Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Forward (+)

13879398 .. 13881318

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCAAGAATATCTGAGCCTCTGGTTGTTGGGAGAGTGATAGGAGATGTTCTTGATTGTTTCACCCCAACAACAAAAATGTCTGTCACTTACAACACCAGGCTAGTCTGCAATGGATATGAGCTCTATCCTTCTGCTGTCACCACCAAACCTAGAGTTGAGATTCAAGGAGGAGATATGAGAACTTTCTTTACTCTGATCATGACAGACCCAGATGTTCCTGGCCCTAGTGATCCTTATTTAAGGGAGCACCTGCACTGGATTGTGACAGATATTCCGGGCACCACAGATGCCACATTTGGAAGAGAGGTGGTGAGCTATGAGATGCCAAGGCCCAACATTGGCATCCACAGGTTTGTGTTTGTTCTCTTCAAGCAGACAAGAAGGCAGTCTGTGAACCCTCCTTCCTCAAGGGATCATTTCAGTGCTCGAAGCTTTGCAGCTGAAAACGACCTGGGTCCTCCTGTCGCTGCCGTTTACTTCAATTGCCAGAGAGAAACGGCAGCTAGAAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

173

Amino Acids

19.42

Weight (kDa)

8.52

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	261
Acc36I	ACCTGC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	227, 423
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	167, 373, 484
AjnI	CCWGG	3 cut(s)	98, 220, 453
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	5 cut(s)	124, 318, 435, 443, 506
AluI	AGCT	5 cut(s)	124, 318, 435, 443, 506
Alw21I	GWGCWC	3 cut(s)	126, 252, 430
AlwI	GGATC	2 cut(s)	227, 423
AoxI	GGCC	2 cut(s)	223, 332
ApeKI	GCWGC	3 cut(s)	440, 470, 503
AspS9I	GGNCC	3 cut(s)	224, 333, 458
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	55, 133, 325
AvaII	GGWCC	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	3 cut(s)	126, 252, 430
BbvI	GCAGC	3 cut(s)	452, 457, 515
BceAI	ACGGC	2 cut(s)	458, 516
BciT130I	CCWGG	3 cut(s)	100, 222, 455
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	279
BfaI	CTAG	5 cut(s)	104, 153, 228, 507, 517
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	441, 471, 504
BlsI	GCNGC	3 cut(s)	442, 472, 505
Bme1390I	CCNGG	4 cut(s)	100, 222, 279, 455
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	3 cut(s)	224, 333, 458
BmiI	GGNNCC	2 cut(s)	283, 459
BmrFI	CCNGG	4 cut(s)	100, 222, 279, 455
BmsI	GCATC	3 cut(s)	280, 315, 354
BoxI	GACNNNNGTC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	329, 454
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	3 cut(s)	100, 222, 455
BseDI	CCNNGG	2 cut(s)	329, 454
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	452, 457, 515
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	225, 334
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	3 cut(s)	126, 252, 430
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	341
BsnI	GGCC	2 cut(s)	225, 334
Bsp1286I	GDGCHC	4 cut(s)	126, 252, 284, 430
Bsp143I	GATC	3 cut(s)	198, 232, 415
BspANI	GGCC	2 cut(s)	225, 334
BspCNI	CTCAG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	283, 459
BspMI	ACCTGC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	227, 423
BspT107I	GGYRCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	329, 454
BssMI	GATC	3 cut(s)	198, 232, 415
BssT1I	CCWWGG	1 cut(s)	329
Bst2UI	CCWGG	3 cut(s)	100, 222, 455
Bst6I	CTCTTC	2 cut(s)	298, 374
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	345
BstKTI	GATC	3 cut(s)	201, 235, 418
BstMBI	GATC	3 cut(s)	198, 232, 415
BstNI	CCWGG	3 cut(s)	100, 222, 455
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	4 cut(s)	98, 220, 277, 453
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	452, 457, 515
BsuRI	GGCC	2 cut(s)	225, 334
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	256, 430
BveI	ACCTGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	3 cut(s)	224, 333, 458
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	9 cut(s)	19, 103, 124, 225, 318, 334, 435, 443, 506
CviKI_1	RGCY	9 cut(s)	19, 103, 124, 225, 318, 334, 435, 443, 506
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	200, 234, 417
DpnII	GATC	3 cut(s)	198, 232, 415
Eam1104I	CTCTTC	2 cut(s)	298, 374
EarI	CTCTTC	2 cut(s)	298, 374
Ecl136II	GAGCTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	458
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	98, 220, 453
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	1 cut(s)	205
FaiI	YATR	4 cut(s)	120, 179, 203, 321
FatI	CATG	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	441, 471, 504
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	441, 471, 504
FspBI	CTAG	5 cut(s)	104, 153, 228, 507, 517
GluI	GCNGC	3 cut(s)	441, 471, 504
HaeIII	GGCC	2 cut(s)	225, 334
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	3 cut(s)	55, 133, 325
Hpy166II	GTNNAC	2 cut(s)	397, 478
Hpy188I	TCNGA	2 cut(s)	16, 198
Hpy188III	TCNNGA	2 cut(s)	53, 202
Hpy8I	GTNNAC	2 cut(s)	397, 478
HpyAV	CCTTC	3 cut(s)	141, 378, 414
HpyCH4V	TGCA	3 cut(s)	111, 256, 440
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	198, 232, 415
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	452, 457, 515
LweI	GCATC	3 cut(s)	280, 315, 354
MaeI	CTAG	5 cut(s)	104, 153, 228, 507, 517
MaeIII	GTNAC	3 cut(s)	85, 139, 265
MalI	GATC	3 cut(s)	200, 234, 417
MboI	GATC	3 cut(s)	198, 232, 415
MboII	GAAGA	2 cut(s)	315, 361
MfeI	CAATTG	1 cut(s)	484
MhlI	GDGCHC	4 cut(s)	126, 252, 284, 430
MluCI	AATT	1 cut(s)	484
MnlI	CCTC	6 cut(s)	30, 164, 301, 411, 418, 471
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	4 cut(s)	100, 222, 279, 455
MunI	CAATTG	1 cut(s)	484
MvaI	CCWGG	3 cut(s)	100, 222, 455
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	198, 232, 415
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	283, 459
NmuCI	GTSAC	3 cut(s)	85, 139, 265
PagI	TCATGA	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	442, 472, 505
PpuMI	RGGWCCY	1 cut(s)	458
PshAI	GACNNNNGTC	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	98, 220, 453
PspGI	CCWGG	3 cut(s)	98, 220, 453
PspN4I	GGNNCC	2 cut(s)	283, 459
PspPI	GGNCC	3 cut(s)	224, 333, 458
PspPPI	RGGWCCY	1 cut(s)	458
PsrI	GAACNNNNNNTAC	2 cut(s)	175, 207
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	3 cut(s)	441, 471, 504
Sau3AI	GATC	3 cut(s)	198, 232, 415
Sau96I	GGNCC	3 cut(s)	224, 333, 458
ScrFI	CCNGG	4 cut(s)	100, 222, 279, 455
SduI	GDGCHC	4 cut(s)	126, 252, 284, 430
SfaNI	GCATC	3 cut(s)	280, 315, 354
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	1 cut(s)	484
SspMI	CTAG	5 cut(s)	104, 153, 228, 507, 517
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	4 cut(s)	98, 220, 277, 453
StyI	CCWWGG	1 cut(s)	329
TaqI	TCGA	1 cut(s)	430
TasI	AATT	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	263, 430
TseFI	GTSAC	3 cut(s)	85, 139, 265
TseI	GCWGC	3 cut(s)	440, 470, 503
Tsp45I	GTSAC	3 cut(s)	85, 139, 265
TspRI	CASTG	2 cut(s)	263, 430
VpaK11BI	GGWCC	1 cut(s)	458
XspI	CTAG	5 cut(s)	104, 153, 228, 507, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.