Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Reverse (-)

2414575 .. 2416961

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1023900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAAGAGCCTCGGAGCCTCTGGTTGTTGGGAGAGTGATAGGAGATGTTCTTGATTCCTTCACTGCAACAACAAAAATGTCTGTCACTTACAACACCAAGCTAGTCTGCAATGGACTTGAGCTCTTTCCTTCTGTTGTCACAGCCAAACCTAGAGTTGAGATTCAAGGAGGGGATATGAGATCTTTCTTTACTTTGGTGATGACCGACCCAGATTTTCCAGGCCCTAGTGATCCTTATCTAAGGGAGCACCTGCACTGGATTGTGACAGACATTCCAGGCACCACAGATGCCACATTTGGAAGAGAGGTGGTGAGTTATGAGATGCCGAAGCCCAACATTGGCATCCACAGGTTTGTGTTTGTTCTTTTCAAGCAGAATCAAAGACAATCAATCAACACACCTTCCTCGAGGGATCACTTCAGCACTCGAAGCTTCGCGGCTGAAAATGACCTGGGTCTTCCTGTCGCTGCCGTCTACTTCAACGCGCAGAGAGAAACTGCAGCTAGAAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

173

Amino Acids

19.31

Weight (kDa)

8.82

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	50 - 160	6.4e-12	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
AbsI	CCTCGAGG	1 cut(s)	409
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	477
AccII	CGCG	2 cut(s)	440, 488
AciI	CCGC	1 cut(s)	440
AclWI	GGATC	2 cut(s)	227, 423
AcuI	CTGAAG	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	167, 373, 484
AjnI	CCWGG	3 cut(s)	220, 277, 453
AluBI	AGCT	4 cut(s)	103, 124, 435, 506
AluI	AGCT	4 cut(s)	103, 124, 435, 506
Alw21I	GWGCWC	2 cut(s)	126, 252
AlwI	GGATC	2 cut(s)	227, 423
Ama87I	CYCGRG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	470, 503
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	211, 325
AvaI	CYCGRG	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	2 cut(s)	126, 252
BbvI	GCAGC	2 cut(s)	457, 515
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	3 cut(s)	222, 279, 455
BfaI	CTAG	5 cut(s)	104, 153, 228, 507, 517
BfmI	CTRYAG	1 cut(s)	501
BfuAI	ACCTGC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	3 cut(s)	441, 471, 504
BlsI	GCNGC	3 cut(s)	442, 472, 505
Bme1390I	CCNGG	3 cut(s)	222, 279, 455
BmeT110I	CYCGRG	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	18, 283
BmrFI	CCNGG	3 cut(s)	222, 279, 455
BmsI	GCATC	3 cut(s)	280, 315, 354
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	12, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	222, 279, 455
BseDI	CCNNGG	2 cut(s)	12, 454
BseGI	GGATG	1 cut(s)	345
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	457, 515
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	2 cut(s)	440, 488
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	126, 252
BsiHKCI	CYCGRG	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	341
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	126, 252
Bsp143I	GATC	3 cut(s)	182, 232, 415
BspACI	CCGC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	440, 488
BspLI	GGNNCC	2 cut(s)	18, 283
BspMAI	CTGCAG	1 cut(s)	505
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	227, 423
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	12, 454
BssMI	GATC	3 cut(s)	182, 232, 415
Bst2UI	CCWGG	3 cut(s)	222, 279, 455
Bst6I	CTCTTC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	2 cut(s)	440, 488
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	185, 235, 418
BstMBI	GATC	3 cut(s)	182, 232, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	3 cut(s)	222, 279, 455
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	3 cut(s)	220, 277, 453
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	2 cut(s)	440, 488
BstV1I	GCAGC	2 cut(s)	457, 515
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 256
BveI	ACCTGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	242
DpnI	GATC	3 cut(s)	184, 234, 417
DpnII	GATC	3 cut(s)	182, 232, 415
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	220, 277, 453
EcoT38I	GRGCYC	1 cut(s)	126
FaiI	YATR	2 cut(s)	179, 321
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	441, 471, 504
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	441, 471, 504
FspBI	CTAG	5 cut(s)	104, 153, 228, 507, 517
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	441, 471, 504
HaeIII	GGCC	1 cut(s)	225
HhaI	GCGC	1 cut(s)	490
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	3 cut(s)	56, 163, 379
HphI	GGTGA	2 cut(s)	211, 325
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	3 cut(s)	70, 141, 414
HpyCH4V	TGCA	4 cut(s)	68, 111, 256, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	1 cut(s)	242
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	182, 232, 415
LmnI	GCTCC	2 cut(s)	16, 247
Lsp1109I	GCAGC	2 cut(s)	457, 515
LweI	GCATC	3 cut(s)	280, 315, 354
MaeI	CTAG	5 cut(s)	104, 153, 228, 507, 517
MaeIII	GTNAC	3 cut(s)	85, 139, 265
MalI	GATC	3 cut(s)	184, 234, 417
MboI	GATC	3 cut(s)	182, 232, 415
MboII	GAAGA	2 cut(s)	315, 452
MflI	RGATCY	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	126, 252
MnlI	CCTC	6 cut(s)	22, 30, 164, 301, 405, 418
MspR9I	CCNGG	3 cut(s)	222, 279, 455
MvaI	CCWGG	3 cut(s)	222, 279, 455
MvnI	CGCG	2 cut(s)	440, 488
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	3 cut(s)	182, 232, 415
NlaIV	GGNNCC	2 cut(s)	18, 283
NmuCI	GTSAC	3 cut(s)	85, 139, 265
PaeR7I	CTCGAG	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	56, 163, 379
PkrI	GCNGC	3 cut(s)	442, 472, 505
PshAI	GACNNNNGTC	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	3 cut(s)	220, 277, 453
PspGI	CCWGG	3 cut(s)	220, 277, 453
PspN4I	GGNNCC	2 cut(s)	18, 283
PspPI	GGNCC	1 cut(s)	224
PspXI	VCTCGAGB	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	505
PsuI	RGATCY	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	126
SatI	GCNGC	3 cut(s)	441, 471, 504
Sau3AI	GATC	3 cut(s)	182, 232, 415
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	3 cut(s)	222, 279, 455
SduI	GDGCHC	2 cut(s)	126, 252
SfaNI	GCATC	3 cut(s)	280, 315, 354
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	409
SlaI	CTCGAG	1 cut(s)	409
SmlI	CTYRAG	2 cut(s)	119, 409
SmoI	CTYRAG	2 cut(s)	119, 409
SsiI	CCGC	1 cut(s)	440
SspMI	CTAG	5 cut(s)	104, 153, 228, 507, 517
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	220, 277, 453
TaqI	TCGA	2 cut(s)	410, 430
TaqII	GACCGA	1 cut(s)	221
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	56, 163, 379
TscAI	CASTG	2 cut(s)	70, 263
TseFI	GTSAC	3 cut(s)	85, 139, 265
TseI	GCWGC	2 cut(s)	470, 503
Tsp45I	GTSAC	3 cut(s)	85, 139, 265
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	70, 263
XhoI	CTCGAG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	5 cut(s)	104, 153, 228, 507, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.