Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Reverse (-)

17202344 .. 17212036

Gene Structure 9693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG182500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCAAGAATGTCGGAACCTTTAGTTGTTGGAAGAGTCATAGGAGATGTTCTTGATTACTTTACCCCAACTACTAAAATGATTGTCACTTACAGCACCAAACTCGTCTTCAATGGACATGAGCTCTTCCCATCTGCAGTCACCGCCAAACCTAGAGTTGAGATTCAAGGAGGCGACATGAGATCATTCTTCACTCTGGTGATGACAGACCCAGATGTTCCTGGCCCTAGTGATCCTTATTTGAAGGAGCACCTGCACTGGATTGTGACAGACATTCCAGGCACCACAGATGTTACATTTGGTAGGTTAATTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

105

Amino Acids

11.72

Weight (kDa)

5.69

Isoelectric Point (pI)

24.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	50 - 96	1.5e-06	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	281
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	112, 167, 244
AjnI	CCWGG	2 cut(s)	220, 277
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw21I	GWGCWC	2 cut(s)	126, 252
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	133, 211
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	126, 252
BccI	CCATC	1 cut(s)	139
BcgI	CGANNNNNNTGC	3 cut(s)	28, 85, 119
BciT130I	CCWGG	2 cut(s)	222, 279
BfaI	CTAG	3 cut(s)	153, 228, 316
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	261
Bme1390I	CCNGG	2 cut(s)	222, 279
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	18, 283
BmrFI	CCNGG	2 cut(s)	222, 279
BpiI	GAAGAC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	263
BseBI	CCWGG	2 cut(s)	222, 279
BseNI	ACTGG	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	126, 252
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	126, 252
Bsp143I	GATC	2 cut(s)	182, 232
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	18, 283
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	2 cut(s)	182, 232
Bst2UI	CCWGG	2 cut(s)	222, 279
Bst6I	CTCTTC	2 cut(s)	28, 131
BstKTI	GATC	2 cut(s)	185, 235
BstMBI	GATC	2 cut(s)	182, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	222, 279
BstSCI	CCNGG	2 cut(s)	220, 277
BstSFI	CTRYAG	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	224
CviAII	CATG	2 cut(s)	119, 178
CviJI	RGCY	2 cut(s)	124, 225
CviKI_1	RGCY	2 cut(s)	124, 225
DpnI	GATC	2 cut(s)	184, 234
DpnII	GATC	2 cut(s)	182, 232
Eam1104I	CTCTTC	2 cut(s)	28, 131
EarI	CTCTTC	2 cut(s)	28, 131
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	220, 277
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	2 cut(s)	122, 181
FaiI	YATR	3 cut(s)	41, 120, 179
FatI	CATG	2 cut(s)	118, 177
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	3 cut(s)	153, 228, 316
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	122, 181
HinfI	GANTC	2 cut(s)	36, 163
HphI	GGTGA	2 cut(s)	133, 211
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	137, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	122, 181
Kzo9I	GATC	2 cut(s)	182, 232
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	8 cut(s)	182, 207, 225, 234, 244, 264, 266, 291
MaeI	CTAG	3 cut(s)	153, 228, 316
MaeIII	GTNAC	4 cut(s)	85, 139, 265, 292
MalI	GATC	2 cut(s)	184, 234
MboI	GATC	2 cut(s)	182, 232
MboII	GAAGA	4 cut(s)	45, 100, 118, 181
MhlI	GDGCHC	2 cut(s)	126, 252
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	222, 279
MvaI	CCWGG	2 cut(s)	222, 279
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	2 cut(s)	182, 232
NlaIII	CATG	2 cut(s)	122, 181
NlaIV	GGNNCC	2 cut(s)	18, 283
NmuCI	GTSAC	3 cut(s)	85, 139, 265
OliI	CACNNNNGTG	1 cut(s)	197
PaqCI	CACCTGC	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	220, 277
PspGI	CCWGG	2 cut(s)	220, 277
PspN4I	GGNNCC	2 cut(s)	18, 283
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	182, 232
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	222, 279
SduI	GDGCHC	2 cut(s)	126, 252
SetI	ASST	5 cut(s)	22, 126, 154, 255, 308
SfcI	CTRYAG	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	3 cut(s)	153, 228, 316
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	220, 277
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	3 cut(s)	85, 139, 265
Tsp45I	GTSAC	3 cut(s)	85, 139, 265
TspRI	CASTG	1 cut(s)	263
XspI	CTAG	3 cut(s)	153, 228, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.