Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1976220 .. 1978999

Gene Structure 2780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1021100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAAGAGTCCCGGAGCCTCTAGTTGTTGGGAGAGTGATAGGAGATGTTCTTGATTCCTTCACTCCAACAACACACATGTCTGTTACTTACAACGCCAAGCTAGTCTGCAATGGACTTGAGCTCTTTCCTTCTGTTGTCACAGCCAAACCTAGAGTTGAGATTCAAGGAGGGGAGTTGAGATCTTTCTTTACTTTGGTGATGACAGACCCAGATTGTCCCGGCCCTAGTGACCCTTATCTAAGGGAGCACCTGCACTGGATTGTGACAGACATTCCAGGCACCACAGATGCCGCATTTGGAAGAGAGGCGCTGAGCTATGAGATGCCAAGGCCCAACATTGGCATCCACAGGTTTGTGTTTGTTCTCTTCAAGCAGAAACGAAGACAATCAATCAACATACCTTCCTCAAGGGATTGCTTCAGCACTCGAAGCTTCGCCGCTGAAAATGACCTGGGTCTTCCTGTCGCTGCCGTTTACTTCAATGCGCAGAGAGAAAGTGCAGCTAGAAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

173

Amino Acids

19.24

Weight (kDa)

8.54

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	51 - 159	6.6e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
Acc16I	TGCGCA	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	281
AciI	CCGC	2 cut(s)	294, 441
AcuI	CTGAAG	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	78
AgsI	TTSAA	3 cut(s)	167, 373, 484
AjnI	CCWGG	2 cut(s)	277, 453
AluBI	AGCT	5 cut(s)	103, 124, 318, 435, 506
AluI	AGCT	5 cut(s)	103, 124, 318, 435, 506
Alw21I	GWGCWC	2 cut(s)	126, 252
AoxI	GGCC	2 cut(s)	223, 332
ApeKI	GCWGC	2 cut(s)	470, 503
AspLEI	GCGC	2 cut(s)	313, 490
AspS9I	GGNCC	2 cut(s)	224, 333
AsuC2I	CCSGG	2 cut(s)	14, 222
AsuHPI	GGTGA	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	391, 452
Bbv12I	GWGCWC	2 cut(s)	126, 252
BbvI	GCAGC	2 cut(s)	457, 515
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	2 cut(s)	279, 455
BcnI	CCSGG	2 cut(s)	14, 222
BfaI	CTAG	6 cut(s)	23, 104, 153, 228, 507, 517
BfoI	RGCGCY	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	4 cut(s)	294, 441, 471, 504
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	4 cut(s)	295, 442, 472, 505
Bme1390I	CCNGG	4 cut(s)	14, 222, 279, 455
BmgT120I	GGNCC	2 cut(s)	224, 333
BmiI	GGNNCC	2 cut(s)	18, 283
BmrFI	CCNGG	4 cut(s)	14, 222, 279, 455
BmsI	GCATC	3 cut(s)	280, 315, 354
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	2 cut(s)	391, 452
Bpu1102I	GCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	140, 394
BpuMI	CCSGG	2 cut(s)	14, 222
BsaJI	CCNNGG	2 cut(s)	329, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	279, 455
BseDI	CCNNGG	2 cut(s)	329, 454
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	457, 515
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	225, 334
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	126, 252
BsiSI	CCGG	2 cut(s)	14, 222
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	225, 334
Bsp1286I	GDGCHC	2 cut(s)	126, 252
Bsp143I	GATC	1 cut(s)	182
Bsp1720I	GCTNAGC	1 cut(s)	314
BspACI	CCGC	2 cut(s)	294, 441
BspANI	GGCC	2 cut(s)	225, 334
BspCNI	CTCAG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	18, 283
BspMI	ACCTGC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	329, 454
BssMI	GATC	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	2 cut(s)	279, 455
Bst6I	CTCTTC	2 cut(s)	298, 374
BstDEI	CTNAG	2 cut(s)	242, 314
BstF5I	GGATG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	2 cut(s)	313, 490
BstKTI	GATC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	2 cut(s)	279, 455
BstNSI	RCATGY	1 cut(s)	82
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	4 cut(s)	12, 220, 277, 453
BstV1I	GCAGC	2 cut(s)	457, 515
BstV2I	GAAGAC	2 cut(s)	391, 452
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	225, 334
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	261
CfoI	GCGC	2 cut(s)	313, 490
Cfr13I	GGNCC	2 cut(s)	224, 333
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	9 cut(s)	19, 103, 124, 146, 225, 318, 334, 435, 506
CviKI_1	RGCY	9 cut(s)	19, 103, 124, 146, 225, 318, 334, 435, 506
DdeI	CTNAG	2 cut(s)	242, 314
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	298, 374
EarI	CTCTTC	2 cut(s)	298, 374
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	406
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	277, 453
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	1 cut(s)	82
FaiI	YATR	3 cut(s)	80, 321, 401
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	4 cut(s)	294, 441, 471, 504
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	294, 441, 471, 504
FspBI	CTAG	6 cut(s)	23, 104, 153, 228, 507, 517
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	2 cut(s)	312, 489
GluI	GCNGC	4 cut(s)	294, 441, 471, 504
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	225, 334
HapII	CCGG	2 cut(s)	14, 222
HhaI	GCGC	2 cut(s)	313, 490
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	2 cut(s)	311, 488
HinP1I	GCGC	2 cut(s)	311, 488
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	3 cut(s)	9, 56, 163
HpaII	CCGG	2 cut(s)	14, 222
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	3 cut(s)	70, 141, 414
HpyCH4V	TGCA	3 cut(s)	111, 256, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	2 cut(s)	242, 314
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	2 cut(s)	311, 488
Kzo9I	GATC	1 cut(s)	182
LmnI	GCTCC	2 cut(s)	16, 247
Lsp1109I	GCAGC	2 cut(s)	457, 515
LweI	GCATC	3 cut(s)	280, 315, 354
MaeI	CTAG	6 cut(s)	23, 104, 153, 228, 507, 517
MaeIII	GTNAC	4 cut(s)	85, 139, 230, 265
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	4 cut(s)	315, 361, 396, 452
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	126, 252
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	30, 164, 301, 418
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	14, 222
MspR9I	CCNGG	4 cut(s)	14, 222, 279, 455
MvaI	CCWGG	2 cut(s)	279, 455
MwoI	GCNNNNNNNGC	1 cut(s)	432
NciI	CCSGG	2 cut(s)	14, 222
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	2 cut(s)	18, 283
NmuCI	GTSAC	3 cut(s)	139, 230, 265
NsbI	TGCGCA	1 cut(s)	489
NspI	RCATGY	1 cut(s)	82
PaqCI	CACCTGC	1 cut(s)	261
PciI	ACATGT	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	56, 163
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	295, 442, 472, 505
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	78
PshAI	GACNNNNGTC	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	277, 453
PspGI	CCWGG	2 cut(s)	277, 453
PspN4I	GGNNCC	2 cut(s)	18, 283
PspPI	GGNCC	2 cut(s)	224, 333
PsuI	RGATCY	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	294, 441, 471, 504
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	2 cut(s)	224, 333
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	4 cut(s)	14, 222, 279, 455
SduI	GDGCHC	2 cut(s)	126, 252
SfaNI	GCATC	3 cut(s)	280, 315, 354
SmlI	CTYRAG	2 cut(s)	119, 409
SmoI	CTYRAG	2 cut(s)	119, 409
SsiI	CCGC	2 cut(s)	294, 441
SspMI	CTAG	6 cut(s)	23, 104, 153, 228, 507, 517
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	4 cut(s)	12, 220, 277, 453
StyI	CCWWGG	1 cut(s)	329
TaqI	TCGA	1 cut(s)	430
TauI	GCSGC	2 cut(s)	296, 443
TfiI	GAWTC	2 cut(s)	56, 163
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	3 cut(s)	139, 230, 265
TseI	GCWGC	2 cut(s)	470, 503
Tsp45I	GTSAC	3 cut(s)	139, 230, 265
TspRI	CASTG	1 cut(s)	263
XceI	RCATGY	1 cut(s)	82
XspI	CTAG	6 cut(s)	23, 104, 153, 228, 507, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.