Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Forward (+)

31037870 .. 31038945

Gene Structure 1076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024037

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAAGAATGTCGGAACCTTTAGTTGTTGGAAGAGTCATAGGAGATGTTCTTGATTACTTTACCCCAACTACTAAAATGATTGTCACTTACAGCACCAAACTCGTCTTCAATGGACATGAGCTCTTCCCATCTGCAGTCACCGCCAAACCGAGAGTTGAGATTCAAGGAGGCGACATGAGATCATTCTTCACTCTGGTGATGACAGACCCAGATGTTCCTGGCCCCAGTGATCCTTATTTGAAGGAGCACCTGCACTGGATTGTGACAGACATTCCAGGCACCACAGATGTTACATTTGGAAGAGAGATGGTGAGCTACGAGATGCCAAGGCCAAGCATAGGAATCCACAGGTTTGTGTTTGTTCTTTTCAAGCAGAAACGAAGGCAGTCGGTGAACCCACCTTCCTCAAGGGATCACTTCAACACCCGAAGCTTCGCAGCCGAAAATGACCTCGGTCTTCCTGTTGCTGCCGTTTACTTCAATGCGCAGAGAGAAACGGCAGCAAGAAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

173

Amino Acids

19.49

Weight (kDa)

9.34

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	50 - 160	2e-12	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
Acc16I	TGCGCA	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	281
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	2 cut(s)	227, 423
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	6 cut(s)	112, 167, 244, 373, 424, 484
AjnI	CCWGG	2 cut(s)	220, 277
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AleI	CACNNNNGTG	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	124, 318, 435
AluI	AGCT	3 cut(s)	124, 318, 435
Alw21I	GWGCWC	2 cut(s)	126, 252
AlwI	GGATC	2 cut(s)	227, 423
AoxI	GGCC	2 cut(s)	223, 332
ApeKI	GCWGC	3 cut(s)	440, 470, 503
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	4 cut(s)	133, 211, 325, 406
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	2 cut(s)	100, 452
Bbv12I	GWGCWC	2 cut(s)	126, 252
BbvI	GCAGC	3 cut(s)	452, 457, 515
BccI	CCATC	2 cut(s)	139, 304
BceAI	ACGGC	2 cut(s)	458, 516
BcgI	CGANNNNNNTGC	3 cut(s)	28, 85, 119
BciT130I	CCWGG	2 cut(s)	222, 279
BfaI	CTAG	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	441, 471, 504
BlsI	GCNGC	3 cut(s)	442, 472, 505
Bme1390I	CCNGG	2 cut(s)	222, 279
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	3 cut(s)	18, 226, 283
BmrFI	CCNGG	2 cut(s)	222, 279
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	315
BmuI	ACTGGG	1 cut(s)	222
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	2 cut(s)	100, 452
BpuEI	CTTGAG	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	329, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	228, 263
BseBI	CCWGG	2 cut(s)	222, 279
BseDI	CCNNGG	2 cut(s)	329, 454
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseNI	ACTGG	2 cut(s)	228, 263
BseXI	GCAGC	3 cut(s)	452, 457, 515
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	225, 334
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	126, 252
BslI	CCNNNNNNNGG	1 cut(s)	341
BsnI	GGCC	2 cut(s)	225, 334
Bsp1286I	GDGCHC	2 cut(s)	126, 252
Bsp143I	GATC	3 cut(s)	182, 232, 415
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	2 cut(s)	225, 334
BspLI	GGNNCC	3 cut(s)	18, 226, 283
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	227, 423
BspQI	GCTCTTC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	228, 263
BssECI	CCNNGG	2 cut(s)	329, 454
BssMI	GATC	3 cut(s)	182, 232, 415
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	2 cut(s)	222, 279
Bst6I	CTCTTC	3 cut(s)	28, 131, 298
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	3 cut(s)	185, 235, 418
BstMBI	GATC	3 cut(s)	182, 232, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	222, 279
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	220, 277
BstSFI	CTRYAG	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	452, 457, 515
BstV2I	GAAGAC	2 cut(s)	100, 452
BsuRI	GGCC	2 cut(s)	225, 334
BtsIMutI	CAGTG	2 cut(s)	235, 256
BveI	ACCTGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	224
CviAII	CATG	2 cut(s)	119, 178
CviJI	RGCY	6 cut(s)	124, 225, 318, 334, 435, 443
CviKI_1	RGCY	6 cut(s)	124, 225, 318, 334, 435, 443
DpnI	GATC	3 cut(s)	184, 234, 417
DpnII	GATC	3 cut(s)	182, 232, 415
Eam1104I	CTCTTC	3 cut(s)	28, 131, 298
EarI	CTCTTC	3 cut(s)	28, 131, 298
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	220, 277
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	2 cut(s)	122, 181
FaiI	YATR	4 cut(s)	41, 120, 179, 341
FatI	CATG	2 cut(s)	118, 177
Fnu4HI	GCNGC	3 cut(s)	441, 471, 504
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	441, 471, 504
FspBI	CTAG	1 cut(s)	517
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	441, 471, 504
HaeIII	GGCC	2 cut(s)	225, 334
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	122, 181
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	3 cut(s)	36, 163, 345
HphI	GGTGA	4 cut(s)	133, 211, 325, 406
Hpy166II	GTNNAC	2 cut(s)	397, 478
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	2 cut(s)	397, 478
HpyAV	CCTTC	3 cut(s)	238, 378, 414
HpyCH4V	TGCA	2 cut(s)	137, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	122, 181
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	182, 232, 415
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	452, 457, 515
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	1 cut(s)	517
MaeIII	GTNAC	4 cut(s)	85, 139, 265, 292
MalI	GATC	3 cut(s)	184, 234, 417
MboI	GATC	3 cut(s)	182, 232, 415
MboII	GAAGA	6 cut(s)	45, 100, 118, 181, 315, 452
MhlI	GDGCHC	2 cut(s)	126, 252
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	164, 418, 464
MslI	CAYNNNNRTG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	222, 279
MvaI	CCWGG	2 cut(s)	222, 279
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	3 cut(s)	182, 232, 415
NlaIII	CATG	2 cut(s)	122, 181
NlaIV	GGNNCC	3 cut(s)	18, 226, 283
NmuCI	GTSAC	3 cut(s)	85, 139, 265
NsbI	TGCGCA	1 cut(s)	489
OliI	CACNNNNGTG	1 cut(s)	197
PaqCI	CACCTGC	1 cut(s)	261
PciSI	GCTCTTC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	163, 345
PkrI	GCNGC	3 cut(s)	442, 472, 505
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	220, 277
PspGI	CCWGG	2 cut(s)	220, 277
PspN4I	GGNNCC	3 cut(s)	18, 226, 283
PspPI	GGNCC	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	131
SatI	GCNGC	3 cut(s)	441, 471, 504
Sau3AI	GATC	3 cut(s)	182, 232, 415
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	222, 279
SduI	GDGCHC	2 cut(s)	126, 252
SetI	ASST	8 cut(s)	22, 126, 255, 320, 356, 406, 437, 456
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	517
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	220, 277
StyI	CCWWGG	1 cut(s)	329
TaqII	GACCGA	1 cut(s)	446
TfiI	GAWTC	2 cut(s)	163, 345
TscAI	CASTG	2 cut(s)	235, 263
TseFI	GTSAC	3 cut(s)	85, 139, 265
TseI	GCWGC	3 cut(s)	440, 470, 503
Tsp45I	GTSAC	3 cut(s)	85, 139, 265
TspRI	CASTG	2 cut(s)	235, 263
XspI	CTAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.