATGATCTTGGTCTCCCTGTCGCGGCCGTCTTCTTTAACGCACAAAGAGAAACCGCTGCACGCAAACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

177

Amino Acids

20.16

Weight (kDa)

9.69

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	55 - 159	4.9e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AarI	CACCTGC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	273
AccII	CGCG	1 cut(s)	485
AciI	CCGC	3 cut(s)	455, 485, 516
AclWI	GGATC	3 cut(s)	169, 189, 281
AcoI	YGGCCR	2 cut(s)	127, 486
AcsI	RAATTY	1 cut(s)	449
AfiI	CCNNNNNNNGG	3 cut(s)	165, 353, 484
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	2 cut(s)	136, 330
AluI	AGCT	2 cut(s)	136, 330
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	124, 479
AlwI	GGATC	3 cut(s)	169, 189, 281
AoxI	GGCC	3 cut(s)	127, 344, 486
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	1 cut(s)	449
AspA2I	CCTAGG	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	197, 223, 337
AvaII	GGWCC	1 cut(s)	236
AvrII	CCTAGG	1 cut(s)	164
BaeI	ACNNNNGTAYC	2 cut(s)	350, 383
BalI	TGGCCA	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	505
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	124, 479
BfaI	CTAG	4 cut(s)	18, 165, 240, 532
BfuAI	ACCTGC	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	351
BisI	GCNGC	2 cut(s)	486, 519
BlnI	CCTAGG	1 cut(s)	164
BlsI	GCNGC	2 cut(s)	487, 520
Bme1390I	CCNGG	2 cut(s)	234, 291
Bme18I	GGWCC	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	2 cut(s)	234, 291
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	164, 178, 341
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 353, 484
Bse1I	ACTGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	164, 178, 341
BseLI	CCNNNNNNNGG	3 cut(s)	165, 353, 484
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	505
BsgI	GTGCAG	2 cut(s)	251, 504
Bsh1236I	CGCG	1 cut(s)	485
Bsh1285I	CGRYCG	2 cut(s)	459, 489
BshFI	GGCC	3 cut(s)	129, 346, 488
BsiEI	CGRYCG	2 cut(s)	459, 489
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	165, 353, 484
BsmAI	GTCTC	2 cut(s)	124, 479
BsnI	GGCC	3 cut(s)	129, 346, 488
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	3 cut(s)	455, 485, 516
BspANI	GGCC	3 cut(s)	129, 346, 488
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	485
BspMI	ACCTGC	1 cut(s)	273
BspPI	GGATC	3 cut(s)	169, 189, 281
BspTNI	GGTCTC	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	164, 178, 341
BssMI	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
BssT1I	CCWWGG	3 cut(s)	164, 178, 341
Bst2UI	CCWGG	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	523
BstDEI	CTNAG	2 cut(s)	87, 191
BstDSI	CCRYGG	1 cut(s)	178
BstFNI	CGCG	1 cut(s)	485
BstKTI	GATC	6 cut(s)	177, 190, 197, 276, 433, 469
BstMAI	GTCTC	2 cut(s)	124, 479
BstMBI	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
BstMCI	CGRYCG	2 cut(s)	459, 489
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	232, 289
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	484
BstX2I	RGATCY	2 cut(s)	174, 194
BstYI	RGATCY	2 cut(s)	174, 194
BstZI	CGGCCG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	129, 346, 488
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	2 cut(s)	131, 179
CviJI	RGCY	7 cut(s)	31, 129, 136, 163, 330, 346, 488
CviKI_1	RGCY	7 cut(s)	31, 129, 136, 163, 330, 346, 488
DdeI	CTNAG	2 cut(s)	87, 191
DpnI	GATC	6 cut(s)	176, 189, 196, 275, 432, 468
DpnII	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
EaeI	YGGCCR	2 cut(s)	127, 486
EagI	CGGCCG	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	136
EclXI	CGGCCG	1 cut(s)	486
Eco130I	CCWWGG	3 cut(s)	164, 178, 341
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	236
Eco52I	CGGCCG	1 cut(s)	486
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	3 cut(s)	164, 178, 341
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	3 cut(s)	164, 178, 341
FaeI	CATG	2 cut(s)	134, 182
FaiI	YATR	8 cut(s)	11, 105, 132, 180, 333, 353, 363, 465
FatI	CATG	2 cut(s)	130, 178
Fnu4HI	GCNGC	2 cut(s)	486, 519
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	486, 519
FspBI	CTAG	4 cut(s)	18, 165, 240, 532
GluI	GCNGC	2 cut(s)	486, 519
HaeIII	GGCC	3 cut(s)	129, 346, 488
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	2 cut(s)	134, 182
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	3 cut(s)	197, 223, 337
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	2 cut(s)	65, 426
HpyAV	CCTTC	3 cut(s)	153, 208, 432
HpyCH4IV	ACGT	2 cut(s)	308, 400
HpyCH4V	TGCA	2 cut(s)	268, 521
HpyF3I	CTNAG	2 cut(s)	87, 191
HpySE526I	ACGT	2 cut(s)	308, 400
Hsp92II	CATG	2 cut(s)	134, 182
Kzo9I	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
LpnPI	CCDG	8 cut(s)	219, 237, 246, 256, 278, 304, 370, 492
Lsp1109I	GCAGC	1 cut(s)	505
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	4 cut(s)	18, 165, 240, 532
MaeII	ACGT	2 cut(s)	308, 400
MaeIII	GTNAC	2 cut(s)	242, 277
MalI	GATC	6 cut(s)	176, 189, 196, 275, 432, 468
MboI	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
MboII	GAAGA	4 cut(s)	64, 138, 193, 484
MflI	RGATCY	2 cut(s)	174, 194
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	2 cut(s)	335, 449
MluNI	TGGCCA	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	166, 313
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	183, 209
Msp20I	TGGCCA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	234, 291
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	485
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
NlaIII	CATG	2 cut(s)	134, 182
NmuCI	GTSAC	1 cut(s)	242
OliI	CACNNNNGTG	1 cut(s)	209
PaqCI	CACCTGC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	487, 520
PpuMI	RGGWCCY	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	1 cut(s)	236
PspPPI	RGGWCCY	1 cut(s)	236
PsrI	GAACNNNNNNTAC	2 cut(s)	45, 77
PsuI	RGATCY	2 cut(s)	174, 194
RseI	CAYNNNNRTG	2 cut(s)	183, 209
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	486, 519
Sau3AI	GATC	6 cut(s)	174, 187, 194, 273, 430, 466
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	234, 291
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	138, 238, 267, 311, 324, 332, 368, 403
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	183, 209
Sse9I	AATT	2 cut(s)	335, 449
SsiI	CCGC	3 cut(s)	455, 485, 516
SspMI	CTAG	4 cut(s)	18, 165, 240, 532
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	232, 289
StyI	CCWWGG	3 cut(s)	164, 178, 341
TaiI	ACGT	2 cut(s)	311, 403
TaqI	TCGA	2 cut(s)	425, 459
TasI	AATT	2 cut(s)	335, 449
TauI	GCSGC	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	107, 348
TspRI	CASTG	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	449
XmaJI	CCTAGG	1 cut(s)	164
XspI	CTAG	4 cut(s)	18, 165, 240, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.